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Adapting Pretrained Language Models for Solving Tabular Prediction Problems in the Electronic Health Record

arXiv.org Artificial Intelligence

We propose an approach for adapting the DeBERTa model for electronic health record (EHR) tasks using domain adaptation. We pretrain a small DeBERTa model on a dataset consisting of MIMIC-III discharge summaries, clinical notes, radiology reports, and PubMed abstracts. We compare this model's performance with a DeBERTa model pre-trained on clinical texts from our institutional EHR (MeDeBERTa) and an XGBoost model. We evaluate performance on three benchmark tasks for emergency department outcomes using the MIMIC-IV-ED dataset. We preprocess the data to convert it into text format and generate four versions of the original datasets to compare data processing and data inclusion. The results show that our proposed approach outperforms the alternative models on two of three tasks (p<0.001) and matches performance on the third task, with the use of descriptive columns improving performance over the original column names.


Predicting Thermoelectric Power Factor of Bismuth Telluride During Laser Powder Bed Fusion Additive Manufacturing

arXiv.org Artificial Intelligence

An additive manufacturing (AM) process, like laser powder bed fusion, allows for the fabrication of objects by spreading and melting powder in layers until a freeform part shape is created. In order to improve the properties of the material involved in the AM process, it is important to predict the material characterization property as a function of the processing conditions. In thermoelectric materials, the power factor is a measure of how efficiently the material can convert heat to electricity. While earlier works have predicted the material characterization properties of different thermoelectric materials using various techniques, implementation of machine learning models to predict the power factor of bismuth telluride (Bi2Te3) during the AM process has not been explored. This is important as Bi2Te3 is a standard material for low temperature applications. Thus, we used data about manufacturing processing parameters involved and in-situ sensor monitoring data collected during AM of Bi2Te3, to train different machine learning models in order to predict its thermoelectric power factor. We implemented supervised machine learning techniques using 80% training and 20% test data and further used the permutation feature importance method to identify important processing parameters and in-situ sensor features which were best at predicting power factor of the material. Ensemble-based methods like random forest, AdaBoost classifier, and bagging classifier performed the best in predicting power factor with the highest accuracy of 90% achieved by the bagging classifier model. Additionally, we found the top 15 processing parameters and in-situ sensor features to characterize the material manufacturing property like power factor. These features could further be optimized to maximize power factor of the thermoelectric material and improve the quality of the products built using this material.


Measuring Fairness Under Unawareness of Sensitive Attributes: A Quantification-Based Approach

arXiv.org Artificial Intelligence

Algorithms and models are increasingly deployed to inform decisions about people, inevitably affecting their lives. As a consequence, those in charge of developing these models must carefully evaluate their impact on different groups of people and favour group fairness, that is, ensure that groups determined by sensitive demographic attributes, such as race or sex, are not treated unjustly. To achieve this goal, the availability (awareness) of these demographic attributes to those evaluating the impact of these models is fundamental. Unfortunately, collecting and storing these attributes is often in conflict with industry practices and legislation on data minimisation and privacy. For this reason, it can be hard to measure the group fairness of trained models, even from within the companies developing them. In this work, we tackle the problem of measuring group fairness under unawareness of sensitive attributes, by using techniques from quantification, a supervised learning task concerned with directly providing group-level prevalence estimates (rather than individual-level class labels). We show that quantification approaches are particularly suited to tackle the fairness-under-unawareness problem, as they are robust to inevitable distribution shifts while at the same time decoupling the (desirable) objective of measuring group fairness from the (undesirable) side effect of allowing the inference of sensitive attributes of individuals. More in detail, we show that fairness under unawareness can be cast as a quantification problem and solved with proven methods from the quantification literature. We show that these methods outperform previous approaches to measure demographic parity in five experimental protocols, corresponding to important challenges that complicate the estimation of classifier fairness under unawareness.


Disruption Precursor Onset Time Study Based on Semi-supervised Anomaly Detection

arXiv.org Artificial Intelligence

The full understanding of plasma disruption in tokamaks is currently lacking, and data-driven methods are extensively used for disruption prediction. However, most existing data-driven disruption predictors employ supervised learning techniques, which require labeled training data. The manual labeling of disruption precursors is a tedious and challenging task, as some precursors are difficult to accurately identify, limiting the potential of machine learning models. To address this issue, commonly used labeling methods assume that the precursor onset occurs at a fixed time before the disruption, which may not be consistent for different types of disruptions or even the same type of disruption, due to the different speeds at which plasma instabilities escalate. This leads to mislabeled samples and suboptimal performance of the supervised learning predictor. In this paper, we present a disruption prediction method based on anomaly detection that overcomes the drawbacks of unbalanced positive and negative data samples and inaccurately labeled disruption precursor samples. We demonstrate the effectiveness and reliability of anomaly detection predictors based on different algorithms on J-TEXT and EAST to evaluate the reliability of the precursor onset time inferred by the anomaly detection predictor. The precursor onset times inferred by these predictors reveal that the labeling methods have room for improvement as the onset times of different shots are not necessarily the same. Finally, we optimize precursor labeling using the onset times inferred by the anomaly detection predictor and test the optimized labels on supervised learning disruption predictors. The results on J-TEXT and EAST show that the models trained on the optimized labels outperform those trained on fixed onset time labels.


Assorted, Archetypal and Annotated Two Million (3A2M) Cooking Recipes Dataset based on Active Learning

arXiv.org Artificial Intelligence

Cooking recipes allow individuals to exchange culinary ideas and provide food preparation instructions. Due to a lack of adequate labeled data, categorizing raw recipes found online to the appropriate food genres is a challenging task in this domain. Utilizing the knowledge of domain experts to categorize recipes could be a solution. In this study, we present a novel dataset of two million culinary recipes labeled in respective categories leveraging the knowledge of food experts and an active learning technique. To construct the dataset, we collect the recipes from the RecipeNLG dataset. Then, we employ three human experts whose trustworthiness score is higher than 86.667% to categorize 300K recipe by their Named Entity Recognition (NER) and assign it to one of the nine categories: bakery, drinks, non-veg, vegetables, fast food, cereals, meals, sides and fusion. Finally, we categorize the remaining 1900K recipes using Active Learning method with a blend of Query-by-Committee and Human In The Loop (HITL) approaches. There are more than two million recipes in our dataset, each of which is categorized and has a confidence score linked with it. For the 9 genres, the Fleiss Kappa score of this massive dataset is roughly 0.56026. We believe that the research community can use this dataset to perform various machine learning tasks such as recipe genre classification, recipe generation of a specific genre, new recipe creation, etc. The dataset can also be used to train and evaluate the performance of various NLP tasks such as named entity recognition, part-of-speech tagging, semantic role labeling, and so on. The dataset will be available upon publication: https://tinyurl.com/3zu4778y.


Evaluating XGBoost for Balanced and Imbalanced Data: Application to Fraud Detection

arXiv.org Artificial Intelligence

This paper evaluates XGboost's performance given different dataset sizes and class distributions, from perfectly balanced to highly imbalanced. XGBoost has been selected for evaluation, as it stands out in several benchmarks due to its detection performance and speed. After introducing the problem of fraud detection, the paper reviews evaluation metrics for detection systems or binary classifiers, and illustrates with examples how different metrics work for balanced and imbalanced datasets. Then, it examines the principles of XGBoost. It proposes a pipeline for data preparation and compares a Vanilla XGBoost against a random search-tuned XGBoost. Random search fine-tuning provides consistent improvement for large datasets of 100 thousand samples, not so for medium and small datasets of 10 and 1 thousand samples, respectively. Besides, as expected, XGBoost recognition performance improves as more data is available, and deteriorates detection performance as the datasets become more imbalanced. Tests on distributions with 50, 45, 25, and 5 percent positive samples show that the largest drop in detection performance occurs for the distribution with only 5 percent positive samples. Sampling to balance the training set does not provide consistent improvement. Therefore, future work will include a systematic study of different techniques to deal with data imbalance and evaluating other approaches, including graphs, autoencoders, and generative adversarial methods, to deal with the lack of labels.


Achieving Counterfactual Fairness with Imperfect Structural Causal Model

arXiv.org Artificial Intelligence

Counterfactual fairness alleviates the discrimination between the model prediction toward an individual in the actual world (observational data) and that in counterfactual world (i.e., what if the individual belongs to other sensitive groups). The existing studies need to pre-define the structural causal model that captures the correlations among variables for counterfactual inference; however, the underlying causal model is usually unknown and difficult to be validated in real-world scenarios. Moreover, the misspecification of the causal model potentially leads to poor performance in model prediction and thus makes unfair decisions. In this research, we propose a novel minimax game-theoretic model for counterfactual fairness that can produce accurate results meanwhile achieve a counterfactually fair decision with the relaxation of strong assumptions of structural causal models. In addition, we also theoretically prove the error bound of the proposed minimax model. Empirical experiments on multiple real-world datasets illustrate our superior performance in both accuracy and fairness. Source code is available at \url{https://github.com/tridungduong16/counterfactual_fairness_game_theoretic}.


VERN: Vegetation-aware Robot Navigation in Dense Unstructured Outdoor Environments

arXiv.org Artificial Intelligence

We propose a novel method for autonomous legged robot navigation in densely vegetated environments with a variety of pliable/traversable and non-pliable/untraversable vegetation. We present a novel few-shot learning classifier that can be trained on a few hundred RGB images to differentiate flora that can be navigated through, from the ones that must be circumvented. Using the vegetation classification and 2D lidar scans, our method constructs a vegetation-aware traversability cost map that accurately represents the pliable and non-pliable obstacles with lower, and higher traversability costs, respectively. Our cost map construction accounts for misclassifications of the vegetation and further lowers the risk of collisions, freezing and entrapment in vegetation during navigation. Furthermore, we propose holonomic recovery behaviors for the robot for scenarios where it freezes, or gets physically entrapped in dense, pliable vegetation. We demonstrate our method on a Boston Dynamics Spot robot in real-world unstructured environments with sparse and dense tall grass, bushes, trees, etc. We observe an increase of 25-90% in success rates, 10-90% decrease in freezing rate, and up to 65% decrease in the false positive rate compared to existing methods.


Fairness meets Cross-Domain Learning: a new perspective on Models and Metrics

arXiv.org Artificial Intelligence

Deep learning-based recognition systems are deployed at scale for several real-world applications that inevitably involve our social life. Although being of great support when making complex decisions, they might capture spurious data correlations and leverage sensitive attributes (e.g. age, gender, ethnicity). How to factor out this information while keeping a high prediction performance is a task with still several open questions, many of which are shared with those of the domain adaptation and generalization literature which focuses on avoiding visual domain biases. In this work, we propose an in-depth study of the relationship between cross-domain learning (CD) and model fairness by introducing a benchmark on face and medical images spanning several demographic groups as well as classification and localization tasks. After having highlighted the limits of the current evaluation metrics, we introduce a new Harmonic Fairness (HF) score to assess jointly how fair and accurate every model is with respect to a reference baseline. Our study covers 14 CD approaches alongside three state-of-the-art fairness algorithms and shows how the former can outperform the latter. Overall, our work paves the way for a more systematic analysis of fairness problems in computer vision. Code available at: https://github.com/iurada/fairness_crossdomain


Informed Machine Learning, Centrality, CNN, Relevant Document Detection, Repatriation of Indigenous Human Remains

arXiv.org Artificial Intelligence

Among the pressing issues facing Australian and other First Nations peoples is the repatriation of the bodily remains of their ancestors, which are currently held in Western scientific institutions. The success of securing the return of these remains to their communities for reburial depends largely on locating information within scientific and other literature published between 1790 and 1970 documenting their theft, donation, sale, or exchange between institutions. This article reports on collaborative research by data scientists and social science researchers in the Research, Reconcile, Renew Network (RRR) to develop and apply text mining techniques to identify this vital information. We describe our work to date on developing a machine learning-based solution to automate the process of finding and semantically analysing relevant texts. Classification models, particularly deep learning-based models, are known to have low accuracy when trained with small amounts of labelled (i.e. relevant/non-relevant) documents. To improve the accuracy of our detection model, we explore the use of an Informed Neural Network (INN) model that describes documentary content using expert-informed contextual knowledge. Only a few labelled documents are used to provide specificity to the model, using conceptually related keywords identified by RRR experts in provenance research. The results confirm the value of using an INN network model for identifying relevant documents related to the investigation of the global commercial trade in Indigenous human remains. Empirical analysis suggests that this INN model can be generalized for use by other researchers in the social sciences and humanities who want to extract relevant information from large textual corpora.