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 Performance Analysis


Trustworthy Retrosynthesis: Eliminating Hallucinations with a Diverse Ensemble of Reaction Scorers

arXiv.org Artificial Intelligence

Retrosynthesis is one of the domains transformed by the rise of generative models, and it is one where the problem of nonsensical or erroneous outputs (hallucinations) is particularly insidious: reliable assessment of synthetic plans is time-consuming, with automatic methods lacking. In this work, we present RetroTrim, a retrosynthesis system that successfully avoids nonsensical plans on a set of challenging drug-like targets. Compared to common baselines in the field, our system is not only the sole method that succeeds in filtering out hallucinated reactions, but it also results in the highest number of high-quality paths overall. The key insight behind RetroTrim is the combination of diverse reaction scoring strategies, based on machine learning models and existing chemical databases. We show that our scoring strategies capture different classes of hallucinations by analyzing them on a dataset of labeled retrosynthetic intermediates. This approach formed the basis of our winning solution to the Standard Industries \$1 million Retrosynthesis Challenge. To measure the performance of retrosynthesis systems, we propose a novel evaluation protocol for reactions and synthetic paths based on a structured review by expert chemists. Using this protocol, we compare systems on a set of 32 novel targets, curated to reflect recent trends in drug structures. While the insights behind our methodology are broadly applicable to retrosynthesis, our focus is on targets in the drug-like domain. By releasing our benchmark targets and the details of our evaluation protocol, we hope to inspire further research into reliable retrosynthesis.


Scaling to Multimodal and Multichannel Heart Sound Classification with Synthetic and Augmented Biosignals

arXiv.org Artificial Intelligence

Cardiovascular diseases (CVDs) are the leading cause of death worldwide, accounting for approximately 17.9 million deaths each year. Early detection is critical, creating a demand for accurate and inexpensive pre-screening methods. Deep learning has recently been applied to classify abnormal heart sounds indicative of CVDs using synchronised phonocardiogram (PCG) and electrocardiogram (ECG) signals, as well as multichannel PCG (mPCG). However, state-of-the-art architectures remain underutilised due to the limited availability of synchronised and multichannel datasets. Augmented datasets and pre-trained models provide a pathway to overcome these limitations, enabling transformer-based architectures to be trained effectively. This work combines traditional signal processing with denoising diffusion models, WaveGrad and DiffWave, to create an augmented dataset to fine-tune a Wav2Vec 2.0-based classifier on multimodal and multichannel heart sound datasets. The approach achieves state-of-the-art performance. On the Computing in Cardiology (CinC) 2016 dataset of single channel PCG, accuracy, unweighted average recall (UAR), sensitivity, specificity and Matthew's correlation coefficient (MCC) reach 92.48%, 93.05%, 93.63%, 92.48%, 94.93% and 0.8283, respectively. Using the synchronised PCG and ECG signals of the training-a dataset from CinC, 93.14%, 92.21%, 94.35%, 90.10%, 95.12% and 0.8380 are achieved for accuracy, UAR, sensitivity, specificity and MCC, respectively. Using a wearable vest dataset consisting of mPCG data, the model achieves 77.13% accuracy, 74.25% UAR, 86.47% sensitivity, 62.04% specificity, and 0.5082 MCC. These results demonstrate the effectiveness of transformer-based models for CVD detection when supported by augmented datasets, highlighting their potential to advance multimodal and multichannel heart sound classification.


Learning to Select MCP Algorithms: From Traditional ML to Dual-Channel GAT-MLP

arXiv.org Artificial Intelligence

The Maximum Clique Problem (MCP) is a foundational NP-hard problem with wide-ranging applications, yet no single algorithm consistently outperforms all others across diverse graph instances. This underscores the critical need for instance-aware algorithm selection, a domain that remains largely unexplored for the MCP. To address this gap, we propose a novel learning-based framework that integrates both traditional machine learning and graph neural networks. We first construct a benchmark dataset by executing four state-of-the-art exact MCP solvers on a diverse collection of graphs and extracting their structural features. An evaluation of conventional classifiers establishes Random Forest as a strong baseline and reveals that connectivity and topological features are key predictors of performance. Building on these insights, we develop GAT-MLP, a dual-channel model that combines a Graph Attention Network (GAT) to encode local graph structure with a Multilayer Perceptron (MLP) to model global features. Extensive experiments demonstrate that GAT-MLP achieves superior and consistent performance, significantly outperforming all baseline methods. Our results highlight the effectiveness of the dual-channel architecture and the promise of graph neural networks for combinatorial algorithm selection, achieving 90.43% accuracy in choosing the optimal solver. Code and models are available at: https://anonymous.4open.science/r/GAT-MLP-7E5F.


Enhancing LLM Watermark Resilience Against Both Scrubbing and Spoofing Attacks

arXiv.org Artificial Intelligence

Watermarking is a promising defense against the misuse of large language models (LLMs), yet it remains vulnerable to scrubbing and spoofing attacks. This vulnerability stems from an inherent trade-off governed by watermark window size: smaller windows resist scrubbing better but are easier to reverse-engineer, enabling low-cost statistics-based spoofing attacks. This work breaks this trade-off by introducing a novel mechanism, equivalent texture keys, where multiple tokens within a watermark window can independently support the detection. Based on the redundancy, we propose a novel watermark scheme with Sub-vocabulary decomposed Equivalent tExture Key (SEEK). It achieves a Pareto improvement, increasing the resilience against scrubbing attacks without compromising robustness to spoofing. Experiments demonstrate SEEK's superiority over prior method, yielding spoofing robustness gains of +88.2%/+92.3%/+82.0% and scrubbing robustness gains of +10.2%/+6.4%/+24.6% across diverse dataset settings.


One Sample is Enough to Make Conformal Prediction Robust

arXiv.org Artificial Intelligence

For any black-box model, conformal prediction (CP) returns prediction sets guaranteed to include the true label with high adjustable probability. Robust CP (RCP) extends the guarantee to the worst case noise up to a pre-defined magnitude. For RCP, a well-established approach is to use randomized smoothing since it is applicable to any black-box model and provides smaller sets compared to deterministic methods. However, smoothing-based robustness requires many model forward passes per each input which is computationally expensive. We show that conformal prediction attains some robustness even with a single forward pass on a randomly perturbed input. Using any binary certificate we propose a single sample robust CP (RCP1). Our approach returns robust sets with smaller average set size compared to SOTA methods which use many (e.g. 100) passes per input. Our key insight is to certify the conformal procedure itself rather than individual conformity scores. Our approach is agnostic to the task (classification and regression). We further extend our approach to smoothing-based robust conformal risk control.


Evaluating the robustness of adversarial defenses in malware detection systems

arXiv.org Artificial Intelligence

Machine learning is a key tool for Android malware detection, effectively identifying malicious patterns in apps. However, ML-based detectors are vulnerable to evasion attacks, where small, crafted changes bypass detection. Despite progress in adversarial defenses, the lack of comprehensive evaluation frameworks in binary-constrained domains limits understanding of their robustness. We introduce two key contributions. First, Prioritized Binary Rounding, a technique to convert continuous perturbations into binary feature spaces while preserving high attack success and low perturbation size. Second, the sigma-binary attack, a novel adversarial method for binary domains, designed to achieve attack goals with minimal feature changes. Experiments on the Malscan dataset show that sigma-binary outperforms existing attacks and exposes key vulnerabilities in state-of-the-art defenses. Defenses equipped with adversary detectors, such as KDE, DLA, DNN+, and ICNN, exhibit significant brittleness, with attack success rates exceeding 90% using fewer than 10 feature modifications and reaching 100% with just 20. Adversarially trained defenses, including AT-rFGSM-k, AT-MaxMA, improves robustness under small budgets but remains vulnerable to unrestricted perturbations, with attack success rates of 99.45% and 96.62%, respectively. Although PAD-SMA demonstrates strong robustness against state-of-the-art gradient-based adversarial attacks by maintaining an attack success rate below 16.55%, the sigma-binary attack significantly outperforms these methods, achieving a 94.56% success rate under unrestricted perturbations. These findings highlight the critical need for precise method like sigma-binary to expose hidden vulnerabilities in existing defenses and support the development of more resilient malware detection systems.


AI Application in Anti-Money Laundering for Sustainable and Transparent Financial Systems

arXiv.org Artificial Intelligence

Money laundering and financial fraud remain major threats to global financial stability, costing trillions annually and challenging regulatory oversight. This paper reviews how artificial intelligence (AI) applications can modernize Anti-Money Laundering (AML) workflows by improving detection accuracy, lowering false-positive rates, and reducing the operational burden of manual investigations, thereby supporting more sustainable development. It further highlights future research directions including federated learning for privacy-preserving collaboration, fairness-aware and interpretable AI, reinforcement learning for adaptive defenses, and human-in-the-loop visualization systems to ensure that next-generation AML architectures remain transparent, accountable, and robust. In the final part, the paper proposes an AI-driven KYC application that integrates graph-based retrieval-augmented generation (RAG Graph) with generative models to enhance efficiency, transparency, and decision support in KYC processes related to money-laundering detection. Experimental results show that the RAG-Graph architecture delivers high faithfulness and strong answer relevancy across diverse evaluation settings, thereby enhancing the efficiency and transparency of KYC CDD/EDD workflows and contributing to more sustainable, resource-optimized compliance practices.


Forests of Uncertaint(r)ees: Using tree-based ensembles to estimate probability distributions of future conflict

arXiv.org Artificial Intelligence

Predictions of fatalities from violent conflict on the PRIO-GRID-month (pgm) level are characterized by high levels of uncertainty, limiting their usefulness in practical applications. We discuss the two main sources of uncertainty for this prediction task, the nature of violent conflict and data limitations, embedding this in the wider literature on uncertainty quantification in machine learning. We develop a strategy to quantify uncertainty in conflict forecasting, shifting from traditional point predictions to full predictive distributions. Our approach compares and combines multiple tree-based classifiers and distributional regressors in a custom auto-ML setup, estimating distributions for each pgm individually. We also test the integration of regional models in spatial ensembles as a potential avenue to reduce uncertainty. The models are able to consistently outperform a suite of benchmarks derived from conflict history in predictions up to one year in advance, with performance driven by regions where conflict was observed. With our evaluation, we emphasize the need to understand how a metric behaves for a given prediction problem, in our case characterized by extremely high zero-inflatedness. While not resulting in better predictions, the integration of smaller models does not decrease performance for this prediction task, opening avenues to integrate data sources with less spatial coverage in the future.


Morphologically-Informed Tokenizers for Languages with Non-Concatenative Morphology: A case study of Yoloxóchtil Mixtec ASR

arXiv.org Artificial Intelligence

This paper investigates the impact of using morphologically-informed tokenizers to aid and streamline the interlinear gloss annotation of an audio corpus of Yoloxóchitl Mixtec (YM) using a combination of ASR and text-based sequence-to-sequence tools, with the goal of improving efficiency while reducing the workload of a human annotator. We present two novel tokenization schemes that separate words in a nonlinear manner, preserving information about tonal morphology as much as possible. One of these approaches, a Segment and Melody tokenizer, simply extracts the tones without predicting segmentation. The other, a Sequence of Processes tokenizer, predicts segmentation for the words, which could allow an end-to-end ASR system to produce segmented and unsegmented transcriptions in a single pass. We find that these novel tokenizers are competitive with BPE and Unigram models, and the Segment-and-Melody model outperforms traditional tokenizers in terms of word error rate but does not reach the same character error rate. In addition, we analyze tokenizers on morphological and information-theoretic metrics to find predictive correlations with downstream performance. Our results suggest that nonlinear tokenizers designed specifically for the non-concatenative morphology of a language are competitive with conventional BPE and Unigram models for ASR. Further research will be necessary to determine the applicability of these tokenizers in downstream processing tasks.


Do We Really Even Need Data? A Modern Look at Drawing Inference with Predicted Data

arXiv.org Machine Learning

As artificial intelligence and machine learning tools become more accessible, and scientists face new obstacles to data collection (e.g., rising costs, declining survey response rates), researchers increasingly use predictions from pre-trained algorithms as substitutes for missing or unobserved data. Though appealing for financial and logistical reasons, using standard tools for inference can misrepresent the association between independent variables and the outcome of interest when the true, unobserved outcome is replaced by a predicted value. In this paper, we characterize the statistical challenges inherent to drawing inference with predicted data (IPD) and show that high predictive accuracy does not guarantee valid downstream inference. We show that all such failures reduce to statistical notions of (i) bias, when predictions systematically shift the estimand or distort relationships among variables, and (ii) variance, when uncertainty from the prediction model and the intrinsic variability of the true data are ignored. We then review recent methods for conducting IPD and discuss how this framework is deeply rooted in classical statistical theory. We then comment on some open questions and interesting avenues for future work in this area, and end with some comments on how to use predicted data in scientific studies that is both transparent and statistically principled.