With the aim to stimulate future research, we describe an exploratory study of a railway rescheduling problem. A widely used approach in practice and state of the art is to decompose these complex problems by geographical scope. Instead, we propose defining a core problem that restricts a rescheduling problem in response to a disturbance to only trains that need to be rescheduled, hence restricting the scope in both time and space. In this context, the difficulty resides in defining a scoper that can predict a subset of train services that will be affected by a given disturbance. We report preliminary results using the Flatland simulation environment that highlights the potential and challenges of this idea. We provide an extensible playground open-source implementation based on the Flatland railway environment and Answer-Set Programming.

DFU is a severe complication of diabetes that can lead to amputation of the lower limb if not treated properly. Inspired by the 2021 Diabetic Foot Ulcer Grand Challenge, researchers designed automated multi-class classification of DFU, including infection, ischaemia, both of these conditions, and none of these conditions. However, it remains a challenge as classification accuracy is still not satisfactory. This paper proposes a Venn Diagram interpretation of multi-label CNN-based method, utilizing different image enhancement strategies, to improve the multi-class DFU classification. We propose to reduce the four classes into two since both class wounds can be interpreted as the simultaneous occurrence of infection and ischaemia and none class wounds as the absence of infection and ischaemia. We introduce a novel Venn Diagram representation block in the classifier to interpret all four classes from these two classes. To make our model more resilient, we propose enhancing the perceptual quality of DFU images, particularly blurry or inconsistently lit DFU images, by performing color and sharpness enhancements on them. We also employ a fine-tuned optimization technique, adaptive sharpness aware minimization, to improve the CNN model generalization performance. The proposed method is evaluated on the test dataset of DFUC2021, containing 5,734 images and the results are compared with the top-3 winning entries of DFUC2021. Our proposed approach outperforms these existing approaches and achieves Macro-Average F1, Recall and Precision scores of 0.6592, 0.6593, and 0.6652, respectively.Additionally, We perform ablation studies and image quality measurements to further interpret our proposed method. This proposed method will benefit patients with DFUs since it tackles the inconsistencies in captured images and can be employed for a more robust remote DFU wound classification.

Federated Learning (FL) is a novel approach enabling several clients holding sensitive data to collaboratively train machine learning models, without centralizing data. The cross-silo FL setting corresponds to the case of few ($2$--$50$) reliable clients, each holding medium to large datasets, and is typically found in applications such as healthcare, finance, or industry. While previous works have proposed representative datasets for cross-device FL, few realistic healthcare cross-silo FL datasets exist, thereby slowing algorithmic research in this critical application. In this work, we propose a novel cross-silo dataset suite focused on healthcare, FLamby (Federated Learning AMple Benchmark of Your cross-silo strategies), to bridge the gap between theory and practice of cross-silo FL. FLamby encompasses 7 healthcare datasets with natural splits, covering multiple tasks, modalities, and data volumes, each accompanied with baseline training code. As an illustration, we additionally benchmark standard FL algorithms on all datasets. Our flexible and modular suite allows researchers to easily download datasets, reproduce results and re-use the different components for their research. FLamby is available at~\url{www.github.com/owkin/flamby}.

Most existing exoplanets are discovered using validation techniques rather than being confirmed by complementary observations. These techniques generate a score that is typically the probability of the transit signal being an exoplanet (y(x)=exoplanet) given some information related to that signal (represented by x). Except for the validation technique in Rowe et al. (2014) that uses multiplicity information to generate these probability scores, the existing validation techniques ignore the multiplicity boost information. In this work, we introduce a framework with the following premise: given an existing transit signal vetter (classifier), improve its performance using multiplicity information. We apply this framework to several existing classifiers, which include vespa (Morton et al. 2016), Robovetter (Coughlin et al. 2017), AstroNet (Shallue & Vanderburg 2018), ExoNet (Ansdel et al. 2018), GPC and RFC (Armstrong et al. 2020), and ExoMiner (Valizadegan et al. 2022), to support our claim that this framework is able to improve the performance of a given classifier. We then use the proposed multiplicity boost framework for ExoMiner V1.2, which addresses some of the shortcomings of the original ExoMiner classifier (Valizadegan et al. 2022), and validate 69 new exoplanets for systems with multiple KOIs from the Kepler catalog.

Machine learning (ML) approaches have been used to develop highly accurate and efficient applications in many fields including bio-medical science. However, even with advanced ML techniques, cancer classification using gene expression data is still complicated because of the high dimensionality of the datasets employed. We developed a new fuzzy gene selection technique (FGS) to identify informative genes to facilitate cancer classification and reduce the dimensionality of the available gene expression data. Three feature selection methods (Mutual Information, F-ClassIf, and Chi-squared) were evaluated and employed to obtain the score and rank for each gene. Then, using Fuzzification and Defuzzification methods to obtain the best single score for each gene, which aids in the identification of significant genes. Our study applied the fuzzy measures to six gene expression datasets including four Microarray and two RNA-seq datasets for evaluating the proposed algorithm. With our FGS-enhanced method, the cancer classification model achieved 96.5%,96.2%,96%, and 95.9% for accuracy, precision, recall, and f1-score respectively, which is significantly higher than 69.2% accuracy, 57.8% precision, 66% recall, and 58.2% f1-score when the standard MLP method was used. In examining the six datasets that were used, the proposed model demonstrates it's capacity to classify cancer effectively.

Automated tumor detection in Digital Breast Tomosynthesis (DBT) is a difficult task due to natural tumor rarity, breast tissue variability, and high resolution. Given the scarcity of abnormal images and the abundance of normal images for this problem, an anomaly detection/localization approach could be well-suited. However, most anomaly localization research in machine learning focuses on non-medical datasets, and we find that these methods fall short when adapted to medical imaging datasets. The problem is alleviated when we solve the task from the image completion perspective, in which the presence of anomalies can be indicated by a discrepancy between the original appearance and its auto-completion conditioned on the surroundings. However, there are often many valid normal completions given the same surroundings, especially in the DBT dataset, making this evaluation criterion less precise. To address such an issue, we consider pluralistic image completion by exploring the distribution of possible completions instead of generating fixed predictions. This is achieved through our novel application of spatial dropout on the completion network during inference time only, which requires no additional training cost and is effective at generating diverse completions. We further propose minimum completion distance (MCD), a new metric for detecting anomalies, thanks to these stochastic completions. We provide theoretical as well as empirical support for the superiority over existing methods of using the proposed method for anomaly localization. On the DBT dataset, our model outperforms other state-of-the-art methods by at least 10\% AUROC for pixel-level detection.

Low-resolution point clouds are challenging for object detection methods due to their sparsity. Densifying the present point cloud by concatenating it with its predecessors is a popular solution to this challenge. Such concatenation is possible thanks to the removal of ego vehicle motion using its odometry. This method is called Ego Motion Compensation (EMC). Thanks to the added points, EMC significantly improves the performance of single-frame detectors. However, it suffers from the shadow effect that manifests in dynamic objects' points scattering along their trajectories. This effect results in a misalignment between feature maps and objects' locations, thus limiting performance improvement to stationary and slow-moving objects only. Scene flow allows aligning point clouds in 3D space, thus naturally resolving the misalignment in feature spaces. By observing that scene flow computation shares several components with 3D object detection pipelines, we develop a plug-in module that enables single-frame detectors to compute scene flow to rectify their Bird-Eye View representation. Experiments on the NuScenes dataset show that our module leads to a significant increase (up to 16%) in the Average Precision of large vehicles, which interestingly demonstrates the most severe shadow effect. The code is published at https://github.com/quan-dao/pc-corrector.

Monitoring the health status of patients in the Intensive Care Unit (ICU) is a critical aspect of providing superior care and treatment. The availability of large-scale electronic health records (EHR) provides machine learning models with an abundance of clinical text and vital sign data, enabling them to make highly accurate predictions. Despite the emergence of advanced Natural Language Processing (NLP) algorithms for clinical note analysis, the complex textual structure and noise present in raw clinical data have posed significant challenges. Coarse embedding approaches without domain-specific refinement have limited the accuracy of these algorithms. To address this issue, we propose FINEEHR, a system that utilizes two representation learning techniques, namely metric learning and fine-tuning, to refine clinical note embeddings, while leveraging the intrinsic correlations among different health statuses and note categories. We evaluate the performance of FINEEHR using two metrics, namely Area Under the Curve (AUC) and AUC-PR, on a real-world MIMIC III dataset. Our experimental results demonstrate that both refinement approaches improve prediction accuracy, and their combination yields the best results. Moreover, our proposed method outperforms prior works, with an AUC improvement of over 10%, achieving an average AUC of 96.04% and an average AUC-PR of 96.48% across various classifiers.

While transformer-based systems have enabled greater accuracies with fewer training examples, data acquisition obstacles still persist for rare-class tasks -- when the class label is very infrequent (e.g. < 5% of samples). Active learning has in general been proposed to alleviate such challenges, but choice of selection strategy, the criteria by which rare-class examples are chosen, has not been systematically evaluated. Further, transformers enable iterative transfer-learning approaches. We propose and investigate transfer- and active learning solutions to the rare class problem of dissonance detection through utilizing models trained on closely related tasks and the evaluation of acquisition strategies, including a proposed probability-of-rare-class (PRC) approach. We perform these experiments for a specific rare class problem: collecting language samples of cognitive dissonance from social media. We find that PRC is a simple and effective strategy to guide annotations and ultimately improve model accuracy while transfer-learning in a specific order can improve the cold-start performance of the learner but does not benefit iterations of active learning.

Selecting a minimal feature set that is maximally informative about a target variable is a central task in machine learning and statistics. Information theory provides a powerful framework for formulating feature selection algorithms -- yet, a rigorous, information-theoretic definition of feature relevancy, which accounts for feature interactions such as redundant and synergistic contributions, is still missing. We argue that this lack is inherent to classical information theory which does not provide measures to decompose the information a set of variables provides about a target into unique, redundant, and synergistic contributions. Such a decomposition has been introduced only recently by the partial information decomposition (PID) framework. Using PID, we clarify why feature selection is a conceptually difficult problem when approached using information theory and provide a novel definition of feature relevancy and redundancy in PID terms. From this definition, we show that the conditional mutual information (CMI) maximizes relevancy while minimizing redundancy and propose an iterative, CMI-based algorithm for practical feature selection. We demonstrate the power of our CMI-based algorithm in comparison to the unconditional mutual information on benchmark examples and provide corresponding PID estimates to highlight how PID allows to quantify information contribution of features and their interactions in feature-selection problems.