Cross Validation
The Generalized Cross Validation Filter
Bottegal, Giulio, Pillonetto, Gianluigi
Generalized cross validation (GCV) is one of the most important approaches used to estimate parameters in the context of inverse problems and regularization techniques. A notable example is the determination of the smoothness parameter in splines. When the data are generated by a state space model, like in the spline case, efficient algorithms are available to evaluate the GCV score with complexity that scales linearly in the data set size. However, these methods are not amenable to on-line applications since they rely on forward and backward recursions. Hence, if the objective has been evaluated at time $t-1$ and new data arrive at time t, then O(t) operations are needed to update the GCV score. In this paper we instead show that the update cost is $O(1)$, thus paving the way to the on-line use of GCV. This result is obtained by deriving the novel GCV filter which extends the classical Kalman filter equations to efficiently propagate the GCV score over time. We also illustrate applications of the new filter in the context of state estimation and on-line regularized linear system identification.
Choice of K in K-fold Cross Validation for Classification in Financial Market
Cross Validation is often used as a tool for model selection across classifiers. As discussed in detail in the following paper https://ssrn.com/abstract However, one question often pops up: how to choose K in K-fold cross validation. The rule-of-thumb choice often suggested by literature based on non-financial market is K 10. The question is: is it true for Financial Market?
Cross-validation in R: a do-it-yourself and a black box approach
In my previous post, we saw that R-squared can lead to a misleading interpretation of the quality of our regression fit, in terms of prediction power. One thing that R-squared offers no protection against is overfitting. On the other hand, cross validation, by allowing us to have cases in our testing set that are different from the cases in our training set, inherently offers protection against overfittting. In this type of validation, one case in our data set is used as the test set, while the remaining cases are used as the training set. We iterate through the data set, until all cases have served as the test set.
Day22: Splitting data, calculating metrics, cross-validations
Today I want to showcase "better" and more tidy ways of using Python. The Jupyter Notebook for this little project is found here. Originally, I would slice the data by the index. The problem is that the slicing is not random. Scikit-learn has a function train_test_split() to randomly split the data into test and training sets.
Cross-validation
This text is a survey on cross-validation. We define all classical cross-validation procedures, and we study their properties for two different goals: estimating the risk of a given estimator, and selecting the best estimator among a given family. For the risk estimation problem, we compute the bias (which can also be corrected) and the variance of cross-validation methods. For estimator selection, we first provide a first-order analysis (based on expectations). Then, we explain how to take into account second-order terms (from variance computations, and by taking into account the usefulness of overpenalization). This allows, in the end, to provide some guidelines for choosing the best cross-validation method for a given learning problem.
Cross-Validation: Concept and Example in R
In Machine Learning, Cross-validation is a resampling method used for model evaluation to avoid testing a model on the same dataset on which it was trained. This is a common mistake, especially that a separate testing dataset is not always available. However, this usually leads to inaccurate performance measures (as the model will have an almost perfect score since it is being tested on the same data it was trained on). To avoid this kind of mistakes, cross validation is usually preferred. The concept of cross-validation is actually simple: Instead of using the whole dataset to train and then test on same data, we could randomly divide our data into training and testing datasets.
Improving Efficiency of SVM k -Fold Cross-Validation by Alpha Seeding
Wen, Zeyi (The University of Melbourne) | Li, Bin (South China University of Technology) | Kotagiri, Ramamohanarao (The University of Melbourne) | Chen, Jian (South China University of Technology) | Chen, Yawen (South China University of Technology) | Zhang, Rui (The University of Melbourne)
The k-fold cross-validation is commonly used to evaluate the effectiveness of SVMs with the selected hyper-parameters. It is known that the SVM k-fold cross-validation is expensive, since it requires training k SVMs. However, little work has explored reusing the h-th SVM for training the (h+1)-th SVM for improving the efficiency of k-fold cross-validation. In this paper, we propose three algorithms that reuse the h-th SVM for improving the efficiency of training the (h+1)-th SVM. Our key idea is to efficiently identify the support vectors and to accurately estimate their associated weights (also called alpha values) of the next SVM by using the previous SVM. Our experimental results show that our algorithms are several times faster than the k-fold cross-validation which does not make use of the previously trained SVM. Moreover, our algorithms produce the same results (hence same accuracy) as the k-fold cross-validation which does not make use of the previously trained SVM.
Cross validation Deep learning
It seems to me, that above definition of k-folded cross validation algorithm (from Deep Learning book by Ian Goodfellow and Yoshua Bengio and Aaron Courville, 2016) is inconsistent with the common definition of cross - validation. In above algorithm $e$ vector is the vector of loss function calculated for every particular example in the $D$ dataset, and then mean of vector $e$ is the estimation of generalization error. Whereas in standard definition of cross - validation, we calculate test error for each fold and then calculate average of them.
Assessing and tuning brain decoders: cross-validation, caveats, and guidelines
Varoquaux, Gaรซl, Raamana, Pradeep Reddy, Engemann, Denis, Hoyos-Idrobo, Andrรฉs, Schwartz, Yannick, Thirion, Bertrand
Decoding, ie prediction from brain images or signals, calls for empirical evaluation of its predictive power. Such evaluation is achieved via cross-validation, a method also used to tune decoders' hyper-parameters. This paper is a review on cross-validation procedures for decoding in neuroimaging. It includes a didactic overview of the relevant theoretical considerations. Practical aspects are highlighted with an extensive empirical study of the common decoders in within-and across-subject predictions, on multiple datasets --anatomical and functional MRI and MEG-- and simulations. Theory and experiments outline that the popular " leave-one-out " strategy leads to unstable and biased estimates, and a repeated random splits method should be preferred. Experiments outline the large error bars of cross-validation in neuroimaging settings: typical confidence intervals of 10%. Nested cross-validation can tune decoders' parameters while avoiding circularity bias. However we find that it can be more favorable to use sane defaults, in particular for non-sparse decoders.
Cross-validation based Nonlinear Shrinkage
Many machine learning algorithms require precise estimates of covariance matrices. The sample covariance matrix performs poorly in high-dimensional settings, which has stimulated the development of alternative methods, the majority based on factor models and shrinkage. Recent work of Ledoit and Wolf has extended the shrinkage framework to Nonlinear Shrinkage (NLS), a more powerful covariance estimator based on Random Matrix Theory. Our contribution shows that, contrary to claims in the literature, cross-validation based covariance matrix estimation (CVC) yields comparable performance at strongly reduced complexity and runtime. On two real world data sets, we show that the CVC estimator yields superior results than competing shrinkage and factor based methods.