In single-cell perturbation prediction, a central task is to forecast the effects of perturbing a gene unseen in the training data. The efficacy of such predictions depends on two factors: (1) the similarity of the target gene to those covered in the training data, which informs model (epistemic) uncertainty, and (2) the quality of the corresponding training data, which reflects data (aleatoric) uncertainty. Both factors are critical for determining the reliability of a prediction, particularly as gene perturbation is an inherently stochastic biochemical process. In this paper, we propose PRESCRIBE (PREdicting Single-Cell Response wIth Bayesian Estimation), a multivariate deep evidential regression framework designed to measure both sources of uncertainty jointly. Our analysis demonstrates that PRESCRIBE effectively estimates a confidence score for each prediction, which strongly correlates with its empirical accuracy. This capability enables the filtering of untrustworthy results, and in our experiments, it achieves steady accuracy improvements of over 3% compared to comparable baselines.

Protein fitness optimization involves finding a protein sequence that maximizes desired quantitative properties in a combinatorially large design space of possible sequences. Recent advances in steering protein generative models (e.g., diffusion models and language models) with labeled data offer a promising approach. However, most previous studies have optimized surrogate rewards and/or utilized large amounts of labeled data for steering, making it unclear how well existing methods perform and compare to each other in real-world optimization campaigns where fitness is measured through low-throughput wet-lab assays. In this study, we explore fitness optimization using small amounts (hundreds) of labeled sequencefitness pairs and comprehensively evaluate strategies such as classifier guidance and posterior sampling for guiding generation from different discrete diffusion models of protein sequences. We also demonstrate how guidance can be integrated into adaptive sequence selection akin to Thompson sampling in Bayesian optimization, showing that plug-and-play guidance strategies offer advantages over alternatives such as reinforcement learning with protein language models. Overall, we provide practical insights into how to effectively steer modern generative models for next-generation protein fitness optimization.

Leveraging the lottery ticket hypothesis, novel training GMV pipeline, activates which diverse includes sub-net mix works ed-vie within w generation, a single GNN and multi-vie through w a decomposition and learning. This approach simultaneously broadens "views" from the data, model, and optimization perspectives during training to enhance the generalization additional prediction capabilities heads of into GNNs.

Emotion recognition based on physiological signals plays a vital role in psychological health and human-computer interaction, particularly with the substantial advances in multimodal emotion recognition techniques. However, two key challenges remain unresolved: 1) how to effectively model the intra-modal long-range dependencies and inter-modal correlations in multimodal physiological emotion signals, and 2) how to address the performance limitations resulting from missing multimodal data. In this paper, we propose a multimodal bidirectional Mamba (BiMamba) network with test-time adaptation (TTA) for emotion recognition named BiM-TTA.

The next frontier of online advertising is revenue generation from LLM-generated content. We consider a setting where advertisers aim to influence the responses of an LLM, while platforms seek to maximize advertiser value and ensure user satisfaction. The challenge is that advertisers' preferences generally conflict with those of the user, and advertisers may misreport their preferences. To address this, we introduce MOSAIC, an auction mechanism that ensures that truthful reporting is a dominant strategy for advertisers and that aligns the utility of each advertiser with their contribution to social welfare. Importantly, the mechanism operates without LLM fine-tuning or access to model weights and provably converges to the output of the optimally fine-tuned LLM as computational resources increase. Additionally, it can incorporate contextual information about advertisers, which significantly improves social welfare. Via experiments with publicly available LLMs, we show that MOSAIC leads to high advertiser value and platform revenue with low computational costs. While our motivating application is online advertising, our mechanism can be applied in any setting with monetary transfers, making it a general-purpose solution for truthfully aggregating the preferences of selfinterested agents over LLM-generated replies.

Recent advances in deep learning have driven rapid progress in time series forecasting, yet many state-of-the-art models continue to struggle with robust performance in real-world applications, even when they achieve strong results on standard benchmark datasets. This persistent gap can be attributed to the blackbox nature of deep learning architectures and the inherent limitations of current evaluation frameworks, which frequently lack the capacity to provide clear, quantitative insights into the specific strengths and weaknesses of different models, thereby complicating the selection of appropriate models for particular forecasting scenarios. To address these issues, we propose a synthetic data-driven evaluation paradigm, SynTSBench, that systematically assesses fundamental modeling capabilities of time series forecasting models through programmable feature configuration. Our framework isolates confounding factors and establishes an interpretable evaluation system with three core analytical dimensions: (1) temporal feature decomposition and capability mapping, which enables systematic evaluation of model capacities to learn specific pattern types; (2) robustness analysis under data irregularities, which quantifies noise tolerance thresholds and anomaly recovery capabilities; and (3) theoretical optimum benchmarking, which establishes performance boundaries for each pattern type--enabling direct comparison between model predictions and mathematical optima. Our experiments show that current deep learning models do not universally approach optimal baselines across all types of temporal features.

However, their adoption is limited by two main challenges: the accuracy gap compared to large-scale networks during training, and discrepancies between simulated and fabricated systems that further degrade accuracy. While previous work has proposed end-to-end optimizations for specific datasets (e.g., MNIST) and optical systems, these approaches typically lack generalization across tasks and hardware designs. To address these limitations, we propose a task-agnostic and hardware-agnostic pipeline that supports image classification and segmentation across diverse optical systems. To assist optical system design before training, we design the metasurface layout based on fabrication constraints. For training, we introduce Neural Tangent Knowledge Distillation (NTKD), which aligns optical models with electronic teacher networks, thereby narrowing the accuracy gap. After fabrication, NTKD also guides fine-tuning of the digital backend to compensate for implementation errors. Experiments on multiple datasets (e.g., MNIST, CIFAR, Carvana Image Masking Dataset) and hardware configurations show that our pipeline consistently improves ONN performance and enables practical deployment in both pre-fabrication simulations and physical implementations.

With increasing regulations on private data usage in AI systems, machine unlearning has emerged as a critical solution for selectively removing sensitive information from trained models while preserving their overall utility. While many existing unlearning methods rely on the retain data to mitigate the performance decline caused by forgetting, such data may not always be available (retain-free) in realworld scenarios. To address this challenge posed by retain-free unlearning, we introduce RUAGO, utilizing adversarial soft labels to mitigate over-unlearning and a generative model pretrained on out-of-distribution (OOD) data to effectively distill the original model's knowledge. We introduce a progressive sampling strategy to incrementally increase synthetic data complexity, coupled with an inversionbased alignment step that ensures the synthetic data closely matches the original training distribution. Our extensive experiments on multiple benchmark datasets and architectures demonstrate that our approach consistently outperforms existing retain-free methods and achieves comparable or superior performance relative to retain-based approaches, demonstrating its effectiveness and practicality in real-world, data-constrained environments.

Capturing effective long-range information propagation remains a fundamental yet challenging problem in graph representation learning. Motivated by this, we introduce SONAR, a novel GNN architecture inspired by the dynamics of wave propagation in continuous media. SONAR models information flow on graphs as oscillations governed by the wave equation, allowing it to maintain effective propagation dynamics over long distances. By integrating adaptive edge resistances and state-dependent external forces, our method balances conservative and nonconservative behaviors, improving the ability to learn more complex dynamics. We provide a rigorous theoretical analysis of SONAR's energy conservation and information propagation properties, demonstrating its capacity to address the long-range propagation problem. Extensive experiments on synthetic and realworld benchmarks confirm that SONAR achieves state-of-the-art performance, particularly on tasks requiring long-range information exchange.

Decentralized bilevel optimization has garnered significant attention due to its critical role in solving large-scale machine learning problems. However, existing methods often rely on prior knowledge of problem parameters--such as smoothness, convexity, or communication network topologies--to determine appropriate stepsizes. In practice, these problem parameters are typically unavailable, leading to substantial manual effort for hyperparameter tuning. In this paper, we propose AdaSDBO, a fully problem-parameter-free algorithm for decentralized bilevel optimization with a single-loop structure. AdaSDBO leverages adaptive stepsizes based on cumulative gradient norms to update all variables simultaneously, dynamically adjusting its progress and eliminating the need for problem-specific hyperparameter tuning. Through rigorous theoretical analysis, we establish that AdaSDBO achieves a convergence rate of eO 1T, matching the performance of well-tuned state-of-the-art methods up to polylogarithmic factors. Extensive numerical experiments demonstrate that AdaSDBO delivers competitive performance compared to existing decentralized bilevel optimization methods while exhibiting remarkable robustness across diverse stepsize configurations.