Antibody lead optimization is inherently a multi-objective challenge in drug discovery. Achieving a balance between different drug-like properties is crucial for the development of viable candidates, and this search becomes exponentially challenging as desired properties grow. The ever-growing zoo of sophisticated in silico tools for predicting antibody properties calls for an efficient joint optimization procedure to overcome resource-intensive sequential filtering pipelines. We present BOAT, a versatile Bayesian optimization framework for multi-property antibody engineering. Our `plug-and-play' framework couples uncertainty-aware surrogate modeling with a genetic algorithm to jointly optimize various predicted antibody traits while enabling efficient exploration of sequence space. Through systematic benchmarking against genetic algorithms and newer generative learning approaches, we demonstrate competitive performance with state-of-the-art methods for multi-objective protein optimization. We identify clear regimes where surrogate-driven optimization outperforms expensive generative approaches and establish practical limits imposed by sequence dimensionality and oracle costs.

This article presents an argument for why quantum computers could unlock new methods for machine learning. We argue that spectral methods, in particular those that learn, regularise, or otherwise manipulate the Fourier spectrum of a machine learning model, are often natural for quantum computers. For example, if a generative machine learning model is represented by a quantum state, the Quantum Fourier Transform allows us to manipulate the Fourier spectrum of the state using the entire toolbox of quantum routines, an operation that is usually prohibitive for classical models. At the same time, spectral methods are surprisingly fundamental to machine learning: A spectral bias has recently been hypothesised to be the core principle behind the success of deep learning; support vector machines have been known for decades to regularise in Fourier space, and convolutional neural nets build filters in the Fourier space of images. Could, then, quantum computing open fundamentally different, much more direct and resource-efficient ways to design the spectral properties of a model? We discuss this potential in detail here, hoping to stimulate a direction in quantum machine learning research that puts the question of ``why quantum?'' first.

We study adaptive pooling under predictive heterogeneity in high-dimensional multivariate time series forecasting, where global models improve statistical efficiency but may fail to capture heterogeneous predictive structure, while naive specialization can induce negative transfer. We formulate adaptive pooling as a statistical decision problem and propose a validation-driven framework that determines when and how specialization should be applied. Rather than grouping series based on representation similarity, we define partitions through out-of-sample predictive performance, thereby aligning data organization with predictive risk, defined as expected out-of-sample loss and approximated via validation error. Cluster assignments are iteratively updated using validation losses for both point (Huber) and probabilistic (pinball) forecasting, improving robustness to heavy-tailed errors and local anomalies. To ensure reliability, we introduce a leakage-free fallback mechanism that reverts to a global model whenever specialization fails to improve validation performance, providing a safeguard against performance degradation under a strict training-validation-test protocol. Experiments on large-scale traffic datasets demonstrate consistent improvements over strong baselines while avoiding degradation when heterogeneity is weak. Overall, the proposed framework provides a principled and practically reliable approach to adaptive pooling in high-dimensional forecasting problems.

This paper studies continuous-time stochastic control problems whose controlled states are fully non-Markovian and depend on unknown model parameters. Such problems arise naturally in path-dependent stochastic differential equations, rough-volatility hedging, and systems driven by fractional Brownian motion. Building on the discrete skeleton approach developed in earlier work, we propose a Monte Carlo learning methodology for the associated embedded backward dynamic programming equation. Our main contribution is twofold. First, we construct explicit dominating training laws and Radon--Nikodym weights for several representative classes of non-Markovian controlled systems. This yields an off-model training architecture in which a fixed synthetic dataset is generated under a reference law, while the dynamic programming operators associated with a target model are recovered by importance sampling. Second, we use this structure to design an adaptive update mechanism under parametric model uncertainty, so that repeated recalibration can be performed by reweighting the same training sample rather than regenerating new trajectories. For fixed parameters, we establish non-asymptotic error bounds for the approximation of the embedded dynamic programming equation via deep neural networks. For adaptive learning, we derive quantitative estimates that separate Monte Carlo approximation error from model-risk error. Numerical experiments illustrate both the off-model training mechanism and the adaptive importance-sampling update in structured linear-quadratic examples.

The statistical essence of the Transformer architecture has long remained elusive: Is it a universal approximator, or a neural network version of known computational algorithms? Through rigorous algebraic proof, we show that the latter better describes Transformer's basic nature: Ordinary Least Squares (OLS) is a special case of the single-layer Linear Transformer. Using the spectral decomposition of the empirical covariance matrix, we construct a specific parameter setting where the attention mechanism's forward pass becomes mathematically equivalent to the OLS closed-form projection. This means attention can solve the problem in one forward pass, not by iterating. Building upon this prototypical case, we further uncover a decoupled slow and fast memory mechanism within Transformers. Finally, the evolution from our established linear prototype to standard Transformers is discussed. This progression facilitates the transition of the Hopfield energy function from linear to exponential memory capacity, thereby establishing a clear continuity between modern deep architectures and classical statistical inference.

Background: Single-cell RNA sequencing (scRNA-seq) enables gene expression profiling at cellular resolution but is inherently affected by sparsity caused by dropout events, where expressed genes are recorded as zeros due to technical limitations. These artifacts distort gene expression distributions and compromise downstream analyses. Numerous imputation methods have been proposed to recover latent transcriptional signals. These methods range from traditional statistical models to deep learning (DL)-based methods. However, their comparative performance remains unclear, as existing benchmarks evaluate only a limited subset of methods, datasets, and downstream analyses. Results: We present a comprehensive benchmark of 15 scRNA-seq imputation methods spanning 7 methodological categories, including traditional and DL-based methods. Methods are evaluated across 30 datasets from 10 experimental protocols on 6 downstream analyses. Results show that traditional methods, such as model-based, smoothing-based, and low-rank matrix-based methods, generally outperform DL-based methods, including diffusion-based, GAN-based, GNN-based, and autoencoder-based methods. In addition, strong performance in numerical gene expression recovery does not necessarily translate into improved biological interpretability in downstream analyses, including cell clustering, differential expression analysis, marker gene analysis, trajectory analysis, and cell type annotation. Furthermore, method performance varies substantially across datasets, protocols, and downstream analyses, with no single method consistently outperforming others. Conclusions: Our findings provide practical guidance for selecting imputation methods tailored to specific analytical objectives and underscore the importance of task-specific evaluation when assessing imputation performance in scRNA-seq data analysis.

Adversarial training (AT) is an effective defense for large language models (LLMs) against jailbreak attacks, but performing AT on LLMs is costly. To improve the efficiency of AT for LLMs, recent studies propose continuous AT (CAT) that searches for adversarial inputs within the continuous embedding space of LLMs during AT. While CAT has achieved empirical success, its underlying mechanism, i.e., why adversarial perturbations in the embedding space can help LLMs defend against jailbreak prompts synthesized in the input token space, remains unknown. This paper presents the first theoretical analysis of CAT on LLMs based on in-context learning (ICL) theory. For linear transformers trained with adversarial examples from the embedding space on in-context linear regression tasks, we prove a robust generalization bound that has a negative correlation with the perturbation radius in the embedding space. This clearly explains why CAT can defend against jailbreak prompts from the LLM's token space. Further, the robust bound shows that the robustness of an adversarially trained LLM is closely related to the singular values of its embedding matrix. Based on this, we propose to improve LLM CAT by introducing an additional regularization term, which depends on singular values of the LLM's embedding matrix, into the objective function of CAT. Experiments on real-world LLMs demonstrate that our method can help LLMs achieve a better jailbreak robustness-utility tradeoff. The code is available at https://github.com/fshp971/continuous-adv-icl.

Predicting counterfactual outcomes in longitudinal data, where sequential treatment decisions heavily depend on evolving patient states, is critical yet notoriously challenging due to complex time-dependent confounding and inadequate uncertainty quantification in existing methods. We introduce the Causal Diffusion Model (CDM), the first denoising diffusion probabilistic approach explicitly designed to generate full probabilistic distributions of counterfactual outcomes under sequential interventions. CDM employs a novel residual denoising architecture with relational self-attention, capturing intricate temporal dependencies and multimodal outcome trajectories without requiring explicit adjustments (e.g., inverse-probability weighting or adversarial balancing) for confounding. In rigorous evaluation on a pharmacokinetic-pharmacodynamic tumor-growth simulator widely adopted in prior work, CDM consistently outperforms state-of-the-art longitudinal causal inference methods, achieving a 15-30% relative improvement in distributional accuracy (1-Wasserstein distance) while maintaining competitive or superior point-estimate accuracy (RMSE) under high-confounding regimes. By unifying uncertainty quantification and robust counterfactual prediction in complex, sequentially confounded settings, without tailored deconfounding, CDM offers a flexible, high-impact tool for decision support in medicine, policy evaluation, and other longitudinal domains.

The deployment of deep neural networks in safety-critical systems necessitates reliable and efficient uncertainty quantification (UQ). A practical and widespread strategy for UQ is repurposing stochastic regularizers as scalable approximate Bayesian inference methods, such as Monte Carlo Dropout (MCD) and MC-DropBlock (MCDB). However, this paradigm remains under-explored for Stochastic Depth (SD), a regularizer integral to the residual-based backbones of most modern architectures. While prior work demonstrated its empirical promise for segmentation, a formal theoretical connection to Bayesian variational inference and a benchmark on complex, multi-task problems like object detection are missing. In this paper, we first provide theoretical insights connecting Monte Carlo Stochastic Depth (MCSD) to principled approximate variational inference. We then present the first comprehensive empirical benchmark of MCSD against MCD and MCDB on state-of-the-art detectors (YOLO, RT-DETR) using the COCO and COCO-O datasets. Our results position MCSD as a robust and computationally efficient method that achieves highly competitive predictive accuracy (mAP), notably yielding slight improvements in calibration (ECE) and uncertainty ranking (AUARC) compared to MCD. We thus establish MCSD as a theoretically-grounded and empirically-validated tool for efficient Bayesian approximation in modern deep learning.

It involves 4chan, of all places. In July 2020, 4chan's video-game discussion board looked much like the rest of the notorious online forum. There were elaborate, libidinal fantasies involving "whores" and "dragon cum," and comments on how long a gamer had to wait "before my dick can get up for another beating," as one put it. And yet, as the gamers discussed such things, they were also making a discovery of significance to the AI industry. Some of them were playing, a new text-based role-playing game that was essentially an AI version of .