Deep Learning
AmpLyze: A Deep Learning Model for Predicting the Hemolytic Concentration
Qiu, Peng, Feng, Hanqi, Zhang, Meng-Chun, Poczos, Barnabas
Red-blood-cell lysis (HC50) is the principal safety barrier for antimicrobial-peptide (AMP) therapeutics, yet existing models only say "toxic" or "non-toxic." AmpLyze closes this gap by predicting the actual HC50 value from sequence alone and explaining the residues that drive toxicity. The model couples residue-level ProtT5/ESM2 embeddings with sequence-level descriptors in dual local and global branches, aligned by a cross-attention module and trained with log-cosh loss for robustness to assay noise. The optimal AmpLyze model reaches a PCC of 0.756 and an MSE of 0.987, outperforming classical regressors and the state-of-the-art. Ablations confirm that both branches are essential, and cross-attention adds a further 1% PCC and 3% MSE improvement. Expected-Gradients attributions reveal known toxicity hotspots and suggest safer substitutions. By turning hemolysis assessment into a quantitative, sequence-based, and interpretable prediction, AmpLyze facilitates AMP design and offers a practical tool for early-stage toxicity screening.
FEAT: A Preference Feedback Dataset through a Cost-Effective Auto-Generation and Labeling Framework for English AI Tutoring
Seo, Hyein, Hwang, Taewook, Lee, Yohan, Jung, sangkeun
In English education tutoring, teacher feedback is essential for guiding students. Recently, AI-based tutoring systems have emerged to assist teachers; however, these systems require high-quality and large-scale teacher feedback data, which is both time-consuming and costly to generate manually. In this study, we propose FEAT, a cost-effective framework for generating teacher feedback, and have constructed three complementary datasets: (1) DIRECT-Manual (DM), where both humans and large language models (LLMs) collaboratively generate high-quality teacher feedback, albeit at a higher cost; (2) DIRECT-Generated (DG), an LLM-only generated, cost-effective dataset with lower quality;, and (3) DIRECT-Augmented (DA), primarily based on DG with a small portion of DM added to enhance quality while maintaining cost-efficiency. Experimental results showed that incorporating a small portion of DM (5-10%) into DG leads to superior performance compared to using 100% DM alone.
PromptTSS: A Prompting-Based Approach for Interactive Multi-Granularity Time Series Segmentation
Chang, Ching, Lo, Ming-Chih, Peng, Wen-Chih, Chen, Tien-Fu
Multivariate time series data, collected across various fields such as manufacturing and wearable technology, exhibit states at multiple levels of granularity, from coarse-grained system behaviors to fine-grained, detailed events. Effectively segmenting and integrating states across these different granularities is crucial for tasks like predictive maintenance and performance optimization. However, existing time series segmentation methods face two key challenges: (1) the inability to handle multiple levels of granularity within a unified model, and (2) limited adaptability to new, evolving patterns in dynamic environments. To address these challenges, we propose PromptTSS, a novel framework for time series segmentation with multi-granularity states. PromptTSS uses a unified model with a prompting mechanism that leverages label and boundary information to guide segmentation, capturing both coarse- and fine-grained patterns while adapting dynamically to unseen patterns. Experiments show PromptTSS improves accuracy by 24.49% in multi-granularity segmentation, 17.88% in single-granularity segmentation, and up to 599.24% in transfer learning, demonstrating its adaptability to hierarchical states and evolving time series dynamics. Our code is available at https://github.com/blacksnail789521/PromptTSS.
Prompt Attacks Reveal Superficial Knowledge Removal in Unlearning Methods
Jang, Yeonwoo, Hossain, Shariqah, Sreevatsa, Ashwin, Cruz, Diogo
In this work, we demonstrate that certain machine unlearning methods may fail under straightforward prompt attacks. We systematically evaluate eight unlearning techniques across three model families using output-based, logit-based, and probe analysis to assess the extent to which supposedly unlearned knowledge can be retrieved. While methods like RMU and TAR exhibit robust unlearning, ELM remains vulnerable to specific prompt attacks (e.g., prepending Hindi filler text to the original prompt recovers 57.3% accuracy). Our logit analysis further indicates that unlearned models are unlikely to hide knowledge through changes in answer formatting, given the strong correlation between output and logit accuracy. These findings challenge prevailing assumptions about unlearning effectiveness and highlight the need for evaluation frameworks that can reliably distinguish between genuine knowledge removal and superficial output suppression. To facilitate further research, we publicly release our evaluation framework to easily evaluate prompting techniques to retrieve unlearned knowledge.
Data Pruning by Information Maximization
Tan, Haoru, Wu, Sitong, Huang, Wei, Zhao, Shizhen, Qi, Xiaojuan
In this paper, we present InfoMax, a novel data pruning method, also known as coreset selection, designed to maximize the information content of selected samples while minimizing redundancy. By doing so, InfoMax enhances the overall informativeness of the coreset. The information of individual samples is measured by importance scores, which capture their influence or difficulty in model learning. To quantify redundancy, we use pairwise sample similarities, based on the premise that similar samples contribute similarly to the learning process. We formalize the coreset selection problem as a discrete quadratic programming (DQP) task, with the objective of maximizing the total information content, represented as the sum of individual sample contributions minus the redundancies introduced by similar samples within the coreset. To ensure practical scalability, we introduce an efficient gradient-based solver, complemented by sparsification techniques applied to the similarity matrix and dataset partitioning strategies. This enables InfoMax to seamlessly scale to datasets with millions of samples. Extensive experiments demonstrate the superior performance of InfoMax in various data pruning tasks, including image classification, vision-language pre-training, and instruction tuning for large language models. Code is available at https://github.com/hrtan/InfoMax.
Is Quantum Optimization Ready? An Effort Towards Neural Network Compression using Adiabatic Quantum Computing
Wang, Zhehui, Choong, Benjamin Chen Ming, Huang, Tian, Gerlinghoff, Daniel, Goh, Rick Siow Mong, Liu, Cheng, Luo, Tao
Quantum optimization is the most mature quantum computing technology to date, providing a promising approach towards efficiently solving complex combinatorial problems. Methods such as adiabatic quantum computing (AQC) have been employed in recent years on important optimization problems across various domains. In deep learning, deep neural networks (DNN) have reached immense sizes to support new predictive capabilities. Optimization of large-scale models is critical for sustainable deployment, but becomes increasingly challenging with ever-growing model sizes and complexity. While quantum optimization is suitable for solving complex problems, its application to DNN optimization is not straightforward, requiring thorough reformulation for compatibility with commercially available quantum devices. In this work, we explore the potential of adopting AQC for fine-grained pruning-quantization of convolutional neural networks. We rework established heuristics to formulate model compression as a quadratic unconstrained binary optimization (QUBO) problem, and assess the solution space offered by commercial quantum annealing devices. Through our exploratory efforts of reformulation, we demonstrate that AQC can achieve effective compression of practical DNN models. Experiments demonstrate that adiabatic quantum computing (AQC) not only outperforms classical algorithms like genetic algorithms and reinforcement learning in terms of time efficiency but also excels at identifying global optima.
MAPS: A Multilingual Benchmark for Global Agent Performance and Security
Hofman, Omer, Brokman, Jonathan, Rachmil, Oren, Bose, Shamik, Pahuja, Vikas, Shimizu, Toshiya, Starostina, Trisha, Marchisio, Kelly, Goldfarb-Tarrant, Seraphina, Vainshtein, Roman
Agentic AI systems, which build on Large Language Models (LLMs) and interact with tools and memory, have rapidly advanced in capability and scope. Yet, since LLMs have been shown to struggle in multilingual settings, typically resulting in lower performance and reduced safety, agentic systems risk inheriting these limitations. This raises concerns about the accessibility of such systems, as users interacting in languages other than English may encounter unreliable or security-critical agent behavior. Despite growing interest in evaluating agentic AI, existing benchmarks focus exclusively on English, leaving multilingual settings unexplored. To address this gap, we propose MAPS, a multilingual benchmark suite designed to evaluate agentic AI systems across diverse languages and tasks. MAPS builds on four widely used agentic benchmarks - GAIA (real-world tasks), SWE-bench (code generation), MATH (mathematical reasoning), and the Agent Security Benchmark (security). We translate each dataset into eleven diverse languages, resulting in 805 unique tasks and 9,660 total language-specific instances - enabling a systematic analysis of the multilingual effect on AI agents' performance and robustness. Empirically, we observe degradation in both performance and security when transitioning from English to other languages, with severity varying by task and correlating with the amount of translated input. Building on these findings, we provide actionable recommendations to guide agentic AI systems development and assessment under multilingual settings. This work establishes the first standardized evaluation framework for multilingual agentic AI, encouraging future research towards equitable, reliable, and accessible agentic AI. MAPS benchmark suite is publicly available at https://huggingface.co/datasets/Fujitsu-FRE/MAPS
CAPTURe: Evaluating Spatial Reasoning in Vision Language Models via Occluded Object Counting
Pothiraj, Atin, Stengel-Eskin, Elias, Cho, Jaemin, Bansal, Mohit
Recognizing and reasoning about occluded (partially or fully hidden) objects is vital to understanding visual scenes, as occlusions frequently occur in real-world environments and act as obstacles for spatial comprehension. To test models' ability to reason about multiple occluded objects, we introduce a novel task, Counting Amodally for Patterns Through Unseen REgions (CAPTURe), which requires a model to count objects arranged in a pattern by inferring how the pattern continues behind an occluder (an object which blocks parts of the scene). CAPTURe requires both recognizing visual patterns and reasoning, making it a useful testbed for evaluating vision-language models (VLMs) on whether they understand occluded patterns and possess spatial understanding skills. By requiring models to reason about occluded objects, CAPTURe also tests VLMs' ability to form world models that would allow them to fill in missing information. CAPTURe consists of two parts: (1) CAPTURe-real, with manually filtered images of real objects in patterns and (2) CAPTURe-synthetic, a controlled diagnostic with generated patterned images. We evaluate four strong VLMs (GPT-4o, Intern-VL2, Molmo, and Qwen2-VL) on CAPTURe, finding that models struggle to count on both occluded and unoccluded patterns. Crucially, we find that models perform worse with occlusion, suggesting that VLMs are also deficient in inferring unseen spatial relationships: even the strongest VLMs like GPT-4o fail to count with occlusion. In contrast, we find that humans achieve very little error on CAPTURe. We also find that providing auxiliary information of occluded object locations increases performance, underscoring that the model error comes both from an inability to handle occlusion as well as difficulty in counting in images. Code and data: https://github.com/atinpothiraj/CAPTURe
FinSage: A Multi-aspect RAG System for Financial Filings Question Answering
Wang, Xinyu, Chi, Jijun, Tai, Zhenghan, Kwok, Tung Sum Thomas, Li, Muzhi, Li, Zhuhong, He, Hailin, Hua, Yuchen, Lu, Peng, Wang, Suyuchen, Wu, Yihong, Huang, Jerry, Tian, Jingrui, Mo, Fengran, Cui, Yufei, Zhou, Ling
Leveraging large language models in real-world settings often entails a need to utilize domain-specific data and tools in order to follow the complex regulations that need to be followed for acceptable use. Within financial sectors, modern enterprises increasingly rely on Retrieval-Augmented Generation (RAG) systems to address complex compliance requirements in financial document workflows. However, existing solutions struggle to account for the inherent heterogeneity of data (e.g., text, tables, diagrams) and evolving nature of regulatory standards used in financial filings, leading to compromised accuracy in critical information extraction. We propose the FinSage framework as a solution, utilizing a multi-aspect RAG framework tailored for regulatory compliance analysis in multi-modal financial documents. FinSage introduces three innovative components: (1) a multi-modal pre-processing pipeline that unifies diverse data formats and generates chunk-level metadata summaries, (2) a multi-path sparse-dense retrieval system augmented with query expansion (HyDE) and metadata-aware semantic search, and (3) a domain-specialized re-ranking module fine-tuned via Direct Preference Optimization (DPO) to prioritize compliance-critical content. Extensive experiments demonstrate that FinSage achieves an impressive recall of 92.51% on 75 expert-curated questions derived from surpasses the best baseline method on the FinanceBench question answering datasets by 24.06% in accuracy. Moreover, FinSage has been successfully deployed as financial question-answering agent in online meetings, where it has already served more than 1,200 people.
Rethinking Client-oriented Federated Graph Learning
Chen, Zekai, Li, Xunkai, Zhu, Yinlin, Li, Rong-Hua, Wang, Guoren
As a new distributed graph learning paradigm, Federated Graph Learning (FGL) facilitates collaborative model training across local systems while preserving data privacy. We review existing FGL approaches and categorize their optimization mechanisms into: (1) Server-Client (S-C), where clients upload local model parameters for server-side aggregation and global updates; (2) Client-Client (C-C), which allows direct exchange of information between clients and customizing their local training process. We reveal that C-C shows superior potential due to its refined communication structure. However, existing C-C methods broadcast redundant node representations, incurring high communication costs and privacy risks at the node level. To this end, we propose FedC4, which combines graph Condensation with C-C Collaboration optimization. Specifically, FedC4 employs graph condensation technique to refine the knowledge of each client's graph into a few synthetic embeddings instead of transmitting node-level knowledge. Moreover, FedC4 introduces three novel modules that allow the source client to send distinct node representations tailored to the target client's graph properties. Experiments on eight public real-world datasets show that FedC4 outperforms state-of-the-art baselines in both task performance and communication cost. Our code is now available on https://github.com/Ereshkigal1/FedC4.