Deep Learning
Equilibrated adaptive learning rates for non-convex optimization
Yann Dauphin, Harm de Vries, Yoshua Bengio
Parameter-specific adaptive learning rate methods are computationally efficient ways to reduce the ill-conditioning problems encountered when training large deep networks. Following recent work that strongly suggests that most of the critical points encountered when training such networks are saddle points, we find how considering the presence of negative eigenvalues of the Hessian could help us design better suited adaptive learning rate schemes. We show that the popular Jacobi preconditioner has undesirable behavior in the presence of both positive and negative curvature, and present theoretical and empirical evidence that the so-called equilibration preconditioner is comparatively better suited to non-convex problems. We introduce a novel adaptive learning rate scheme, called ESGD, based on the equilibration preconditioner. Our experiments show that ESGD performs as well or better than RMSProp in terms of convergence speed, always clearly improving over plain stochastic gradient descent.
Bayesian Layers: A Module for Neural Network Uncertainty
Dustin Tran, Mike Dusenberry, Mark van der Wilk, Danijar Hafner
We describe Bayesian Layers, a module designed for fast experimentation with neural network uncertainty. It extends neural network libraries with drop-in replacements for common layers. This enables composition via a unified abstraction over deterministic and stochastic functions and allows for scalability via the underlying system. These layers capture uncertainty over weights (Bayesian neural nets), pre-activation units (dropout), activations ("stochastic output layers"), or the function itself (Gaussian processes). They can also be reversible to propagate uncertainty from input to output. We include code examples for common architectures such as Bayesian LSTMs, deep GPs, and flow-based models. As demonstration, we fit a 5-billion parameter "Bayesian Transformer" on 512 TPUv2 cores for uncertainty in machine translation and a Bayesian dynamics model for model-based planning. Finally, we show how Bayesian Layers can be used within the Edward2 language for probabilistic programming with stochastic processes.
On the equivalence of molecular graph convolution and molecular wave function with poor basis set
In this study, we demonstrate that the linear combination of atomic orbitals (LCAO), an approximation introduced by Pauling and Lennard-Jones in the 1920s, corresponds to graph convolutional networks (GCNs) for molecules. However, GCNs involve unnecessary nonlinearity and deep architecture. We also verify that molecular GCNs are based on a poor basis function set compared with the standard one used in theoretical calculations or quantum chemical simulations. From these observations, we describe the quantum deep field (QDF), a machine learning (ML) model based on an underlying quantum physics, in particular the density functional theory (DFT). We believe that the QDF model can be easily understood because it can be regarded as a single linear layer GCN. Moreover, it uses two vanilla feedforward neural networks to learn an energy functional and a Hohenberg-Kohn map that have nonlinearities inherent in quantum physics and the DFT. For molecular energy prediction tasks, we demonstrated the viability of an "extrapolation," in which we trained a QDF model with small molecules, tested it with large molecules, and achieved high extrapolation performance. We believe that we should move away from the competition of interpolation accuracy within benchmark datasets and evaluate ML models based on physics using an extrapolation setting; this will lead to reliable and practical applications, such as fast, large-scale molecular screening for discovering effective materials.
SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networks Fabian B. Fuchs
We introduce the SE(3)-Transformer, a variant of the self-attention module for 3D point clouds and graphs, which is equivariant under continuous 3D roto-translations. Equivariance is important to ensure stable and predictable performance in the presence of nuisance transformations of the data input.