Deep Learning
Deep Multitask Learning for Mixed-Type Outcomes with Shared Sparsity
Li, Huichao, Wang, Tong, Zhang, Sanguo, Ma, Shuangge
Most existing multitask learning approaches are limited by their reliance on task-specific loss functions tailored to the scale and type of each outcome. When outcomes differ across tasks, these losses are generally not directly comparable, which makes it difficult to formulate a unified objective and may limit information sharing across tasks. We propose a multitask transformation framework in which task-specific responses may differ through unknown monotone transformations. Motivated by high-dimensional biological applications in which the predictor dimension may diverge with the sample size while only a common subset of predictors is informative, we consider shared sparsity across tasks. Under this framework, we estimate the target functions and identify important predictors by optimizing a smoothed rank-based criterion with a group-Lasso penalty, implemented through a multitask deep neural network with a shared first layer. We establish the nonasymptotic excess-risk bounds, and variable-selection consistency for the proposed estimator. Simulation studies show that the proposed method achieves competitive prediction and variable-selection performance compared with competing approaches. Analyses of gene-expression studies with continuous, binary, and mixed outcomes further illustrate that the proposed method improves prediction and identifies biologically meaningful shared predictors.
Ghost in the Kernel: In-Context Learning with Efficient Transformers via Domain Generalization
Transformer-based large models have demonstrated remarkable generalization abilities across different tasks by leveraging a context-aware attention module for in-context learning. With richer context, transformers adapt more effectively to the current use case without any parameter updates. However, the quadratic computational and memory complexity with respect to context length significantly slows data processing in softmax transformers. Linear transformers were proposed to address this issue by reducing the complexity to linear dependence on context length, but the design and understanding of the feature mapping in linear attention, from a theoretical viewpoint, remain unclear. In this paper, we investigate the approximation and generalization abilities of linear transformers under a two-staged sampling process from domain generalization. We show that linear transformers perform in-context learning as learning a mapping from context distributions to response functions. A dimension-independent convergence rate is obtained for our generalization analysis, which also exhibits the tradeoff between the regularities of data distributions and latent features. Guided by our theoretical framework, we propose a new perspective on activation and loss design for linearizing pretrained softmax large language models.
Prototype Language Models
Ley, Dan, Nguyen, Giang, Lakkaraju, Himabindu, Adebayo, Julius
Knowing which training examples drive outputs is fundamental to auditing, correcting, and understanding language models, yet for modern LLMs this remains expensive, approximate, and largely post-hoc. Standard language models generate tokens through a dense network pathway, causing training data's influence to be distributed across parameters rather than organized along explicit, traceable components. We introduce a prototype language model architecture, Prototypes for Interpretable Sequence Modeling (PRISM), that forms each prediction via a sparse, non-negative mixture of learned prototypes, trained with clustering objectives that anchor each prototype to coherent neighborhoods of training examples. Across architectures from 130M to 1.6B parameters trained on up to 50B tokens, prototype language models either surpass or remain within 2.5 percentage points on average downstream accuracy of matched dense baselines. We show that sparse prototype structure localizes curvature in the loss landscape, yielding a more tractable Hessian and enabling training data attribution that is ~500x faster than post hoc baselines when consuming equivalent memory. Calibrating linear prototype controllers can improve downstream accuracy by roughly 3 points while tracing those corrections back to training neighborhoods, and targeted prototype suppression can remove model behaviors without finetuning or measurable loss in generation quality.
Active-GRPO: Adaptive Imitation and Self-Improving Reasoning for Molecular Optimization
Liu, Xuefeng, Cao, Mingxuan, Huang, Qinan, Brettin, Thomas, Stevens, Rick, Cong, Le
Scientific reasoning is an increasingly important capability of large language models, yet improving the robustness and efficiency of training such reasoning remains a key open challenge. We study this problem in instruction-based molecular optimization, where answer-only supervised fine-tuning (SFT) collapses multi-step reasoning and reinforcement learning with verifiable rewards (RLVR) suffers from sparse feedback. Reference-guided Policy Optimization (RePO) mitigates both by anchoring policy updates to dataset-provided references, but its effectiveness is tightly coupled to reference quality: weak or misaligned references impose a performance ceiling. To overcome this ceiling, we propose active reasoning, a paradigm in which the policy actively decides, on a per-instance basis, when to imitate a reference and when to reinforce its own discoveries, while continuously upgrading what it imitates. We instantiate this paradigm as Active Group Relative Policy Optimization (Active-GRPO), realized through two coupled mechanisms: active imitate-reinforce and active referencing. The former performs imitation learning when the reference still outperforms the policy's own candidates, and shifts to self-improvement via reinforcement learning once the policy has generated molecules that surpass the reference. The latter continuously upgrades the reference itself by replacing it with the best policy-generated candidate discovered so far, progressively raising the imitation target and ensuring that reference guidance remains informative--rather than restrictive--throughout training. Across TOMG-Bench MOLOPT, Active-GRPO improves average SR Sim from 0.0959 for GRPO and 0.1665 for RePO to 0.1773 under matched three-seed evaluation, with statistically significant gains on LogP, MR, and QED.
Convolutional Symmetric AutoEncoders: enhancing latent stability via differential geometry
Causi, G. Li, Tonicello, N., Magri, L., Rozza, G.
Autoencoders (AEs) have emerged as powerful tools for non-linear dimensionality reduction, often surpassing traditional linear methods such as Proper Orthogonal Decomposition (POD) in scenarios characterized by slowly decaying Kolmogorov $n$-widths. In the realm of Reduced-Order Modelling (ROM), these models are increasingly utilized to learn low-dimensional representations of solution manifolds associated with parametric Partial Differential Equations (PDEs). However, the high expressivity of AEs presents a challenge: although trained networks typically minimize reconstruction error, they often struggle to capture the essential properties necessary for building accurate and robust ROMs. Recent works by arXiv:2307.15288v2 and arXiv:2506.11641v1 have tackled this challenge in fully connected AEs by proposing representation-consistent architectures, which preserve some of the properties belonging to POD. This study builds upon that concept by extending representation consistency for convolutional layers. We introduce a novel class of symmetric Convolutional AutoEncoders (CAEs) designed to embody the primary properties of manifold parametrization mappings. When integrated into a ROM framework, this architecture demonstrates significantly improved predictive capabilities. Specifically, we compared the performance of the ROMs based on classical and symmetric CAEs on three one dimensional academic test cases, namely the Linear Advection, the Viscous Burger and the Kuramoto Sivashinsky equation. Numerical results demonstrate that our proposed symmetric approach consistently yields more accurate latent trajectories, lower reconstruction errors, and enhanced model robustness.
LLMs are stuck in a groupthink groove. This startup is trying to get them out.
Let's start with a game. Open up your chatbot of choice--Claude, ChatGPT, Gemini--and type "Give me a random number between 1 and 10." You're going to get 7. Almost always. Now type "Another" and you'll get 3 or 4. Type "Another" again and you'll get 8 or 9. That won't work every time--but if it did for you, you may wonder if I have superpowers.
Gemini Spark comes to Google's Gemini app for macOS
The Spark agentic AI assistant is exclusively available to Google AI Ultra subscribers in the US. Google has started rolling out its new agentic AI assistant, Gemini Spark, to Gemini's app for macOS . When the company launched Spark at its I/O developer conference in May, it explained that the assistant turns Gemini into an active partner that can actually do tasks for you. On Mac computers, for instance, you can ask it to (finally) sort the massive number of the PDFs in your Downloads into specific folders. You'll also be able to get it to do tasks on your Workspace apps using files in your computer, such as asking it to create a spreadsheet with invoices saved on your laptop.
Anthropic says US lifts export ban on its advanced AI tools
The US government has lifted export controls on Anthropic's most advanced artificial intelligence (AI) tools, just weeks after ordering it to restrict access to them over national security concerns, the company has said. Anthropic said in a social media post that it will begin restoring access to Claude Fable 5 and Mythos 5 on Wednesday after being notified that the US Department of Commerce has lifted export controls on the two models. They are the firm's most advanced AI tools, which were abruptly suspended on 12 June over concerns that they could be used by hackers to exploit weaknesses in computer systems. The BBC has contacted the Department of Commerce for comment. Mythos and Fable are two of Anthropic's AI models built on its Claude platform - a rival to the likes of OpenAI's ChatGPT and Google's Gemini. Fable 5 is a version of the AI model for the cosumer market, capable of deep reasoning and can perform complex tasks independently.
Learning a Sampling-Free Variational DNN Plugin from Tiny Training Sets to Refine OOD Segmentation With Uncertainty Estimation
Pal, Jimut B., Awate, Suyash P.
Deep neural networks (DNNs) frequently fail to generalize to out-of-distribution (OOD) medical images because of variations in scanners and acquisition protocols. Retraining DNN models to address these distribution shifts is often impractical due to the high cost of acquiring and annotating new medical datasets. To address this, we introduce VarDeepPCA, a novel lightweight variational DNN framework designed to restore/refine degraded segmentation maps by leveraging intrinsic geometric priors. Unlike existing approaches that require target-domain data or extensive pre-training, our VarDeepPCA explicitly learns a distribution of valid anatomical geometries using only small in-distribution (ID) datasets. Theoretically, our novel variational learning framework leverages a reinterpretation of the softmax mapping to implicitly perform exact distribution modeling, thereby enabling computationally efficient, sampling-free learning and inference. This also enables VarDeepPCA to provide uncertainty estimates associated with its restored segmentation maps. We empirically validate our framework across 4 distinct clinical applications, using 14 publicly available datasets, involving segmentation of the myocardium, neuroretinal rim, prostate, and fetal head. Comparisons against 15 existing methods demonstrate that VarDeepPCA consistently restores segmentation maps produced by the existing methods on OOD data to (i) significantly improve anatomical plausibility of geometries and clinical utility of the segmentations, and (ii) significantly reduce errors, without needing any more training data than that used by existing methods.
Training for the Model You Return: Improving Optimization for Iterate-Averaged Language Models
Many modern Language Model (LM) pipelines return an averaged model, such as an exponential moving average of the training iterates, rather than the final iterate itself. This raises a fundamental question: given that we will return an iterate average, how should we change training to improve the performance of this average? We study this question by formulating optimizer design for the iterate-average estimator as an optimal-control problem. In a continuous-time stochastic quadratic model, we solve for the control strategy that minimizes the error of the returned average subject to a penalty on the size of the intervention. A practical approximation to this controller yields PACE, a lightweight wrapper around AdamW that pulls the live weights toward their exponential moving average with a clipped, per-coordinate control strength. We prove that a stylized version of PACE converges at the standard stochastic convex optimization rate, up to a factor depending on the averaging rule, while in the quadratic setting it can strictly improve the limiting squared error of the iterate-average estimator and can do so by an arbitrarily large factor on some instances. Empirically, our results suggest that PACE improves over AdamW and EMA-evaluated AdamW in supervised fine-tuning of 1-2B parameter LMs and in GPT-2 pretraining on FineWeb for a wide range of learning rates, decay schedules, and other hyperparameters.