Understanding the geometry of neural network loss landscapes is a central question in deep learning, with implications for generalization and optimization. A striking phenomenon is $\textit{linear mode connectivity}$ (LMC), where independently trained models can be connected by low-or zero-barrier paths, despite appearing to lie in separate loss basins. However, this is often obscured by symmetries in parameter space--such as neuron permutations--which make functionally equivalent models appear dissimilar. Prior work has predominantly focused on neuron reordering through permutations, but such approaches are limited in scope and fail to capture the richer symmetries exhibited by modern architectures such as Transformers. In this work, we introduce a unified framework that captures four symmetry classes--permutations, semi-permutations, orthogonal transformations, and general invertible maps--broadening the set of valid reparameterizations and subsuming many previous approaches as special cases. Crucially, this generalization enables, for the first time, the discovery of low-and zero-barrier linear interpolation paths between independently trained Vision Transformers and GPT-2 models. Furthermore, our framework extends beyond pairwise alignment, to multi-model and width-heterogeneous settings, enabling alignment across architectures of different sizes. These results reveal deeper structure in the loss landscape and underscore the importance of symmetry-aware analysis for understanding model space geometry.

In this paper, we introduce a model-based deep-learning approach to solve finite-horizon continuous-time stochastic control problems with jumps. We iteratively train two neural networks: one to represent the optimal policy and the other to approximate the value function. Leveraging a continuous-time version of the dynamic programming principle, we derive two different training objectives based on the Hamilton--Jacobi--Bellman equation, ensuring that the networks capture the underlying stochastic dynamics. Empirical evaluations on different problems illustrate the accuracy and scalability of our approach, demonstrating its effectiveness in solving complex high-dimensional stochastic control tasks.

Modern Text-to-Image (T2I) models deploy multi-layered defenses to block Not-Safe-For-Work (NSFW) content generation. These defenses typically include sequential layers such as prompt filters, concept erasers and image filters. While existing adversarial attacks have demonstrated vulnerabilities in isolated defense layers, they prove largely ineffective against multi-layered defenses deployed in real-world T2I systems. In this paper, we demonstrate that exploiting overlapping vulnerabilities across these distinct defense layers enables adversaries to systematically bypass the entire safeguard of T2I systems. We propose Transstratal Adversarial Attack (TAA), a novel black-box framework to compromise T2I models with multi-layered protection. It generates transstratal adversarial prompts to evade all defense layers simultaneously. This is accomplished through transstratal adversarial candidate generation using LLMs to fulfill implicit and subjective adversarial requirements against different defense layers, combined with adversarial genetic optimization for efficient black-box search to maximize the bypass rates and generated image harmfulness. Evaluated across 14 T2I models (e.g., Stable Diffusion, DALL E, and Midjourney) and 17 safety modules, our attack achieves an average attack success rate of 85.6\%, surpassing state-of-the-art methods by 73.5\%. Our findings challenge the isolated design of safety mechanisms and establish the first benchmark for holistic robustness evaluation in multi-layered safeguarded T2I models.

Parameter-efficient training, based on low-rank optimization, has become a highly successful tool for fine-tuning large deep-learning models. However, these methods fail at low-rank pre-training tasks where maintaining the low-rank structure and the objective remains a challenging task. We propose the Quadratic Reweighted Rank Regularizer dubbed Q3R, which leads to a novel low-rank inducing training strategy inspired by the iteratively reweighted least squares (IRLS) framework. Q3R is based on a quadratic regularizer term which majorizes a smoothed log determinant serving as rank surrogate objective. Unlike other low-rank training techniques, Q3R is able to train weight matrices with prescribed, low target ranks of models that achieve comparable predictive performance as dense models, with small computational overhead, while remaining fully compatible with existing architectures. In experiments, we are able to truncate 60% of the parameters of a ViT-Tiny parameters with marginal loss in CIFAR-10 performance and up to 80% with only 4% accuracy drop. The efficacy of Q3R is confirmed on Transformers across both image and language tasks, including for low-rank fine-tuning.

In this paper, we propose integrating this inductive bias into ViTs, not through an architectural intervention but solely through initialization. The motivation here is to have a ViT that can enjoy strong CNN-like performance when data assets are small, but can still scale to ViT-like performance as the data expands. Our approach is motivated by our empirical results that random impulse filters can achieve commensurate performance to learned filters within a CNN. We improve upon current ViT initialization strategies, which typically rely on empirical heuristics such as using attention weights from pretrained models or focusing on the distribution of attention weights without enforcing structures. Empirical results demonstrate that our method significantly outperforms standard ViT initialization across numerous small and medium-scale benchmarks, including Food-101, CIFAR-10, CIFAR-100, STL-10, Flowers, and Pets, while maintaining comparative performance on large-scale datasets such as ImageNet-1K. Moreover, our initialization strategy can be easily integrated into various transformer-based architectures such as Swin Transformer and MLP-Mixer with consistent improvements in performance.

While deep learning methods have achieved strong performance in time series prediction, their black-box nature and inability to explicitly model underlying stochastic processes often limit their robustness handling non-stationary data, especially in the presence of abrupt changes. In this work, we introduce Neural MJD, a neural network based non-stationary Merton jump diffusion (MJD) model. Our model explicitly formulates forecasting as a stochastic differential equation (SDE) simulation problem, combining a time-inhomogeneous Itô diffusion to capture non-stationary stochastic dynamics with a time-inhomogeneous compound Poisson process to model abrupt jumps. To enable tractable learning, we introduce a likelihood truncation mechanism that caps the number of jumps within small time intervals and provide a theoretical error bound for this approximation. Additionally, we propose an Euler-Maruyama with restart solver, which achieves a provably lower error bound in estimating expected states and reduced variance compared to the standard solver. Experiments on both synthetic and real-world datasets demonstrate that Neural MJD consistently outperforms state-of-the-art deep learning and statistical learning methods.

Classical image filters, such as those for averaging or differencing, are carefully normalized to ensure consistency, interpretability, and to avoid artifacts like intensity shifts, halos, or ringing. In contrast, convolutional filters learned end-to-end in deep networks lack such constraints. Although they may resemble wavelets and blob/edge detectors, they are not normalized in the same or any way. Consequently, when images undergo atmospheric transfer, their responses become distorted, leading to incorrect outcomes. We address this limitation by proposing filter normalization, followed by learnable scaling and shifting, akin to batch normalization. This simple yet effective modification ensures that the filters are atmosphere-equivariant, enabling co-domain symmetry. By integrating classical filtering principles into deep learning (applicable to both convolutional neural networks and convolution-dependent vision transformers), our method achieves significant improvements on artificial and natural intensity variation benchmarks. Our ResNet34 could even outperform CLIP by a large margin. Our analysis reveals that unnormalized filters degrade performance, whereas filter normalization regularizes learning, promotes diversity, and improves robustness and generalization.

Deep learning techniques have driven significant progress in various analytical tasks within 3D genomics in computational biology. However, a holistic understanding of 3D genomics knowledge remains underexplored.

Predicting disease risk from DNA presents an unprecedented emerging challenge as biobanks approach population scale sizes ($N> 10^6$ individuals) with ultra-high-dimensional features ($L> 10^5$ genotypes). Current methods, often linear and reliant on summary statistics, fail to capture complex genetic interactions and discard valuable individual-level information. We introduce **PRSformer**, a scalable deep learning architecture designed for end-to-end, multitask disease prediction directly from million-scale individual genotypes. PRSformer employs neighborhood attention, achieving linear $O(L)$ complexity per layer, making Transformers tractable for genome-scale inputs. Crucially, PRSformer utilizes a stacking of these efficient attention layers, progressively increasing the effective receptive field to model local dependencies (e.g., within linkage disequilibrium blocks) before integrating information across wider genomic regions. This design, tailored for genomics, allows PRSformer to learn complex, potentially non-linear and long-range interactions directly from raw genotypes. We demonstrate PRSformer's effectiveness using a unique large private cohort ($N \approx 5$M) for predicting 18 autoimmune and inflammatory conditions using $L \approx 140$k variants. PRSformer significantly outperforms highly optimized linear models trained on the *same individual-level data* and state-of-the-art summary-statistic-based methods (LDPred2) derived from the *same cohort*, quantifying the benefits of non-linear modeling and multitask learning at scale. Furthermore, experiments reveal that the advantage of non-linearity emerges primarily at large sample sizes ($N > 1$M), and that a multi-ancestry trained model improves generalization, establishing PRSformer as a new framework for deep learning in population-scale genomics.

Recently, deep learning-based pan-sharpening algorithms have achieved notable advancements over traditional methods. However, deep learning-based methods incur substantial computational overhead during inference, especially with large images. This excessive computational demand limits the applicability of these methods in real-world scenarios, particularly in the absence of dedicated computing devices such as GPUs and TPUs. To address these challenges, we propose Pan-LUT, a novel learnable look-up table (LUT) framework for pan-sharpening that strikes a balance between performance and computational efficiency for large remote sensing images. Our method makes it possible to process 15K$\times$15K remote sensing images on a 24GB GPU. To finely control the spectral transformation, we devise the PAN-guided look-up table (PGLUT) for channel-wise spectral mapping. To effectively capture fine-grained spatial details, we introduce the spatial details look-up table (SDLUT).