Multi-omics data integration is crucial for understanding complex diseases, yet limited sample sizes, noise, and heterogeneity often reduce predictive power. To address these challenges, we introduce Omics-GAN, a Generative Adversarial Network (GAN)-based framework designed to generate high-quality synthetic multi-omics profiles while preserving biological relationships. We evaluated Omics-GAN on three omics types (mRNA, miRNA, and DNA methylation) using the ROSMAP cohort for Alzheimer's disease (AD) and TCGA datasets for colon and liver cancer. A support vector machine (SVM) classifier with repeated 5-fold cross-validation demonstrated that synthetic datasets consistently improved prediction accuracy compared to original omics profiles. The AUC of SVM for mRNA improved from 0.72 to 0.74 in AD, and from 0.68 to 0.72 in liver cancer. Synthetic miRNA enhanced classification in colon cancer from 0.59 to 0.69, while synthetic methylation data improved performance in liver cancer from 0.64 to 0.71. Boxplot analyses confirmed that synthetic data preserved statistical distributions while reducing noise and outliers. Feature selection identified significant genes overlapping with original datasets and revealed additional candidates validated by GO and KEGG enrichment analyses. Finally, molecular docking highlighted potential drug repurposing candidates, including Nilotinib for AD, Atovaquone for liver cancer, and Tecovirimat for colon cancer. Omics-GAN enhances disease prediction, preserves biological fidelity, and accelerates biomarker and drug discovery, offering a scalable strategy for precision medicine applications.

Recent advances such as self-consistency and test-time reinforcement learning (TTRL) improve the reliability of large language models (LLMs) without additional supervision, yet their underlying mechanisms and statistical guarantees remain poorly understood. We present a unified framework for certifiable inference in LLMs, showing that majority voting provides a statistical certificate of self-consistency: under mild assumptions, the aggregated answer coincides with the mode of the model's terminal distribution with high probability. We derive finite-sample and anytime-valid concentration bounds that quantify this confidence, and introduce the Martingale Majority Certificate (MMC), a sequential stopping rule that adaptively determines when sufficient samples have been drawn. We further prove that label-free post-training methods such as TTRL implicitly sharpen the answer distribution by exponentially tilting it toward its mode, thereby reducing the number of samples required for certification. Building on this insight, we propose new post-training objectives that explicitly optimise this trade-off between sharpness and bias. Together, these results explain and connect two central test-time scaling strategies, self-consistency and TTRL, within a single statistical framework for label-free, certifiable reliability in reasoning LLMs.

Electrocardiogram (ECG), as a crucial find-grained cardiac feature, has been successfully recovered from radar signals in the literature, but the performance heavily relies on the high-quality radar signal and numerous radar-ECG pairs for training, restricting the applications in new scenarios due to data scarcity. Therefore, this work will focus on radar-based ECG recovery in new scenarios with limited data and propose a cardio-focusing and -tracking (CFT) algorithm to precisely track the cardiac location to ensure an efficient acquisition of high-quality radar signals. Furthermore, a transfer learning model (RFcardi) is proposed to extract cardio-related information from the radar signal without ECG ground truth based on the intrinsic sparsity of cardiac features, and only a few synchronous radar-ECG pairs are required to fine-tune the pre-trained model for the ECG recovery. The experimental results reveal that the proposed CFT can dynamically identify the cardiac location, and the RFcardi model can effectively generate faithful ECG recoveries after using a small number of radar-ECG pairs for training. The code and dataset are available after the publication.

Masked diffusion language models (MDLMs) are trained to in-fill positions in randomly masked sequences, in contrast to next-token prediction models. Discussions around MDLMs focus on two benefits: (1) any-order decoding and 2) multi-token decoding. However, we observe that for math and coding tasks, any-order algorithms often underperform or behave similarly to left-to-right sampling, and standard multi-token decoding significantly degrades performance. At inference time, MDLMs compute the conditional distribution of all masked positions. A natural question is: How can we justify this additional compute when left-to-right one-token-at-a-time decoding is on par with any-order decoding algorithms? First, we propose reasoning-as-infilling. By using MDLMs to infill a reasoning template, we can structure outputs and distinguish between reasoning and answer tokens. In turn, this enables measuring answer uncertainty during reasoning, and early exits when the model converges on an answer. Next, given an answer, reasoning-as-infilling enables sampling from the MDLM posterior over reasoning traces conditioned on the answer, providing a new source of high-quality data for post-training. On GSM8k, we observe that fine-tuning LLaDA-8B Base on its posterior reasoning traces provides a performance boost on par with fine-tuning on human-written reasoning traces. Additionally, given an answer, reasoning-as-infilling provides a method for scoring the correctness of the reasoning process at intermediate steps. Second, we propose multi-token entropy decoding (MED), a simple adaptive sampler that minimizes the error incurred by decoding positions in parallel based on the conditional entropies of those positions. MED preserves performance across benchmarks and leads to 2.7x fewer steps. Our work demonstrates that the training and compute used by MDLMs unlock many new inference and post-training methods.

Recent techniques such as retrieval-augmented generation or chain-of-thought reasoning have led to longer contexts and increased inference costs. Context compression techniques can reduce these costs, but the most effective approaches require fine-tuning the target model or even modifying its architecture. This can degrade its general abilities when not used for this specific purpose. Here we explore an alternative approach: an encoder that compresses the context into continuous representations which replace token embeddings in decoder LLMs. First, we perform a systematic study of training strategies and architecture choices for the encoder. Our findings led to the design of an Adaptable text Representations Compressor, named ARC-Encoder, which outputs $x$-times fewer continuous representations (typically $x\!\in\!\{4,8\}$) than text tokens. We evaluate ARC-Encoder across a variety of LLM usage scenarios, ranging from in-context learning to context window extension, on both instruct and base decoders. Results show that ARC-Encoder achieves state-of-the-art performance on several benchmarks while improving computational efficiency at inference. Finally, we demonstrate that our models can be adapted to multiple decoders simultaneously, allowing a single encoder to generalize across different decoder LLMs. This makes ARC-Encoder a flexible and efficient solution for portable encoders that work seamlessly with multiple LLMs. We release a training code at https://github.com/kyutai-labs/ARC-Encoder , fine-tuning dataset and pretrained models are available at https://huggingface.co/collections/kyutai/arc-encoders-68ee18787301407d60a57047 .

The advancement of Multimodal Large Language Models (MLLMs) has bridged the gap between vision and language tasks, enabling the implementation of Explainable DeepFake Analysis (XDFA). However, current methods suffer from a lack of fine-grained awareness: the description of artifacts in data annotation is unreliable and coarse-grained, and the models fail to support the output of connections between textual forgery explanations and the visual evidence of artifacts, as well as the input of queries for arbitrary facial regions. As a result, their responses are not sufficiently grounded in Face Visual Context (Facext). To address this limitation, we propose the Fake-in-Facext (FiFa) framework, with contributions focusing on data annotation and model construction. We first define a Facial Image Concept Tree (FICT) to divide facial images into fine-grained regional concepts, thereby obtaining a more reliable data annotation pipeline, FiFa-Annotator, for forgery explanation. Based on this dedicated data annotation, we introduce a novel Artifact-Grounding Explanation (AGE) task, which generates textual forgery explanations interleaved with segmentation masks of manipulated artifacts. We propose a unified multi-task learning architecture, FiFa-MLLM, to simultaneously support abundant multimodal inputs and outputs for fine-grained Explainable DeepFake Analysis. With multiple auxiliary supervision tasks, FiFa-MLLM can outperform strong baselines on the AGE task and achieve SOTA performance on existing XDFA datasets. The code and data will be made open-source at https://github.com/lxq1000/Fake-in-Facext.

Thanks to the remarkable human-like capabilities of machine learning (ML) models in perceptual and cognitive tasks, frameworks integrating ML within rational agent architectures are gaining traction. Yet, the landscape remains fragmented and incoherent, often focusing on embedding ML into generic agent containers while overlooking the expressive power of rational architectures--such as Belief-Desire-Intention (BDI) agents. This paper presents a fine-grained systematisation of existing approaches, using the BDI paradigm as a reference. Our analysis illustrates the fast-evolving literature on rational agents enhanced by ML, and identifies key research opportunities and open challenges for designing effective rational ML agents.

Brain-computer interfaces (BCIs) promise to enable vital functions, such as speech and prosthetic control, for individuals with neuromotor impairments. Central to their success are neural decoders, models that map neural activity to intended behavior. Current learning-based decoding approaches fall into two classes: simple, causal models that lack generalization, or complex, non-causal models that generalize and scale offline but struggle in real-time settings. Both face a common challenge, their reliance on power-hungry artificial neural network backbones, which makes integration into real-world, resource-limited systems difficult. Spiking neural networks (SNNs) offer a promising alternative. Because they operate causally these models are suitable for real-time use, and their low energy demands make them ideal for battery-constrained environments. To this end, we introduce Spikachu: a scalable, causal, and energy-efficient neural decoding framework based on SNNs. Our approach processes binned spikes directly by projecting them into a shared latent space, where spiking modules, adapted to the timing of the input, extract relevant features; these latent representations are then integrated and decoded to generate behavioral predictions. We evaluate our approach on 113 recording sessions from 6 non-human primates, totaling 43 hours of recordings. Our method outperforms causal baselines when trained on single sessions using between 2.26 and 418.81 times less energy. Furthermore, we demonstrate that scaling up training to multiple sessions and subjects improves performance and enables few-shot transfer to unseen sessions, subjects, and tasks. Overall, Spikachu introduces a scalable, online-compatible neural decoding framework based on SNNs, whose performance is competitive relative to state-of-the-art models while consuming orders of magnitude less energy.

Deep learning models have achieved great success on various vision challenges, but a well-trained model would face drastic performance degradation when applied to unseen data. Since the model is sensitive to domain shift, unsupervised domain adaptation attempts to reduce the domain gap and avoid costly annotation of unseen domains. This paper proposes a novel framework for cross-modality segmentation via similarity-based prototypes. In specific, we learn class-wise prototypes within an embedding space, then introduce a similarity constraint to make these prototypes representative for each semantic class while separable from different classes. Moreover, we use dictionaries to store prototypes extracted from different images, which prevents the class-missing problem and enables the contrastive learning of prototypes, and further improves performance. Extensive experiments show that our method achieves better results than other state-of-the-art methods.

Large language models (LLMs) show promise for clinical use. They are often evaluated using datasets such as MedQA. However, Many medical datasets, such as MedQA, rely on simplified Question-Answering (Q\A) that underrepresents real-world clinical decision-making. Based on this, we propose a unifying paradigm that characterizes clinical decision-making tasks along two dimensions: Clinical Backgrounds and Clinical Questions. As the background and questions approach the real clinical environment, the difficulty increases. We summarize the settings of existing datasets and benchmarks along two dimensions. Then we review methods to address clinical decision-making, including training-time and test-time techniques, and summarize when they help. Next, we extend evaluation beyond accuracy to include efficiency, explainability. Finally, we highlight open challenges. Our paradigm clarifies assumptions, standardizes comparisons, and guides the development of clinically meaningful LLMs.