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 Deep Learning


Left Ventricle Segmentation and Volume Estimation on Cardiac MRI using Deep Learning

arXiv.org Machine Learning

In the United States, heart disease is the leading cause of death for males and females, accounting for 610,000 deaths each year [1]. Physicians use Magnetic Resonance Imaging (MRI) scans to take images of the heart in order to non-invasively estimate its structural and functional parameters for cardiovascular diagnosis and disease management. The end-systolic volume (ESV) and end-diastolic volume (EDV) of the left ventricle (LV), and the ejection fraction (EF) are indicators of heart disease. These measures can be derived from the segmented contours of the LV; thus, consistent and accurate segmentation of the LV from MRI images are critical to the accuracy of the ESV, EDV, and EF, and to non-invasive cardiac disease detection. In this work, various image preprocessing techniques, model configurations using the U-Net deep learning architecture, postprocessing methods, and approaches for volume estimation are investigated. An end-to-end analytics pipeline with multiple stages is provided for automated LV segmentation and volume estimation. First, image data are reformatted and processed from DICOM and NIfTI formats to raw images in array format. Secondly, raw images are processed with multiple image preprocessing methods and cropped to include only the Region of Interest (ROI). Thirdly, preprocessed images are segmented using U-Net models. Lastly, post processing of segmented images to remove extra contours along with intelligent slice and frame selection are applied, followed by calculation of the ESV, EDV, and EF. This analytics pipeline is implemented and runs on a distributed computing environment with a GPU cluster at the San Diego Supercomputer Center at UCSD.


Connectionist Recommendation in the Wild

arXiv.org Artificial Intelligence

In this paper, we demonstrate novel ways in which the synthesis of these data can illuminate the terrain of users' environment and support them in their decision making and wayfinding. A novel application of Recurrent Neural Networks and skip-gram models, approaches popularized by their application to modeling language, are brought to bear on student university enrollment sequences to create vector representations of courses and map out traversals across them. We present demonstrations of how scrutability from these neural networks can be gained and how the combination of these techniques can be seen as an evolution of content tagging and a means for a recommender to balance user preferences inferred from data with those explicitly specified. From validation of the models to the development of a UI, we discuss additional requisite functionality informed by the results of a field study leading to the ultimate deployment of the system at a university.


Extending Neural Generative Conversational Model using External Knowledge Sources

arXiv.org Artificial Intelligence

The use of connectionist approaches in conversational agents has been progressing rapidly due to the availability of large corpora. However current generative dialogue models often lack coherence and are content poor. This work proposes an architecture to incorporate unstructured knowledge sources to enhance the next utterance prediction in chit-chat type of generative dialogue models. We focus on Sequence-to-Sequence (Seq2Seq) conversational agents trained with the Reddit News dataset, and consider incorporating external knowledge from Wikipedia summaries as well as from the NELL knowledge base. Our experiments show faster training time and improved perplexity when leveraging external knowledge.


Adversarial Examples: Opportunities and Challenges

arXiv.org Machine Learning

Abstract--With the advent of the era of artificial intelligence (AI), deep neural networks (DNNs) have shown huge superiority over human in image recognition, speech processing, autonomous vehicles and medical diagnosis. However, recent studies indicate that DNNs are vulnerable to adversarial examples (AEs) which are designed by attackers to fool deep learning models. Different from real examples, AEs can hardly be distinguished from human eyes, but mislead the model to predict incorrect outputs and therefore threaten security critical deep-learning applications. In recent years, the generation and defense of AEs have become a research hotspot in the field of AI security. This article reviews the latest research progress of AEs. First, we introduce the concept, cause, characteristic and evaluation metrics of AEs, then give a survey on the state-of-the-art AE generation methods with the discussion of advantages and disadvantages. After that we review the existing defenses and discuss their limitations. Finally, the future research opportunities and challenges of AEs are prospected. In the era of AI, DNNs have shown great advantages in autonomous vehicles, robotics, network security, image/speech recognition and natural language processing (NLP). For example, in 2017, an intelligent robot with the superior face recognition ability, named XiaoDu developed by Baidu, defeated a representative from the team of humans strongest brain with the score of 3:2 [1]. On October 19th, 2017, the DeepMind team of Google released the AlphaGo Zero, which shocked the world. Compared with the previous AlphaGo, AlphaGo Zero relies on reinforcement learning without any priori knowledge to grow chess skills and finally beats every human competitor [2]. For AI research, the United States received huge support from the government, such as the Federal Research Fund. In October 2016, the United States issued the project of Preparing for the Future of Artificial Intelligence and the National Artificial Intelligence Research and Development Strategic Plan, which raised AI to the national strategic level and formulated ambitious blueprints [3], [4]. Manuscript received xxx; revised xx; accepted xxx. This work is supported by the National Natural Science Foundation of China (Grant NOs. J. Zhang and X. Jiang are with the College of Computer Science and Electronic Engineering, Hunan University, Changsha 410082, China (email: zhangjiliang@hnu.edu.cn). In the same year, AI was written into the nineteenth National Congress report, which pushed the development of AI industries to a new height and filled the gap in the top-level strategy of AI development [5].


Medical Image Synthesis for Data Augmentation and Anonymization using Generative Adversarial Networks

arXiv.org Machine Learning

Data diversity is critical to success when training deep learning models. Medical imaging data sets are often imbalanced as pathologic findings are generally rare, which introduces significant challenges when training deep learning models. In this work, we propose a method to generate synthetic abnormal MRI images with brain tumors by training a generative adversarial network using two publicly available data sets of brain MRI. We demonstrate two unique benefits that the synthetic images provide. First, we illustrate improved performance on tumor segmentation by leveraging the synthetic images as a form of data augmentation. Second, we demonstrate the value of generative models as an anonymization tool, achieving comparable tumor segmentation results when trained on the synthetic data versus when trained on real subject data. Together, these results offer a potential solution to two of the largest challenges facing machine learning in medical imaging, namely the small incidence of pathological findings, and the restrictions around sharing of patient data.


Neural Network Topologies for Sparse Training

arXiv.org Machine Learning

Abstract--The sizes of deep neural networks (DNNs) are rapidly outgrowing the capacity of hardware to store and train them. Research over the past few decades has explored the prospect of sparsifying DNNs before, during, and after training by pruning edges from the underlying topology. The resulting neural network is known as a sparse neural network. More recent work has demonstrated the remarkable result that certain sparse DNNs can train to the same precision as dense DNNs at lower runtime and storage cost. An intriguing class of these sparse DNNs is the X-Nets, which are initialized and trained upon a sparse topology with neither reference to a parent dense DNN nor subsequent pruning. We present an algorithm that deterministically generates sparse DNN topologies that, as a whole, are much more diverse than X-Net topologies, while preserving X-Nets' desired characteristics.


Query-Efficient Black-Box Attack by Active Learning

arXiv.org Machine Learning

Deep neural network (DNN) as a popular machine learning model is found to be vulnerable to adversarial attack. This attack constructs adversarial examples by adding small perturbations to the raw input, while appearing unmodified to human eyes but will be misclassified by a well-trained classifier. In this paper, we focus on the black-box attack setting where attackers have almost no access to the underlying models. To conduct black-box attack, a popular approach aims to train a substitute model based on the information queried from the target DNN. The substitute model can then be attacked using existing white-box attack approaches, and the generated adversarial examples will be used to attack the target DNN. Despite its encouraging results, this approach suffers from poor query efficiency, i.e., attackers usually needs to query a huge amount of times to collect enough information for training an accurate substitute model. To this end, we first utilize state-of-the-art white-box attack methods to generate samples for querying, and then introduce an active learning strategy to significantly reduce the number of queries needed. Besides, we also propose a diversity criterion to avoid the sampling bias. Our extensive experimental results on MNIST and CIFAR-10 show that the proposed method can reduce more than $90\%$ of queries while preserve attacking success rates and obtain an accurate substitute model which is more than $85\%$ similar with the target oracle.


DeepFall -- Non-invasive Fall Detection with Deep Spatio-Temporal Convolutional Autoencoders

arXiv.org Machine Learning

Human falls rarely occur; however, detecting falls is very important from the health and safety perspective. Due to the rarity of falls, it is difficult to employ supervised classification techniques to detect them. Moreover, in these highly skewed situations it is also difficult to extract domain specific features to identify falls. In this paper, we present a novel framework, \textit{DeepFall}, which formulates the fall detection problem as an anomaly detection problem. The \textit{DeepFall} framework presents the novel use of deep spatio-temporal convolutional autoencoders to learn spatial and temporal features from normal activities using non-invasive sensing modalities. We also present a new anomaly scoring method that combines the reconstruction score of frames across a video sequences to detect unseen falls. We tested the \textit{DeepFall} framework on three publicly available datasets collected through non-invasive sensing modalities, thermal camera and depth cameras and show superior results in comparison to traditional autoencoder and convolutional autoencoder methods to identify unseen falls.


Adversarial Attacks on Node Embeddings

arXiv.org Machine Learning

The goal of network representation learning is to learn low-dimensional node embeddings that capture the graph structure and are useful for solving downstream tasks. However, despite the proliferation of such methods there is currently no study of their robustness to adversarial attacks. We provide the first adversarial vulnerability analysis on the widely used family of methods based on random walks. We derive efficient adversarial perturbations that poison the network structure and have a negative effect on both the quality of the embeddings and the downstream tasks. We further show that our attacks are transferable -- they generalize to many models -- and are successful even when the attacker has restricted actions.


Defensive Dropout for Hardening Deep Neural Networks under Adversarial Attacks

arXiv.org Machine Learning

Deep neural networks (DNNs) are known vulnerable to adversarial attacks. That is, adversarial examples, obtained by adding delicately crafted distortions onto original legal inputs, can mislead a DNN to classify them as any target labels. This work provides a solution to hardening DNNs under adversarial attacks through defensive dropout. Besides using dropout during training for the best test accuracy, we propose to use dropout also at test time to achieve strong defense effects. We consider the problem of building robust DNNs as an attacker-defender two-player game, where the attacker and the defender know each others' strategies and try to optimize their own strategies towards an equilibrium. Based on the observations of the effect of test dropout rate on test accuracy and attack success rate, we propose a defensive dropout algorithm to determine an optimal test dropout rate given the neural network model and the attacker's strategy for generating adversarial examples. We also investigate the mechanism behind the outstanding defense effects achieved by the proposed defensive dropout. Comparing with stochastic activation pruning (SAP), another defense method through introducing randomness into the DNN model, we find that our defensive dropout achieves much larger variances of the gradients, which is the key for the improved defense effects (much lower attack success rate). For example, our defensive dropout can reduce the attack success rate from 100% to 13.89% under the currently strongest attack i.e., C&W attack on MNIST dataset.