Deep Learning
Peer-to-peer Federated Learning on Graphs
Lalitha, Anusha, Kilinc, Osman Cihan, Javidi, Tara, Koushanfar, Farinaz
We consider the problem of training a machine learning model over a network of nodes in a fully decentralized framework. The nodes take a Bayesian-like approach via the introduction of a belief over the model parameter space. We propose a distributed learning algorithm in which nodes update their belief by aggregate information from their one-hop neighbors to learn a model that best fits the observations over the entire network. In addition, we also obtain sufficient conditions to ensure that the probability of error is small for every node in the network. We discuss approximations required for applying this algorithm to train Deep Neural Networks (DNNs). Experiments on training linear regression model and on training a DNN show that the proposed learning rule algorithm provides a significant improvement in the accuracy compared to the case where nodes learn without cooperation.
Spatial-Temporal Graph Convolutional Networks for Sign Language Recognition
de Amorim, Cleison Correia, Macêdo, David, Zanchettin, Cleber
Abstract--The recognition of sign language is a challenging task with an important role in society to facilitate the communication ofdeaf persons. We propose a new approach of Spatial-Temporal Graph Convolutional Network to sign language recognition based on the human skeletal movements. The method uses graphs to capture the signs dynamics in two dimensions, spatial and temporal, considering the complex aspects of the language. Additionally, we present a new dataset of human skeletons for sign language based on ASLLVD to contribute to future related studies. I. INTRODUCTION Sign language is a visual communication skill that enables individuals with different types of hearing impairment to communicate in society. It is the language used by most deaf people in their daily lives and, moreover, it is the symbol of identification between the members of that community and the main force that unites them. The sign language has a very close relationship with the culture of the country or even regions, and for this reason, each nation has its language [1]. According to the World Health Organization, the number of deaf people is about 466 million, and the organization estimates that by 2050 this number exceeds 900 million, which is equivalent to a forecast of 1 in 10 individuals around the world [2].
Distinguishing between Normal and Cancer Cells Using Autoencoder Node Saliency
Fan, Ya Ju, Allen, Jonathan E., Jacobs, Sam Ade, Van Essen, Brian C.
Gene expression profiles have been widely used to characterize patterns of cellular responses to diseases. As data becomes available, scalable learning toolkits become essential to processing large datasets using deep learning models to model complex biological processes. We present an autoencoder to capture nonlinear relationships recovered from gene expression profiles. The autoencoder is a nonlinear dimension reduction technique using an artificial neural network, which learns hidden representations of unlabeled data. We train the autoencoder on a large collection of tumor samples from the National Cancer Institute Genomic Data Commons, and obtain a generalized and unsupervised latent representation. We leverage a HPC-focused deep learning toolkit, Livermore Big Artificial Neural Network (LBANN) to efficiently parallelize the training algorithm, reducing computation times from several hours to a few minutes. With the trained autoencoder, we generate latent representations of a small dataset, containing pairs of normal and cancer cells of various tumor types. A novel measure called autoencoder node saliency (ANS) is introduced to identify the hidden nodes that best differentiate various pairs of cells. We compare our findings of the best classifying nodes with principal component analysis and the visualization of t-distributed stochastic neighbor embedding. We demonstrate that the autoencoder effectively extracts distinct gene features for multiple learning tasks in the dataset.
HyperGAN: A Generative Model for Diverse, Performant Neural Networks
We introduce HyperGAN, a generative network that learns to generate all the weights within a deep neural network. HyperGAN employs a novel mixer to transform independent Gaussian noise into a latent space where dimensions are correlated, which is then transformed to generate weights in each layer of a deep neural network. We utilize an architecture that bears resemblance to generative adversarial networks, but we evaluate the likelihood of samples with a classification loss. This is equivalent to minimizing the KL-divergence between the generated network parameter distribution and an unknown true parameter distribution. We apply HyperGAN to classification, showing that HyperGAN can learn to generate parameters which solve the MNIST and CIFAR-10 datasets with competitive performance to fully supervised learning, while learning a rich distribution of effective parameters. We also show that HyperGAN can also provide better uncertainty than standard ensembles. This is evaluated by the ability of HyperGAN generated ensembles to detect out of distribution data as well as adversarial examples. We see that in addition to being highly accurate on inlier data, HyperGAN can provide reasonable uncertainty estimates.
GeNet: Deep Representations for Metagenomics
Rojas-Carulla, Mateo, Tolstikhin, Ilya, Luque, Guillermo, Youngblut, Nicholas, Ley, Ruth, Schölkopf, Bernhard
We introduce GeNet, a method for shotgun metagenomic classification from raw DNA sequences that exploits the known hierarchical structure between labels for training. We provide a comparison with state-of-the-art methods Kraken and Centrifuge on datasets obtained from several sequencing technologies, in which dataset shift occurs. We show that GeNet obtains competitive precision and good recall, with orders of magnitude less memory requirements. Moreover, we show that a linear model trained on top of representations learned by GeNet achieves recall comparable to state-of-the-art methods on the aforementioned datasets, and achieves over 90% accuracy in a challenging pathogen detection problem. This provides evidence of the usefulness of the representations learned by GeNet for downstream biological tasks.
End-to-End Multi-Task Denoising for joint SDR and PESQ Optimization
Kim, Jaeyoung, El-Kharmy, Mostafa, Lee, Jungwon
Supervised learning based on a deep neural network recently has achieved substantial improvement on speech enhancement. Denoising networks learn mapping from noisy speech to clean one directly, or to a spectrum mask which is the ratio between clean and noisy spectra. In either case, the network is optimized by minimizing mean square error (MSE) between ground-truth labels and time-domain or spectrum output. However, existing schemes have either of two critical issues: spectrum and metric mismatches. The spectrum mismatch is a well known issue that any spectrum modification after short-time Fourier transform (STFT), in general, cannot be fully recovered after inverse short-time Fourier transform (ISTFT). The metric mismatch is that a conventional MSE metric is sub-optimal to maximize our target metrics, signal-to-distortion ratio (SDR) and perceptual evaluation of speech quality (PESQ). This paper presents a new end-to-end denoising framework with the goal of joint SDR and PESQ optimization. First, the network optimization is performed on the time-domain signals after ISTFT to avoid spectrum mismatch. Second, two loss functions which have improved correlations with SDR and PESQ metrics are proposed to minimize metric mismatch. The experimental result showed that the proposed denoising scheme significantly improved both SDR and PESQ performance over the existing methods.
Avoiding Latent Variable Collapse With Generative Skip Models
Dieng, Adji B., Kim, Yoon, Rush, Alexander M., Blei, David M.
Variational autoencoders learn distributions of high-dimensional data. They model data with a deep latent-variable model and then fit the model by maximizing a lower bound of the log marginal likelihood. VAEs can capture complex distributions, but they can also suffer from an issue known as "latent variable collapse," especially if the likelihood model is powerful. Specifically, the lower bound involves an approximate posterior of the latent variables; this posterior "collapses" when it is set equal to the prior, i.e., when the approximate posterior is independent of the data. While VAEs learn good generative models, latent variable collapse prevents them from learning useful representations. In this paper, we propose a simple new way to avoid latent variable collapse by including skip connections in our generative model; these connections enforce strong links between the latent variables and the likelihood function. We study generative skip models both theoretically and empirically. Theoretically, we prove that skip models increase the mutual information between the observations and the inferred latent variables. Empirically, we study images (MNIST and Omniglot) and text (Yahoo). Compared to existing VAE architectures, we show that generative skip models maintain similar predictive performance but lead to less collapse and provide more meaningful representations of the data.
NAOMI: Non-Autoregressive Multiresolution Sequence Imputation
Liu, Yukai, Yu, Rose, Zheng, Stephan, Zhan, Eric, Yue, Yisong
Missing value imputation is a fundamental problem in modeling spatiotemporal sequences, from motion tracking to the dynamics of physical systems. In this paper, we take a non-autoregressive approach and propose a novel deep generative model: Non-AutOregressive Multiresolution Imputation (NAOMI) for imputing long-range spatiotemporal sequences given arbitrary missing patterns. In particular, NAOMI exploits the multiresolution structure of spatiotemporal data to interpolate recursively from coarse to fine-grained resolutions. We further enhance our model with adversarial training using an imitation learning objective. When trained on billiards and basketball trajectories, NAOMI demonstrates significant improvement in imputation accuracy (reducing average prediction error by 60% compared to autoregressive counterparts) and generalization capability for long range trajectories in systems of both deterministic and stochastic dynamics.
On Correlation of Features Extracted by Deep Neural Networks
Ayinde, Babajide O., Inanc, Tamer, Zurada, Jacek M.
Redundancy in deep neural network (DNN) models has always been one of their most intriguing and important properties. DNNs have been shown to overparameterize, or extract a lot of redundant features. In this work, we explore the impact of size (both width and depth), activation function, and weight initialization on the susceptibility of deep neural network models to extract redundant features. To estimate the number of redundant features in each layer, all the features of a given layer are hierarchically clustered according to their relative cosine distances in feature space and a set threshold. It is shown that both network size and activation function are the two most important components that foster the tendency of DNNs to extract redundant features. The concept is illustrated using deep multilayer perceptron and convolutional neural networks on MNIST digits recognition and CIFAR-10 dataset, respectively.
A Simple Explanation for the Existence of Adversarial Examples with Small Hamming Distance
Shamir, Adi, Safran, Itay, Ronen, Eyal, Dunkelman, Orr
The existence of adversarial examples in which an imperceptible change in the input can fool well trained neural networks was experimentally discovered by Szegedy et al in 2013, who called them "Intriguing properties of neural networks". Since then, this topic had become one of the hottest research areas within machine learning, but the ease with which we can switch between any two decisions in targeted attacks is still far from being understood, and in particular it is not clear which parameters determine the number of input coordinates we have to change in order to mislead the network. In this paper we develop a simple mathematical framework which enables us to think about this baffling phenomenon from a fresh perspective, turning it into a natural consequence of the geometry of $\mathbb{R}^n$ with the $L_0$ (Hamming) metric, which can be quantitatively analyzed. In particular, we explain why we should expect to find targeted adversarial examples with Hamming distance of roughly $m$ in arbitrarily deep neural networks which are designed to distinguish between $m$ input classes.