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 Deep Learning


On Extending Direct Preference Optimization to Accommodate Ties

Neural Information Processing Systems

We derive and investigate two DPO variants that explicitly model the possibility of declaring a tie in pair-wise comparisons. We replace the Bradley-Terry model in DPO with two well-known modeling extensions, by Rao and Kupper and by Davidson, that assign probability to ties as alternatives to clear preferences. Our experiments in neural machine translation and summarization show that explicitly labeled ties can be added to the datasets for these DPO variants without the degradation in task performance that is observed when the same tied pairs are presented to DPO. We find empirically that the inclusion of ties leads to stronger regularization with respect to the reference policy as measured by KL divergence, and we see this even for DPO in its original form. We provide a theoretical explanation for this regularization effect using ideal DPO policy theory.


Towards Multi Video Understanding Evaluation for LLMs

Neural Information Processing Systems

The advent of Multimodal Large Language Models (MLLMs) has expanded AI capabilities to visual modalities, yet existing evaluation benchmarks remain limited to single-video understanding, overlooking the critical need for multi-video understanding in real-world scenarios (e.g., sports analytics and autonomous driving). To address this significant gap, we introduce MVU-Eval, the first comprehensive benchmark for evaluating Multi-Video Understanding for MLLMs.


. =Matrix Weight Vectors Values Vectors Left Singular Singular Right Singular

Neural Information Processing Systems

Adapting large-scale foundation models in multi-task scenarios often suffers from task conflict and oblivion. To mitigate such issues, we propose a novel "model MoEization" strategy that leads to a conflict-and oblivion-resistant multi-task adaptation method. Given a weight matrix of a pre-trained model, our method applies SVD to it and introduces a learnable router to adjust its singular values based on tasks and samples. Accordingly, the weight matrix becomes a Mixture of Orthogonal Rank-one Experts (MoORE), in which each expert corresponds to the outer product of a left singular vector and the corresponding right one. We can improve the model capacity by imposing a learnable orthogonal transform on the right singular vectors. Unlike low-rank adaptation (LoRA) and its MoE-driven variants, MoORE guarantees the experts' orthogonality and maintains the column space of the original weight matrix. These two properties make the adapted model resistant to the conflicts among the new tasks and the oblivion of its original tasks, respectively. Experiments on various datasets demonstrate that MoORE outperforms existing multi-task adaptation methods consistently, showing its superiority in terms of conflict-and oblivion-resistance. The code is available at https://github.


Scaling and context steer LLMs along the same computational path as the human brain

Neural Information Processing Systems

Recent studies suggest that the representations learned by large language models (LLMs) are partially aligned to those of the human brain. However, whether and why this alignment score arises from a similar sequence of computations remains elusive. In this study, we explore this question by examining temporally-resolved brain signals of participants listening to 10 hours of an audiobook. We study these neural dynamics jointly with a benchmark encompassing 17 LLMs varying in size and architecture type. Our analyses confirm that LLMs and the brain generate representations in a similar order: specifically, activations in the initial layers of LLMs tend to best align with early brain responses, while the deeper layers of LLMs tend to best align with later brain responses. This brain-LLM alignment is consistent across transformers and recurrent architectures. However, its emergence depends on both model size and context length.


4d5f03fdb238255019826032ae7cc8e2-Paper-Datasets_and_Benchmarks_Track.pdf

Neural Information Processing Systems

Audio-visual understanding is a rapidly evolving field that seeks to integrate and interpret information from both auditory and visual modalities. Despite recent advances in multi-modal learning, existing benchmarks often suffer from strong visual bias - when answers can be inferred from visual data alone - and provide only aggregate scores that conflate multiple sources of error. This makes it difficult to determine whether models struggle with visual understanding, audio interpretation, or audio-visual alignment. In this work, we introduce DAVE (Diagnostic Audio Visual Evaluation), a novel benchmark dataset designed to systematically evaluate audio-visual models across controlled settings. DAVE alleviates existing limitations by (i) ensuring both modalities are necessary to answer correctly and (ii) decoupling evaluation into atomic subcategories. Our detailed analysis of state-of-the-art models reveals specific failure modes and provides targeted insights for improvement. By offering this standardized diagnostic framework, we aim to facilitate more robust development of audio-visual models.


ConfTuner: Training Large Language Models to Express Their Confidence Verbally

Neural Information Processing Systems

Large Language Models (LLMs) are increasingly deployed in high-stakes domains such as science, law, and healthcare, where accurate expressions of uncertainty are essential for reliability and trust. However, current LLMs are often observed to generate incorrect answers with high confidence--a phenomenon known as "overconfidence". Recent efforts have focused on calibrating LLMs' verbalized confidence: i.e., their expressions of confidence in text form, such as "I am 80% confident that...". Existing approaches either rely on prompt engineering or fine-tuning with heuristically generated uncertainty estimates, both of which have limited effectiveness and generalizability. Motivated by the notion of proper scoring rules for calibration in classical machine learning models, we introduce ConfTuner, a simple and efficient fine-tuning method that introduces minimal overhead and does not require ground-truth confidence scores or proxy confidence estimates. ConfTuner relies on a new loss function, tokenized Brier score, which we theoretically prove to be a proper scoring rule, intuitively meaning that it "correctly incentivizes the model to report its true probability of being correct". ConfTuner improves calibration across diverse reasoning tasks and generalizes to black-box models such as GPT-4o. Our results further show that better-calibrated confidence enables downstream gains in self-correction and model cascade, advancing the development of trustworthy LLM systems.


ADataset for Distilling Knowledge Priors from Literature for Therapeutic Design

Neural Information Processing Systems

AI-driven discovery can greatly reduce design time and enhance new therapeutics' effectiveness. Models using simulators explore broad design spaces but risk violating implicit constraints due to a lack of experimental priors. For example, in a new analysis across diverse models on the GuacaMol benchmark using supervised classifiers, over 60% of molecules proposed had a high probability of being mutagenic. In this work, we introduce Medex, a dataset of priors for design problems extracted from literature describing compounds used in lab settings. It is constructed with LLM pipelines for discovering therapeutic entities in relevant paragraphs and summarizing information in concise fair-use facts. Medex consists of 32.3 million pairs of natural language facts, and appropriate entity representations (i.e.


DualEquiNet: ADual-Space Hierarchical Equivariant Network for Large Biomolecules

Neural Information Processing Systems

Geometric graph neural networks (GNNs) that respect E(3) symmetries have achieved strong performance on small molecule modeling, but they face scalability and expressiveness challenges when applied to large biomolecules such as RNA and proteins. These systems require models that can simultaneously capture fine-grained atomic interactions, long-range dependencies across spatially distant components, and biologically relevant hierarchical structure--such as atoms forming residues, which in turn form higher-order domains. Existing geometric GNNs, which typically operate exclusively in either Euclidean or Spherical Harmonics space, are limited in their ability to capture both the fine-scale atomic details and the long-range, symmetry-aware dependencies required for modeling the multi-scale structure of large biomolecules. We introduce DualEquiNet, a Dual-Space Hierarchical Equivariant Network that constructs complementary representations in both Euclidean and Spherical Harmonics spaces to capture local geometry and global symmetry-aware features. DualEquiNet employs bidirectional cross-space message passing and a novel Cross-Space Interaction Pooling mechanism to hierarchically aggregate atomic features into biologically meaningful units, such as residues, enabling efficient and expressive multi-scale modeling for large biomolecular systems. DualEquiNet achieves state-of-the-art performance on multiple existing benchmarks for RNA property prediction and protein modeling, and outperforms prior methods on two newly introduced 3D structural benchmarks demonstrating its broad effectiveness across a range of large biomolecule modeling tasks.


Who Speaks for the Trigger Dynamic Expert Routing in Mixture of Experts Transformers

Neural Information Processing Systems

Large language models (LLMs) with Mixture-of-Experts (MoE) architectures achieve impressive performance and efficiency by dynamically routing inputs to specialized subnetworks, known as experts. However, this sparse routing mechanism inherently exhibits task preferences due to expert specialization, introducing a new and underexplored vulnerability to backdoor attacks. In this work, we investigate the feasibility and effectiveness of injecting backdoors into MoE-based LLMs by exploiting their inherent expert routing preferences. We thus propose BadSwitch, a novel backdoor framework that integrates task-coupled dynamic trigger optimization with a sensitivity-guided Top-S expert tracing mechanism. Our approach jointly optimizes trigger embeddings during pretraining while identifying S most sensitive experts, subsequently constraining the Top-K gating mechanism to these targeted experts. Unlike traditional backdoor attacks that rely on superficial data poisoning or model editing, BadSwitch primarily embeds malicious triggers into expert routing paths with strong task affinity, enabling precise and stealthy model manipulation. Through comprehensive evaluations across three prominent MoE architectures (Switch Transformer, QwenMoE, and DeepSeekMoE), we demonstrate that BadSwitch can efficiently hijack pre-trained models with up to 100% success rate (ASR) while maintaining the highest clean accuracy (ACC) among all baselines. Furthermore, BadSwitch exhibits strong resilience against both text-level and model-level defense mechanisms, achieving 94.07%


How to Train Your LLMWeb Agent: AStatistical Diagnosis

Neural Information Processing Systems

LLM-based web agents have recently made significant progress, but much of it has occurred in closed-source systems, widening the gap with open-source alternatives. Progress has been held back by two key challenges, first, a narrow focus on singlestep tasks that overlooks the complexity of multi-step web interactions, and second, the high compute costs required to post-train LLM-based web agents. To address this, we present the first statistically grounded study on compute allocation for LLM web-agent post-training. Our approach uses a two-stage pipeline, training a Llama 3.1 8B student to imitate a Llama 3.3 70B teacher via SFT, followed by on-policy reinforcement learning. We find this process highly sensitive to hyperparameter choices in setting where exhaustive sweeps are impractical. To spare others from expensive trial-and-error, we sample 1,370 configurations and use bootstrapping to estimate effective hyperparameters. Our results show that combining SFT with on-policy RL consistently outperforms either approach alone on both WorkArena and MiniWob++. Further, this strategy only requires 55% of the compute to match the peak of pure SFT on MiniWob++, pushing the compute-performance Pareto frontier and is the only strategy that can close the gap with closed-source models.