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Improving Malaria Parasite Detection from Red Blood Cell using Deep Convolutional Neural Networks

arXiv.org Machine Learning

Malaria is a female anopheles mosquito-bite inflicted life-threatening disease which is considered endemic in many parts of the world. This article focuses on improving malaria detection from patches segmented from microscopic images of red blood cell smears by introducing a deep convolutional neural network. Compared to the traditional methods that use tedious hand engineering feature extraction, the proposed method uses deep learning in an end-to-end arrangement that performs both feature extraction and classification directly from the raw segmented patches of the red blood smears. The dataset used in this study was taken from National Institute of Health named NIH Malaria Dataset. The evaluation metric accuracy and loss along with 5-fold cross validation was used to compare and select the best performing architecture. To maximize the performance, existing standard pre-processing techniques from the literature has also been experimented. In addition, several other complex architectures have been implemented and tested to pick the best performing model. A holdout test has also been conducted to verify how well the proposed model generalizes on unseen data. Our best model achieves an accuracy of almost 97.77%.


LSTM based Similarity Measurement with Spectral Clustering for Speaker Diarization

arXiv.org Machine Learning

More and more neural network approaches have achieved considerable improvement upon submodules of speaker diarization system, including speaker change detection and segment-wise speaker embedding extraction. Still, in the clustering stage, traditional algorithms like probabilistic linear discriminant analysis (PLDA) are widely used for scoring the similarity between two speech segments. In this paper, we propose a supervised method to measure the similarity matrix between all segments of an audio recording with sequential bidirectional long short-term memory networks (Bi-LSTM). Spectral clustering is applied on top of the similarity matrix to further improve the performance. Experimental results show that our system significantly outperforms the state-of-the-art methods and achieves a diarization error rate of 6.63% on the NIST SRE 2000 CALL-HOME database.


Optimal Transport-based Alignment of Learned Character Representations for String Similarity

arXiv.org Machine Learning

String similarity models are vital for record linkage, entity resolution, and search. In this work, we present STANCE --a learned model for computing the similarity of two strings. Our approach encodes the characters of each string, aligns the encodings using Sinkhorn Iteration (alignment is posed as an instance of optimal transport) and scores the alignment with a convolutional neural network. We evaluate STANCE's ability to detect whether two strings can refer to the same entity--a task we term alias detection. We construct five new alias detection datasets (and make them publicly available). We show that STANCE or one of its variants outperforms both state-of-the-art and classic, parameter-free similarity models on four of the five datasets. We also demonstrate STANCE's ability to improve downstream tasks by applying it to an instance of cross-document coreference and show that it leads to a 2.8 point improvement in B^3 F1 over the previous state-of-the-art approach.


Convolutional neural network stacking for medical image segmentation in CT scans

arXiv.org Machine Learning

Computed tomography (CT) data poses many challenges to medical image segmentation based on convolutional neural networks(CNNs). The main challenges in handling CT scans with CNN are the scale of data (large range of Hounsfield Units) and the processing of the slices. In this paper, we consider a framework, which addresses these demands regarding the data pre-processing, the data augmentation, and the CNN architecture itself. For this purpose, we present a data preprocessing and an augmentation method tailored to CT data. We evaluate and compare different input dimensionalities and two different CNN architectures. One of the architectures is a modified U-Net and the other a modified Mixed-Scale Dense Network (MS-D Net). Thus, we compare dilated convolutions for parallel multi-scale processing to the U-Net approach with traditional scaling operations based on the different input dimensionalities. Finally, we merge a set of 3D modified MS-D Nets and a set of 2D modified U-Nets as a stacked CNN-model to combine the different strengths of both model.


Spiking Neural Networks and Online Learning: An Overview and Perspectives

arXiv.org Artificial Intelligence

Applications that generate huge amounts of data in the form of fast streams are becoming increasingly prevalent, being therefore necessary to learn in an online manner. These conditions usually impose memory and processing time restrictions, and they often turn into evolving environments where a change may affect the input data distribution. Such a change causes that predictive models trained over these stream data become obsolete and do not adapt suitably to new distributions. Specially in these non-stationary scenarios, there is a pressing need for new algorithms that adapt to these changes as fast as possible, while maintaining good performance scores. Unfortunately, most off-the-shelf classification models need to be retrained if they are used in changing environments, and fail to scale properly. Spiking Neural Networks have revealed themselves as one of the most successful approaches to model the behavior and learning potential of the brain, and exploit them to undertake practical online learning tasks. Besides, some specific flavors of Spiking Neural Networks can overcome the necessity of retraining after a drift occurs. This work intends to merge both fields by serving as a comprehensive overview, motivating further developments that embrace Spiking Neural Networks for online learning scenarios, and being a friendly entry point for non-experts.


Structured Fusion Networks for Dialog

arXiv.org Artificial Intelligence

Neural dialog models have exhibited strong performance, however their end-to-end nature lacks a representation of the explicit structure of dialog. This results in a loss of generalizability, controllability and a data-hungry nature. Conversely, more traditional dialog systems do have strong models of explicit structure. This paper introduces several approaches for explicitly incorporating structure into neural models of dialog. Structured Fusion Networks first learn neural dialog modules corresponding to the structured components of traditional dialog systems and then incorporate these modules in a higher-level generative model. Structured Fusion Networks obtain strong results on the MultiWOZ dataset, both with and without reinforcement learning. Structured Fusion Networks are shown to have several valuable properties, including better domain generalizability, improved performance in reduced data scenarios and robustness to divergence during reinforcement learning.


Discourse Marker Augmented Network with Reinforcement Learning for Natural Language Inference

arXiv.org Artificial Intelligence

Natural Language Inference (NLI), also known as Recognizing Textual Entailment (RTE), is one of the most important problems in natural language processing. It requires to infer the logical relationship between two given sentences. While current approaches mostly focus on the interaction architectures of the sentences, in this paper, we propose to transfer knowledge from some important discourse markers to augment the quality of the NLI model. We observe that people usually use some discourse markers such as "so" or "but" to represent the logical relationship between two sentences. These words potentially have deep connections with the meanings of the sentences, thus can be utilized to help improve the representations of them. Moreover, we use reinforcement learning to optimize a new objective function with a reward defined by the property of the NLI datasets to make full use of the labels information. Experiments show that our method achieves the state-of-the-art performance on several large-scale datasets.


Adaptive Regularization via Residual Smoothing in Deep Learning Optimization

arXiv.org Machine Learning

We present an adaptive regularization algorithm that can be effectively applied to the optimization problem in deep learning framework. Our regularization algorithm aims to take into account the fitness of data to the current state of model in the determination of regularity to achieve better generalization. The degree of regularization at each element in the target space of the neural network architecture is determined based on the residual at each optimization iteration in an adaptive way. Our adaptive regularization algorithm is designed to apply a diffusion process driven by the heat equation with spatially varying diffusivity depending on the probability density function following a certain distribution of residual. Our data-driven regularity is imposed by adaptively smoothing a simplified objective function in which the explicit regularization term is omitted in an alternating manner between the evaluation of residual and the determination of the degree of its regularity. The effectiveness of our algorithm is empirically demonstrated by the numerical experiments in the application of image classification problems, indicating that our algorithm outperforms other commonly used optimization algorithms in terms of generalization using popular deep learning models and benchmark datasets.


Trainability and Data-dependent Initialization of Over-parameterized ReLU Neural Networks

arXiv.org Machine Learning

A neural network is said to be over-specified if its representational power is more than needed, and is said to be over-parameterized if the number of parameters is larger than the number of training data. In both cases, the number of neurons is larger than what it is necessary. In many applications, over-specified or over-parameterized neural networks are successfully employed and shown to be trained effectively. In this paper, we study the trainability of ReLU networks, a necessary condition for the successful training. We show that over-parameterization is both a necessary and a sufficient condition for minimizing the training loss. Specifically, we study the probability distribution of the number of active neurons at the initialization. We say a network is trainable if the number of active neurons is sufficiently large for a learning task. With this notion, we derive an upper bound of the probability of the successful training. Furthermore, we propose a data-dependent initialization method in the over-parameterized setting. Numerical examples are provided to demonstrate the effectiveness of the method and our theoretical findings.


Interpretable and Steerable Sequence Learning via Prototypes

arXiv.org Machine Learning

One of the major challenges in machine learning nowadays is to provide predictions with not only high accuracy but also user-friendly explanations. Although in recent years we have witnessed increasingly popular use of deep neural networks for sequence modeling, it is still challenging to explain the rationales behind the model outputs, which is essential for building trust and supporting the domain experts to validate, critique and refine the model. We propose ProSeNet, an interpretable and steerable deep sequence model with natural explanations derived from case-based reasoning. The prediction is obtained by comparing the inputs to a few prototypes, which are exemplar cases in the problem domain. For better interpretability, we define several criteria for constructing the prototypes, including simplicity, diversity, and sparsity and propose the learning objective and the optimization procedure. ProSeNet also provides a user-friendly approach to model steering: domain experts without any knowledge on the underlying model or parameters can easily incorporate their intuition and experience by manually refining the prototypes. We conduct experiments on a wide range of real-world applications, including predictive diagnostics for automobiles, ECG, and protein sequence classification and sentiment analysis on texts. The result shows that ProSeNet can achieve accuracy on par with state-of-the-art deep learning models. We also evaluate the interpretability of the results with concrete case studies. Finally, through user study on Amazon Mechanical Turk (MTurk), we demonstrate that the model selects high-quality prototypes which align well with human knowledge and can be interactively refined for better interpretability without loss of performance.