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 Deep Learning


A deep active learning system for species identification and counting in camera trap images

arXiv.org Machine Learning

Biodiversity conservation depends on accurate, up-to-date information about wildlife population distributions. Motion-activated cameras, also known as camera traps, are a critical tool for population surveys, as they are cheap and non-intrusive. However, extracting useful information from camera trap images is a cumbersome process: a typical camera trap survey may produce millions of images that require slow, expensive manual review. Consequently, critical information is often lost due to resource limitations, and critical conservation questions may be answered too slowly to support decision-making. Computer vision is poised to dramatically increase efficiency in image-based biodiversity surveys, and recent studies have harnessed deep learning techniques for automatic information extraction from camera trap images. However, the accuracy of results depends on the amount, quality, and diversity of the data available to train models, and the literature has focused on projects with millions of relevant, labeled training images. Many camera trap projects do not have a large set of labeled images and hence cannot benefit from existing machine learning techniques. Furthermore, even projects that do have labeled data from similar ecosystems have struggled to adopt deep learning methods because image classification models overfit to specific image backgrounds (i.e., camera locations). In this paper, we focus not on automating the labeling of camera trap images, but on accelerating this process. We combine the power of machine intelligence and human intelligence to build a scalable, fast, and accurate active learning system to minimize the manual work required to identify and count animals in camera trap images. Our proposed scheme can match the state of the art accuracy on a 3.2 million image dataset with as few as 14,100 manual labels, which means decreasing manual labeling effort by over 99.5%.


Learning to Make Generalizable and Diverse Predictions for Retrosynthesis

arXiv.org Machine Learning

We propose a new model for making generalizable and diverse retrosynthetic reaction predictions. Given a target compound, the task is to predict the likely chemical reactants to produce the target. This generative task can be framed as a sequence-to-sequence problem by using the SMILES representations of the molecules. Building on top of the popular Transformer architecture, we propose two novel pre-training methods that construct relevant auxiliary tasks (plausible reactions) for our problem. Furthermore, we incorporate a discrete latent variable model into the architecture to encourage the model to produce a diverse set of alternative predictions. On the 50k subset of reaction examples from the United States patent literature (USPTO-50k) benchmark dataset, our model greatly improves performance over the baseline, while also generating predictions that are more diverse.


Signal Combination for Language Identification

arXiv.org Machine Learning

ABSTRACT Google's multilingual speech recognition system combines low-level acoustic signals with language-specific recognizer signals to better predict the language of an utterance. This paper presents our experience with different signal combination methods to improve overall language identification accuracy. We compare the performance of a lattice-based ensemble model and a deep neural network model to combine signals from recognizers with that of a baseline that only uses low-level acoustic signals. Experimental results show that the deep neural network model outperforms the lattice-based ensemble model, and it reduced the error rate from 5 .5% in the baseline to 4 .3%, Index T erms-- Signal combination, language identification, lattice regression, deep neural network 1. INTRODUCTION Multilingual speech recognition is an important feature for modern speech recognition systems allowing users to speak in more than a single, preset language.


You May Not Need Order in Time Series Forecasting

arXiv.org Machine Learning

Time series forecasting with limited data is a challenging yet critical task. While transformers have achieved outstanding performances in time series forecasting, they often require many training samples due to the large number of trainable parameters. In this paper, we propose a training technique for transformers that prepares the training windows through random sampling. As input time steps need not be consecutive, the number of distinct samples increases from linearly to combinatorially many. By breaking the temporal order, this technique also helps transformers to capture dependencies among time steps in finer granularity. We achieve competitive results compared to the state-of-the-art on real-world datasets.


On Predictive Information Sub-optimality of RNNs

arXiv.org Machine Learning

Certain biological neurons demonstrate a remarkable capability to optimally compress the history of sensory inputs while being maximally informative about the future. In this work, we investigate if the same can be said of artificial neurons in recurrent neural networks (RNNs) trained with maximum likelihood. In experiments on two datasets, restorative Brownian motion and a hand-drawn sketch dataset, we find that RNNs are sub-optimal in the information plane. Instead of optimally compressing past information, they extract additional information that is not relevant for predicting the future. Overcoming this limitation may require alternative training procedures and architectures, or objectives beyond maximum likelihood estimation. Remembering past events is a critical component of predicting the future and acting in the world. An information-theoretic quantification of how much observing the past can help in predicting the future is given by the predictive information (Bialek et al., 2001). The predictive information is the mutual information (MI) between a finite set of observations (the past of a sequence) and an infinite number of additional draws from the same process (the future of a sequence).


Icentia11K: An Unsupervised Representation Learning Dataset for Arrhythmia Subtype Discovery

arXiv.org Machine Learning

We release the largest public ECG dataset of continuous raw signals for representation learning containing 11 thousand patients and 2 billion labelled beats. Our goal is to enable semi-supervised ECG models to be made as well as to discover unknown subtypes of arrhythmia and anomalous ECG signal events. To this end, we propose an unsupervised representation learning task, evaluated in a semi-supervised fashion. We provide a set of baselines for different feature extractors that can be built upon. Additionally, we perform qualitative evaluations on results from PCA embeddings, where we identify some clustering of known sub-types indicating the potential for representation learning in arrhythmia sub-type discovery. Arrhythmia detection is presently performed by cardiologists or technologists familiar with ECG readings. Recently, supervised machine learning has been successfully applied to perform detection of certain types of arrhythmia (Hannun et al., 2019; Yฤฑldฤฑrฤฑm et al., 2018; Minchol e & Rodriguez, 2019; Porumb et al., 2020).


Multi-Resolution Weak Supervision for Sequential Data

arXiv.org Machine Learning

Since manually labeling training data is slow and expensive, recent industrial and scientific research efforts have turned to weaker or noisier forms of supervision sources. However, existing weak supervision approaches fail to model multi-resolution sources for sequential data, like video, that can assign labels to individual elements or collections of elements in a sequence. A key challenge in weak supervision is estimating the unknown accuracies and correlations of these sources without using labeled data. Multi-resolution sources exacerbate this challenge due to complex correlations and sample complexity that scales in the length of the sequence. We propose Dugong, the first framework to model multi-resolution weak supervision sources with complex correlations to assign probabilistic labels to training data. Theoretically, we prove that Dugong, under mild conditions, can uniquely recover the unobserved accuracy and correlation parameters and use parameter sharing to improve sample complexity. Our method assigns clinician-validated labels to population-scale biomedical video repositories, helping outperform traditional supervision by 36.8 F1 points and addressing a key use case where machine learning has been severely limited by the lack of expert labeled data. On average, Dugong improves over traditional supervision by 16.0 F1 points and existing weak supervision approaches by 24.2 F1 points across several video and sensor classification tasks.


Learning to Learn by Zeroth-Order Oracle

arXiv.org Machine Learning

In the learning to learn (L2L) framework, we cast the design of optimization algorithms as a machine learning problem and use deep neural networks to learn the update rules. In this paper, we extend the L2L framework to zeroth-order (ZO) optimization setting, where no explicit gradient information is available. Our learned optimizer, modeled as recurrent neural network (RNN), first approximates gradient by ZO gradient estimator and then produces parameter update utilizing the knowledge of previous iterations. To reduce high variance effect due to ZO gradient estimator, we further introduce another RNN to learn the Gaussian sampling rule and dynamically guide the query direction sampling. Our learned optimizer outperforms hand-designed algorithms in terms of convergence rate and final solution on both synthetic and practical ZO optimization tasks (in particular, the black-box adversarial attack task, which is one of the most widely used tasks of ZO optimization). We finally conduct extensive analytical experiments to demonstrate the effectiveness of our proposed optimizer. Learning to learn (L2L) is a recently proposed meta-learning framework where we leverage deep neural networks to learn optimization algorithms automatically. The most common choice for the learned optimizer is recurrent neural network (RNN) since it can capture long-term dependencies and propose parameter updates based on knowledge of previous iterations. By training RNN op-timizers on predefined optimization tasks, the optimizers are capable of learning to explore the loss landscape and adaptively choose descent directions and steps (Lv et al., 2017).


Self-Educated Language Agent With Hindsight Experience Replay For Instruction Following

arXiv.org Machine Learning

Language creates a compact representation of the world and allows the description of unlimited situations and objectives through compositionality. These properties make it a natural fit to guide the training of interactive agents as it could ease recurrent challenges in Reinforcement Learning such as sample complexity, generalization, or multi-tasking. Yet, it remains an open-problem to relate language and RL in even simple instruction following scenarios. Current methods rely on expert demonstrations, auxiliary losses, or inductive biases in neural architectures. In this paper, we propose an orthogonal approach called Textual Hindsight Experience Replay (THER) that extends the Hindsight Experience Replay approach to the language setting. Whenever the agent does not fulfill its instruction, THER learns to output a new directive that matches the agent trajectory, and it relabels the episode with a positive reward. To do so, THER learns to map a state into an instruction by using past successful trajectories, which removes the need to have external expert interventions to relabel episodes as in vanilla HER. We observe that this simple idea also initiates a learning synergy between language acquisition and policy learning on instruction following tasks in the BabyAI environment.


A Stochastic Extra-Step Quasi-Newton Method for Nonsmooth Nonconvex Optimization

arXiv.org Machine Learning

In this paper, a novel stochastic extra-step quasi-Newton method is developed to solve a class of nonsmooth nonconvex composite optimization problems. We assume that the gradient of the smooth part of the objective function can only be approximated by stochastic oracles. The proposed method combines general stochastic higher order steps derived from an underlying proximal type fixed-point equation with additional stochastic proximal gradient steps to guarantee convergence. Based on suitable bounds on the step sizes, we establish global convergence to stationary points in expectation and an extension of the approach using variance reduction techniques is discussed. Motivated by large-scale and big data applications, we investigate a stochastic coordinate-type quasi-Newton scheme that allows to generate cheap and tractable stochastic higher order directions. Finally, the proposed algorithm is tested on large-scale logistic regression and deep learning problems and it is shown that it compares favorably with other state-of-the-art methods.