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 Deep Learning


Towards Better Opioid Antagonists Using Deep Reinforcement Learning

arXiv.org Artificial Intelligence

Naloxone, an opioid antagonist, has been widely used to save lives from opioid overdose, a leading cause for death in the opioid epidemic. However, naloxone has short brain retention ability, which limits its therapeutic efficacy. Developing better opioid antagonists is critical in combating the opioid epidemic.Instead of exhaustively searching in a huge chemical space for better opioid antagonists, we adopt reinforcement learning which allows efficient gradient-based search towards molecules with desired physicochemical and/or biological properties. Specifically, we implement a deep reinforcement learning framework to discover potential lead compounds as better opioid antagonists with enhanced brain retention ability. A customized multi-objective reward function is designed to bias the generation towards molecules with both sufficient opioid antagonistic effect and enhanced brain retention ability. Thorough evaluation demonstrates that with this framework, we are able to identify valid, novel and feasible molecules with multiple desired properties, which has high potential in drug discovery.


Classification of COVID-19 in chest X-ray images using DeTraC deep convolutional neural network

arXiv.org Machine Learning

Chest X-ray is the first imaging technique that plays an important role in the diagnosis of COVID-19 disease. Due to the high availability of large-scale annotated image datasets, great success has been achieved using convolutional neural networks (CNN s) for image recognition and classification. However, due to the limited availability of annotated medical images, the classification of medical images remains the biggest challenge in medical diagnosis. Thanks to transfer learning, an effective mechanism that can provide a promising solution by transferring knowledge from generic object recognition tasks to domain-specific tasks. In this paper, we validate and adopt our previously developed CNN, called Decompose, Transfer, and Compose (DeTraC), for the classification of COVID-19 chest X-ray images. DeTraC can deal with any irregularities in the image dataset by investigating its class boundaries using a class decomposition mechanism. The experimental results showed the capability of DeTraC in the detection of COVID-19 cases from a comprehensive image dataset collected from several hospitals around the world. High accuracy of 95.12% (with a sensitivity of 97.91%, a specificity of 91.87%, and a precision of 93.36%) was achieved by DeTraC in the detection of COVID-19 X-ray images from normal, and severe acute respiratory syndrome cases.


Interval Neural Networks as Instability Detectors for Image Reconstructions

arXiv.org Machine Learning

This work investigates the detection of instabilities that may occur when utilizing deep learning models for image reconstruction tasks. Although neural networks often empirically outperform traditional reconstruction methods, their usage for sensitive medical applications remains controversial. Indeed, in a recent series of works, it has been demonstrated that deep learning approaches are susceptible to various types of instabilities, caused for instance by adversarial noise or out-of-distribution features. It is argued that this phenomenon can be observed regardless of the underlying architecture and that there is no easy remedy. Based on this insight, the present work demonstrates on two use cases how uncertainty quantification methods can be employed as instability detectors. In particular, it is shown that the recently proposed Interval Neural Networks are highly effective in revealing instabilities of reconstructions. Such an ability is crucial to ensure a safe use of deep learning-based methods for medical image reconstruction.


Financial Time Series Representation Learning

arXiv.org Machine Learning

This paper addresses the difficulty of forecasting multiple financial time series (TS) conjointly using deep neural networks (DNN). We investigate whether DNN-based models could forecast these TS more efficiently by learning their representation directly. To this end, we make use of the dynamic factor graph (DFG) from that we enhance by proposing a novel variable-length attention-based mechanism to render it memory-augmented. Using this mechanism, we propose an unsupervised DNN architecture for multivariate TS forecasting that allows to learn and take advantage of the relationships between these TS. We test our model on two datasets covering 19 years of investment funds activities. Our experimental results show that our proposed approach outperforms significantly typical DNN-based and statistical models at forecasting their 21-day price trajectory.


Log-Likelihood Ratio Minimizing Flows: Towards Robust and Quantifiable Neural Distribution Alignment

arXiv.org Machine Learning

Unsupervised distribution alignment has many applications in deep learning, including domain adaptation and unsupervised image-to-image translation. Most prior work on unsupervised distribution alignment relies either on minimizing simple non-parametric statistical distances such as maximum mean discrepancy, or on adversarial alignment. However, the former fails to capture the structure of complex real-world distributions, while the latter is difficult to train and does not provide any universal convergence guarantees or automatic quantitative validation procedures. In this paper we propose a new distribution alignment method based on a log-likelihood ratio statistic and normalizing flows. We show that, under certain assumptions, this combination yields a deep neural likelihood-based minimization objective that attains a known lower bound upon convergence. We experimentally verify that minimizing the resulting objective results in domain alignment that preserves the local structure of input domains.


Zero-shot and few-shot time series forecasting with ordinal regression recurrent neural networks

arXiv.org Machine Learning

Recurrent neural networks (RNNs) are state-of-the-art in several sequential learning tasks, but they often require considerable amounts of data to generalise well. For many time series forecasting (TSF) tasks, only a few dozens of observations may be available at training time, which restricts use of this class of models. We propose a novel RNN-based model that directly addresses this problem by learning a shared feature embedding over the space of many quantised time series. We show how this enables our RNN framework to accurately and reliably forecast unseen time series, even when there is little to no training data available.


Learning To Solve Differential Equations Across Initial Conditions

arXiv.org Machine Learning

Recently, there has been a lot of interest in using neural networks for solving partial differential equations. A number of neural network-based partial differential equation solvers have been formulated which provide performances equivalent, and in some cases even superior, to classical solvers. However, these neural solvers, in general, need to be retrained each time the initial conditions or the domain of the partial differential equation changes. In this work, we posit the problem of approximating the solution of a fixed partial differential equation for any arbitrary initial conditions as learning a conditional probability distribution. We demonstrate the utility of our method on Burger's Equation.


A Principled Approach to Learning Stochastic Representations for Privacy in Deep Neural Inference

arXiv.org Machine Learning

INFerence-as-a-Service (INFaaS) in the cloud has enabled the prevalent use of Deep Neural Networks (DNNs) in home automation, targeted advertising, machine vision, etc. The cloud receives the inference request as a raw input, containing a rich set of private information, that can be misused or leaked, possibly inadvertently. This prevalent setting can compromise the privacy of users during the inference phase. This paper sets out to provide a principled approach, dubbed Cloak, that finds optimal stochastic perturbations to obfuscate the private data before it is sent to the cloud. To this end, Cloak reduces the information content of the transmitted data while conserving the essential pieces that enable the request to be serviced accurately. The key idea is formulating the discovery of this stochasticity as an offline gradient-based optimization problem that reformulates a pre-trained DNN (with optimized known weights) as an analytical function of the stochastic perturbations. Using Laplace distribution as a parametric model for the stochastic perturbations, Cloak learns the optimal parameters using gradient descent and Monte Carlo sampling. This set of optimized Laplace distributions further guarantee that the injected stochasticity satisfies the -differential privacy criterion. Experimental evaluations with real-world datasets show that, on average, the injected stochasticity can reduce the information content in the input data by 80.07%, while incurring 7.12% accuracy loss.


Negative Margin Matters: Understanding Margin in Few-shot Classification

arXiv.org Machine Learning

This paper introduces a negative margin loss to metric learning based few-shot learning methods. The negative margin loss significantly outperforms regular softmax loss, and achieves state-of-the-art accuracy on three standard few-shot classification benchmarks with few bells and whistles. These results are contrary to the common practice in the metric learning field, that the margin is zero or positive. To understand why the negative margin loss performs well for the few-shot classification, we analyze the discriminability of learned features w.r.t different margins for training and novel classes, both empirically and theoretically. We find that although negative margin reduces the feature discriminability for training classes, it may also avoid falsely mapping samples of the same novel class to multiple peaks or clusters, and thus benefit the discrimination of novel classes.


Corella: A Private Multi Server Learning Approach based on Correlated Queries

arXiv.org Machine Learning

The emerging applications of machine learning algorithms on mobile devices motivate us to offload the computation tasks of training a model or deploying a trained one to the cloud. One of the major challenges in this setup is to guarantee the privacy of the client's data. Various methods have been proposed to protect privacy in the literature. Those include (i) adding noise to the client data, which reduces the accuracy of the result, (ii) using secure multiparty computation, which requires significant communication among the computing nodes or with the client, (iii) relying on homomorphic encryption methods, which significantly increases computation load. In this paper, we propose an alternative approach to protect the privacy of user data. The proposed scheme relies on a cluster of servers where at most $T$ of them for some integer $T$, may collude, that each running a deep neural network. Each server is fed with the client data, added with a $\textit{strong}$ noise. This makes the information leakage to each server information-theoretically negligible. On the other hand, the added noises for different servers are $\textit{correlated}$. This correlation among queries allows the system to be $\textit{trained}$ such that the client can recover the final result with high accuracy, by combining the outputs of the servers, with minor computation efforts. Simulation results for various datasets demonstrate the accuracy of the proposed approach.