Deep Learning
A Global Benchmark of Algorithms for Segmenting Late Gadolinium-Enhanced Cardiac Magnetic Resonance Imaging
Xiong, Zhaohan, Xia, Qing, Hu, Zhiqiang, Huang, Ning, Bian, Cheng, Zheng, Yefeng, Vesal, Sulaiman, Ravikumar, Nishant, Maier, Andreas, Yang, Xin, Heng, Pheng-Ann, Ni, Dong, Li, Caizi, Tong, Qianqian, Si, Weixin, Puybareau, Elodie, Khoudli, Younes, Geraud, Thierry, Chen, Chen, Bai, Wenjia, Rueckert, Daniel, Xu, Lingchao, Zhuang, Xiahai, Luo, Xinzhe, Jia, Shuman, Sermesant, Maxime, Liu, Yashu, Wang, Kuanquan, Borra, Davide, Masci, Alessandro, Corsi, Cristiana, de Vente, Coen, Veta, Mitko, Karim, Rashed, Preetha, Chandrakanth Jayachandran, Engelhardt, Sandy, Qiao, Menyun, Wang, Yuanyuan, Tao, Qian, Nunez-Garcia, Marta, Camara, Oscar, Savioli, Nicolo, Lamata, Pablo, Zhao, Jichao
Segmentation of cardiac images, particularly late gadolinium-enhanced magnetic resonance imaging (LGE-MRI) widely used for visualizing diseased cardiac structures, is a crucial first step for clinical diagnosis and treatment. However, direct segmentation of LGE-MRIs is challenging due to its attenuated contrast. Since most clinical studies have relied on manual and labor-intensive approaches, automatic methods are of high interest, particularly optimized machine learning approaches. To address this, we organized the "2018 Left Atrium Segmentation Challenge" using 154 3D LGE-MRIs, currently the world's largest cardiac LGE-MRI dataset, and associated labels of the left atrium segmented by three medical experts, ultimately attracting the participation of 27 international teams. In this paper, extensive analysis of the submitted algorithms using technical and biological metrics was performed by undergoing subgroup analysis and conducting hyper-parameter analysis, offering an overall picture of the major design choices of convolutional neural networks (CNNs) and practical considerations for achieving state-of-the-art left atrium segmentation. Results show the top method achieved a dice score of 93.2% and a mean surface to a surface distance of 0.7 mm, significantly outperforming prior state-of-the-art. Particularly, our analysis demonstrated that double, sequentially used CNNs, in which a first CNN is used for automatic region-of-interest localization and a subsequent CNN is used for refined regional segmentation, achieved far superior results than traditional methods and pipelines containing single CNNs. This large-scale benchmarking study makes a significant step towards much-improved segmentation methods for cardiac LGE-MRIs, and will serve as an important benchmark for evaluating and comparing the future works in the field.
Generative Adversarial Networks (GANs): Challenges, Solutions, and Future Directions
Generative Adversarial Networks (GANs) is a novel class of deep generative models which has recently gained significant attention. GANs learns complex and high-dimensional distributions implicitly over images, audio, and data. However, there exists major challenges in training of GANs, i.e., mode collapse, non-convergence and instability, due to inappropriate design of network architecture, use of objective function and selection of optimization algorithm. Recently, to address these challenges, several solutions for better design and optimization of GANs have been investigated based on techniques of re-engineered network architectures, new objective functions and alternative optimization algorithms. To the best of our knowledge, there is no existing survey that has particularly focused on broad and systematic developments of these solutions. In this study, we perform a comprehensive survey of the advancements in GANs design and optimization solutions proposed to handle GANs challenges. We first identify key research issues within each design and optimization technique and then propose a new taxonomy to structure solutions by key research issues. In accordance with the taxonomy, we provide a detailed discussion on different GANs variants proposed within each solution and their relationships. Finally, based on the insights gained, we present the promising research directions in this rapidly growing field.
Machine Learning on Graphs: A Model and Comprehensive Taxonomy
Chami, Ines, Abu-El-Haija, Sami, Perozzi, Bryan, Ré, Christopher, Murphy, Kevin
There has been a surge of recent interest in learning representations for graph-structured data. Graph representation learning methods have generally fallen into three main categories, based on the availability of labeled data. The first, network embedding (such as shallow graph embedding or graph auto-encoders), focuses on learning unsupervised representations of relational structure. The second, graph regularized neural networks, leverages graphs to augment neural network losses with a regularization objective for semi-supervised learning. The third, graph neural networks, aims to learn differentiable functions over discrete topologies with arbitrary structure. However, despite the popularity of these areas there has been surprisingly little work on unifying the three paradigms. Here, we aim to bridge the gap between graph neural networks, network embedding and graph regularization models. We propose a comprehensive taxonomy of representation learning methods for graph-structured data, aiming to unify several disparate bodies of work. Specifically, we propose a Graph Encoder Decoder Model (GRAPHEDM), which generalizes popular algorithms for semi-supervised learning on graphs (e.g. GraphSage, Graph Convolutional Networks, Graph Attention Networks), and unsupervised learning of graph representations (e.g. DeepWalk, node2vec, etc) into a single consistent approach. To illustrate the generality of this approach, we fit over thirty existing methods into this framework. We believe that this unifying view both provides a solid foundation for understanding the intuition behind these methods, and enables future research in the area.
Planning from Images with Deep Latent Gaussian Process Dynamics
Bosch, Nathanael, Achterhold, Jan, Leal-Taixé, Laura, Stückler, Jörg
Planning is a powerful approach to control problems with known environment dynamics. In unknown environments the agent needs to learn a model of the system dynamics to make planning applicable. This is particularly challenging when the underlying states are only indirectly observable through images. We propose to learn a deep latent Gaussian process dynamics (DLGPD) model that learns low-dimensional system dynamics from environment interactions with visual observations. The method infers latent state representations from observations using neural networks and models the system dynamics in the learned latent space with Gaussian processes. All parts of the model can be trained jointly by optimizing a lower bound on the likelihood of transitions in image space. We evaluate the proposed approach on the pendulum swing-up task while using the learned dynamics model for planning in latent space in order to solve the control problem. We also demonstrate that our method can quickly adapt a trained agent to changes in the system dynamics from just a few rollouts. We compare our approach to a state-of-the-art purely deep learning based method and demonstrate the advantages of combining Gaussian processes with deep learning for data efficiency and transfer learning.
Can a powerful neural network be a teacher for a weaker neural network?
Landro, Nicola, Gallo, Ignazio, La Grassa, Riccardo
The transfer learning technique is widely used to learning in one context and applying it to another, i.e. the capacity to apply acquired knowledge and skills to new situations. But is it possible to transfer the learning from a deep neural network to a weaker neural network? Is it possible to improve the performance of a weak neural network using the knowledge acquired by a more powerful neural network? In this work, during the training process of a weak network, we add a loss function that minimizes the distance between the features previously learned from a strong neural network with the features that the weak network must try to learn. To demonstrate the effectiveness and robustness of our approach, we conducted a large number of experiments using three known datasets and demonstrated that a weak neural network can increase its performance if its learning process is driven by a more powerful neural network.
Comparison and Benchmarking of AI Models and Frameworks on Mobile Devices
Luo, Chunjie, He, Xiwen, Zhan, Jianfeng, Wang, Lei, Gao, Wanling, Dai, Jiahui
Due to increasing amounts of data and compute resources, deep learning achieves many successes in various domains. The application of deep learning on the mobile and embedded devices is taken more and more attentions, benchmarking and ranking the AI abilities of mobile and embedded devices becomes an urgent problem to be solved. Considering the model diversity and framework diversity, we propose a benchmark suite, AIoTBench, which focuses on the evaluation of the inference abilities of mobile and embedded devices. AIoTBench covers three typical heavy-weight networks: ResNet50, InceptionV3, DenseNet121, as well as three light-weight networks: SqueezeNet, MobileNetV2, MnasNet. Each network is implemented by three frameworks which are designed for mobile and embedded devices: Tensorflow Lite, Caffe2, Pytorch Mobile. To compare and rank the AI capabilities of the devices, we propose two unified metrics as the AI scores: Valid Images Per Second (VIPS) and Valid FLOPs Per Second (VOPS). Currently, we have compared and ranked 5 mobile devices using our benchmark. This list will be extended and updated soon after.
Efficient Exact Verification of Binarized Neural Networks
We present a new system, EEV, for verifying binarized neural networks (BNNs). We formulate BNN verification as a Boolean satisfiability problem (SAT) with reified cardinality constraints of the form $y = (x_1 + \cdots + x_n \le b)$, where $x_i$ and $y$ are Boolean variables possibly with negation and $b$ is an integer constant. We also identify two properties, specifically balanced weight sparsity and lower cardinality bounds, that reduce the verification complexity of BNNs. EEV contains both a SAT solver enhanced to handle reified cardinality constraints natively and novel training strategies designed to reduce verification complexity by delivering networks with improved sparsity properties and cardinality bounds. We demonstrate the effectiveness of EEV by presenting the first exact verification results for $\ell_{\infty}$-bounded adversarial robustness of nontrivial convolutional BNNs on the MNIST and CIFAR10 datasets. Our results also show that, depending on the dataset and network architecture, our techniques verify BNNs between a factor of ten to ten thousand times faster than the best previous exact verification techniques for either binarized or real-valued networks.
Reputation Agent: Prompting Fair Reviews in Gig Markets
Toxtli, Carlos, Richmond-Fuller, Angela, Savage, Saiph
Our study presents a new tool, Reputation Agent, to promote fairer reviews from requesters (employers or customers) on gig markets. Unfair reviews, created when requesters consider factors outside of a worker's control, are known to plague gig workers and can result in lost job opportunities and even termination from the marketplace. Our tool leverages machine learning to implement an intelligent interface that: (1) uses deep learning to automatically detect when an individual has included unfair factors into her review (factors outside the worker's control per the policies of the market); and (2) prompts the individual to reconsider her review if she has incorporated unfair factors. To study the effectiveness of Reputation Agent, we conducted a controlled experiment over different gig markets. Our experiment illustrates that across markets, Reputation Agent, in contrast with traditional approaches, motivates requesters to review gig workers' performance more fairly. We discuss how tools that bring more transparency to employers about the policies of a gig market can help build empathy thus resulting in reasoned discussions around potential injustices towards workers generated by these interfaces. Our vision is that with tools that promote truth and transparency we can bring fairer treatment to gig workers.
Generating Thermal Image Data Samples using 3D Facial Modelling Techniques and Deep Learning Methodologies
Farooq, Muhammad Ali, Corcoran, Peter
Methods for generating synthetic data have become of increasing importance to build large datasets required for Convolution Neural Networks (CNN) based deep learning techniques for a wide range of computer vision applications. In this work, we extend existing methodologies to show how 2D thermal facial data can be mapped to provide 3D facial models. For the proposed research work we have used tufts datasets for generating 3D varying face poses by using a single frontal face pose. The system works by refining the existing image quality by performing fusion based image preprocessing operations. The refined outputs have better contrast adjustments, decreased noise level and higher exposedness of the dark regions. It makes the facial landmarks and temperature patterns on the human face more discernible and visible when compared to original raw data. Different image quality metrics are used to compare the refined version of images with original images. In the next phase of the proposed study, the refined version of images is used to create 3D facial geometry structures by using Convolution Neural Networks (CNN). The generated outputs are then imported in blender software to finally extract the 3D thermal facial outputs of both males and females. The same technique is also used on our thermal face data acquired using prototype thermal camera (developed under Heliaus EU project) in an indoor lab environment which is then used for generating synthetic 3D face data along with varying yaw face angles and lastly facial depth map is generated.
Deep transfer learning for improving single-EEG arousal detection
Olesen, Alexander Neergaard, Jennum, Poul, Mignot, Emmanuel, Sorensen, Helge B. D.
Datasets in sleep science present challenges for machine learning algorithms due to differences in recording setups across clinics. We investigate two deep transfer learning strategies for overcoming the channel mismatch problem for cases where two datasets do not contain exactly the same setup leading to degraded performance in single-EEG models. Specifically, we train a baseline model on multivariate polysomnography data and subsequently replace the first two layers to prepare the architecture for single-channel electroencephalography data. Using a fine-tuning strategy, our model yields similar performance to the baseline model (F1=0.682 and F1=0.694, respectively), and was significantly better than a comparable single-channel model. Our results are promising for researchers working with small databases who wish to use deep learning models pre-trained on larger databases.