Deep Learning
AtlasMorph: Learning conditional deformable templates for brain MRI
Rakic, Marianne, Hoopes, Andrew, Abulnaga, S. Mazdak, Sabuncu, Mert R., Guttag, John V., Dalca, Adrian V.
Deformable templates, or atlases, are images that represent a prototypical anatomy for a population, and are often enhanced with probabilistic anatomical label maps. They are commonly used in medical image analysis for population studies and computational anatomy tasks such as registration and segmentation. Because developing a template is a computationally expensive process, relatively few templates are available. As a result, analysis is often conducted with sub-optimal templates that are not truly representative of the study population, especially when there are large variations within this population. W e propose a machine learning framework that uses con-volutional registration neural networks to efficiently learn a function that outputs templates conditioned on subject-specific attributes, such as age and sex. W e also leverage segmentations, when available, to produce anatomical segmentation maps for the resulting templates. The learned network can also be used to register subject images to the templates. W e demonstrate our method on a compilation of 3D brain MRI datasets, and show that it can learn high-quality templates that are representative of populations. W e find that annotated conditional templates enable better registration than their unlabeled unconditional counterparts, and outperform other templates construction methods.
Artificial Intelligence-driven Intelligent Wearable Systems: A full-stack Integration from Material Design to Personalized Interaction
Zhao, Jingyi, Shi, Daqian, Wang, Zhengda, Tang, Xiongfeng, Qin, Yanguo
Intelligent wearable systems are at the forefront of precision medicine and play a crucial role in enhancing human-machine interaction. Traditional devices often encounter limitations due to their dependence on empirical material design and basic signal processing techniques. To overcome these issues, we introduce the concept of Human-Symbiotic Health Intelligence (HSHI), which is a framework that integrates multi-modal sensor networks with edge-cloud collaborative computing and a hybrid approach to data and knowledge modeling. HSHI is designed to adapt dynamically to both inter-individual and intra-individual variability, transitioning health management from passive monitoring to an active collaborative evolution. The framework incorporates AI-driven optimization of materials and micro-structures, provides robust interpretation of multi-modal signals, and utilizes a dual mechanism that merges population-level insights with personalized adaptations. Moreover, the integration of closed-loop optimization through reinforcement learning and digital twins facilitates customized interventions and feedback. In general, HSHI represents a significant shift in healthcare, moving towards a model that emphasizes prevention, adaptability, and a harmonious relationship between technology and health management.
ForgeDAN: An Evolutionary Framework for Jailbreaking Aligned Large Language Models
Cheng, Siyang, Liu, Gaotian, Mei, Rui, Wang, Yilin, Zhang, Kejia, Wei, Kaishuo, Yu, Yuqi, Wen, Weiping, Wu, Xiaojie, Liu, Junhua
The rapid adoption of large language models (LLMs) has brought both transformative applications and new security risks, including jailbreak attacks that bypass alignment safeguards to elicit harmful outputs. Existing automated jailbreak generation approaches e.g. AutoDAN, suffer from limited mutation diversity, shallow fitness evaluation, and fragile keyword-based detection. To address these limitations, we propose ForgeDAN, a novel evolutionary framework for generating semantically coherent and highly effective adversarial prompts against aligned LLMs. First, ForgeDAN introduces multi-strategy textual perturbations across \textit{character, word, and sentence-level} operations to enhance attack diversity; then we employ interpretable semantic fitness evaluation based on a text similarity model to guide the evolutionary process toward semantically relevant and harmful outputs; finally, ForgeDAN integrates dual-dimensional jailbreak judgment, leveraging an LLM-based classifier to jointly assess model compliance and output harmfulness, thereby reducing false positives and improving detection effectiveness. Our evaluation demonstrates ForgeDAN achieves high jailbreaking success rates while maintaining naturalness and stealth, outperforming existing SOTA solutions.
Robust Defense Strategies for Multimodal Contrastive Learning: Efficient Fine-tuning Against Backdoor Attacks
Hossain, Md. Iqbal, Sajeeda, Afia, Perla, Neeresh Kumar, Shao, Ming
The advent of multimodal deep learning models, such as CLIP, has unlocked new frontiers in a wide range of applications, from image-text understanding to classification tasks. However, these models are not safe for adversarial attacks, particularly backdoor attacks, which can subtly manipulate model behavior. Moreover, existing defense methods typically involve training from scratch or fine-tuning using a large dataset without pinpointing the specific labels that are affected. In this study, we introduce an innovative strategy to enhance the robustness of multimodal contrastive learning models against such attacks. In particular, given a poisoned CLIP model, our approach can identify the backdoor trigger and pinpoint the victim samples and labels in an efficient manner. To that end, an image segmentation ``oracle'' is introduced as the supervisor for the output of the poisoned CLIP. We develop two algorithms to rectify the poisoned model: (1) differentiating between CLIP and Oracle's knowledge to identify potential triggers; (2) pinpointing affected labels and victim samples, and curating a compact fine-tuning dataset. With this knowledge, we are allowed to rectify the poisoned CLIP model to negate backdoor effects. Extensive experiments on visual recognition benchmarks demonstrate our strategy is effective in CLIP-based backdoor defense.
Mitigating Spurious Correlations in Patch-wise Tumor Classification on High-Resolution Multimodal Images
Asaad, Ihab, Shadaydeh, Maha, Denzler, Joachim
Patch-wise multi-label classification provides an efficient alternative to full pixel-wise segmentation on high-resolution images, particularly when the objective is to determine the presence or absence of target objects within a patch rather than their precise spatial extent. This formulation substantially reduces annotation cost, simplifies training, and allows flexible patch sizing aligned with the desired level of decision granularity. In this work, we focus on a special case, patch-wise binary classification, applied to the detection of a single class of interest (tumor) on high-resolution multimodal nonlinear microscopy images. We show that, although this simplified formulation enables efficient model development, it can introduce spurious correlations between patch composition and labels: tumor patches tend to contain larger tissue regions, whereas non-tumor patches often consist mostly of background with small tissue areas. We further quantify the bias in model predictions caused by this spurious correlation, and propose to use a debiasing strategy to mitigate its effect. Specifically, we apply GERNE, a debiasing method that can be adapted to maximize worst-group accuracy (WGA). Our results show an improvement in WGA by approximately 7% compared to ERM for two different thresholds used to binarize the spurious feature. This enhancement boosts model performance on critical minority cases, such as tumor patches with small tissues and non-tumor patches with large tissues, and underscores the importance of spurious correlation-aware learning in patch-wise classification problems.
Automated Construction of Medical Indicator Knowledge Graphs Using Retrieval Augmented Large Language Models
Wang, Zhengda, Shi, Daqian, Zhao, Jingyi, Diao, Xiaolei, Tang, Xiongfeng, Qin, Yanguo
Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling deep knowledge extraction and semantic reasoning from complex medical texts. However, effective clinical decision support requires knowledge in structured, interoperable formats. Knowledge graphs serve this role by integrating heterogeneous medical information into semantically consistent networks. Yet, current clinical knowledge graphs still depend heavily on manual curation and rule-based extraction, which is limited by the complexity and contextual ambiguity of medical guidelines and literature. To overcome these challenges, we propose an automated framework that combines retrieval-augmented generation (RAG) with LLMs to construct medical indicator knowledge graphs. The framework incorporates guideline-driven data acquisition, ontology-based schema design, and expert-in-the-loop validation to ensure scalability, accuracy, and clinical reliability. The resulting knowledge graphs can be integrated into intelligent diagnosis and question-answering systems, accelerating the development of AI-driven healthcare solutions.
AI Fairness Beyond Complete Demographics: Current Achievements and Future Directions
Wang, Zichong, Yin, Zhipeng, Yap, Roland H. C., Zhang, Wenbin
Fairness in artificial intelligence (AI) has become a growing concern due to discriminatory outcomes in AI-based decision-making systems. While various methods have been proposed to mitigate bias, most rely on complete demographic information, an assumption often impractical due to legal constraints and the risk of reinforcing discrimination. This survey examines fairness in AI when demographics are incomplete, addressing the gap between traditional approaches and real-world challenges. We introduce a novel taxonomy of fairness notions in this setting, clarifying their relationships and distinctions. Additionally, we summarize existing techniques that promote fairness beyond complete demographics and highlight open research questions to encourage further progress in the field.
Naga: Vedic Encoding for Deep State Space Models
Schaller, Melanie, Janssen, Nick, Rosenhahn, Bodo
This paper presents Naga, a deep State Space Model (SSM) encoding approach inspired by structural concepts from Vedic mathematics. The proposed method introduces a bidirectional representation for time series by jointly processing forward and time-reversed input sequences. These representations are then combined through an element-wise (Hadamard) interaction, resulting in a Vedic-inspired encoding that enhances the model's ability to capture temporal dependencies across distant time steps. We evaluate Naga on multiple long-term time series forecasting (LTSF) benchmarks, including ETTh1, ETTh2, ETTm1, ETTm2, Weather, Traffic, and ILI. The experimental results show that Naga outperforms 28 current state of the art models and demonstrates improved efficiency compared to existing deep SSM-based approaches. The findings suggest that incorporating structured, Vedic-inspired decomposition can provide an interpretable and computationally efficient alternative for long-range sequence modeling.
Applying Large Language Models to Characterize Public Narratives
Poole-Dayan, Elinor, Kessler, Daniel T, Chiou, Hannah, Hughes, Margaret, Lin, Emily S, Ganz, Marshall, Roy, Deb
Public Narratives (PNs) are key tools for leadership development and civic mobilization, yet their systematic analysis remains challenging due to their subjective interpretation and the high cost of expert annotation. In this work, we propose a novel computational framework that leverages large language models (LLMs) to automate the qualitative annotation of public narratives. Using a codebook we co-developed with subject-matter experts, we evaluate LLM performance against that of expert annotators. Our work reveals that LLMs can achieve near-human-expert performance, achieving an average F1 score of 0.80 across 8 narratives and 14 codes. We then extend our analysis to empirically explore how PN framework elements manifest across a larger dataset of 22 stories. Lastly, we extrapolate our analysis to a set of political speeches, establishing a novel lens in which to analyze political rhetoric in civic spaces. This study demonstrates the potential of LLM-assisted annotation for scalable narrative analysis and highlights key limitations and directions for future research in computational civic storytelling.
Aspect-Level Obfuscated Sentiment in Thai Financial Disclosures and Its Impact on Abnormal Returns
Rutherford, Attapol T., Chueykamhang, Sirisak, Bunditlurdruk, Thachaparn, Angsuwichitkul, Nanthicha
Understanding sentiment in financial documents is crucial for gaining insights into market behavior. These reports often contain obfuscated language designed to present a positive or neutral outlook, even when underlying conditions may be less favorable. This paper presents a novel approach using Aspect-Based Sentiment Analysis (ABSA) to decode obfuscated sentiment in Thai financial annual reports. We develop specific guidelines for annotating obfuscated sentiment in these texts and annotate more than one hundred financial reports. We then benchmark various text classification models on this annotated dataset, demonstrating strong performance in sentiment classification. Additionally, we conduct an event study to evaluate the real-world implications of our sentiment analysis on stock prices. Our results suggest that market reactions are selectively influenced by specific aspects within the reports. Our findings underscore the complexity of sentiment analysis in financial texts and highlight the importance of addressing obfuscated language to accurately assess market sentiment.