Deep learning has become increasingly popular in both supervised and unsupervised machine learning thanks to its outstanding empirical performance. However, because of their intrinsic complexity, most deep learning methods are largely treated as black box tools with little interpretability. Even though recent attempts have been made to facilitate the interpretability of deep neural networks (DNNs), existing methods are susceptible to noise and lack of robustness. Therefore, scientists are justifiably cautious about the reproducibility of the discoveries, which is often related to the interpretability of the underlying statistical models. In this paper, we describe a method to increase the interpretability and reproducibility of DNNs by incorporating the idea of feature selection with controlled error rate. By designing a new DNN architecture and integrating it with the recently proposed knockoffs framework, we perform feature selection with a controlled error rate, while maintaining high power. This new method, DeepPINK (Deep feature selection using Paired-Input Nonlinear Knockoffs), is applied to both simulated and real data sets to demonstrate its empirical utility.

Convolutional long short-term memory (LSTM) networks have been widely used for action/gesture recognition, and different attention mechanisms have also been embedded into the LSTM or the convolutional LSTM (ConvLSTM) networks. Based on the previous gesture recognition architectures which combine the three-dimensional convolution neural network (3DCNN) and ConvLSTM, this paper explores the effects of attention mechanism in ConvLSTM. Several variants of ConvLSTM are evaluated: (a) Removing the convolutional structures of the three gates in ConvLSTM, (b) Applying the attention mechanism on the input of ConvLSTM, (c) Reconstructing the input and (d) output gates respectively with the modified channel-wise attention mechanism. The evaluation results demonstrate that the spatial convolutions in the three gates scarcely contribute to the spatiotemporal feature fusion, and the attention mechanisms embedded into the input and output gates cannot improve the feature fusion. In other words, ConvLSTM mainly contributes to the temporal fusion along with the recurrent steps to learn the long-term spatiotemporal features, when taking as input the spatial or spatiotemporal features. On this basis, a new variant of LSTM is derived, in which the convolutional structures are only embedded into the input-to-state transition of LSTM. The code of the LSTM variants is publicly available.

Attention mechanism is effective in both focusing the deep learning models on relevant features and interpreting them. However, attentions may be unreliable since the networks that generate them are often trained in a weakly-supervised manner. To overcome this limitation, we introduce the notion of input-dependent uncertainty to the attention mechanism, such that it generates attention for each feature with varying degrees of noise based on the given input, to learn larger variance on instances it is uncertain about. We learn this Uncertainty-aware Attention (UA) mechanism using variational inference, and validate it on various risk prediction tasks from electronic health records on which our model significantly outperforms existing attention models. The analysis of the learned attentions shows that our model generates attentions that comply with clinicians' interpretation, and provide richer interpretation via learned variance. Further evaluation of both the accuracy of the uncertainty calibration and the prediction performance with I don't know'' decision show that UA yields networks with high reliability as well.

Time series classification using deep neural networks, such as convolutional neural networks (CNN), operate on the spectral decomposition of the time series computed using a preprocessing step. This step can include a large number of hyperparameters, such as window length, filter widths, and filter shapes, each with a range of possible values that must be chosen using time and data intensive cross-validation procedures. We propose the wavelet deconvolution (WD) layer as an efficient alternative to this preprocessing step that eliminates a significant number of hyperparameters. The WD layer uses wavelet functions with adjustable scale parameters to learn the spectral decomposition directly from the signal. Using backpropagation, we show the scale parameters can be optimized with gradient descent. Furthermore, the WD layer adds interpretability to the learned time series classifier by exploiting the properties of the wavelet transform.

The large communication overhead has imposed a bottleneck on the performance of distributed Stochastic Gradient Descent (SGD) for training deep neural networks. Previous works have demonstrated the potential of using gradient sparsification and quantization to reduce the communication cost. However, there is still a lack of understanding about how sparse and quantized communication affects the convergence rate of the training algorithm. In this paper, we study the convergence rate of distributed SGD for non-convex optimization with two communication reducing strategies: sparse parameter averaging and gradient quantization. We show that $O(1/\sqrt{MK})$ convergence rate can be achieved if the sparsification and quantization hyperparameters are configured properly. We also propose a strategy called periodic quantized averaging (PQASGD) that further reduces the communication cost while preserving the $O(1/\sqrt{MK})$ convergence rate. Our evaluation validates our theoretical results and shows that our PQASGD can converge as fast as full-communication SGD with only $3\%-5\%$ communication data size.

Recurrent neural networks (RNNs) such as long short-term memory and gated recurrent units are pivotal building blocks across a broad spectrum of sequence modeling problems. This paper proposes a recurrently controlled recurrent network (RCRN) for expressive and powerful sequence encoding. More concretely, the key idea behind our approach is to learn the recurrent gating functions using recurrent networks. Our architecture is split into two components - a controller cell and a listener cell whereby the recurrent controller actively influences the compositionality of the listener cell. We conduct extensive experiments on a myriad of tasks in the NLP domain such as sentiment analysis (SST, IMDb, Amazon reviews, etc.), question classification (TREC), entailment classification (SNLI, SciTail), answer selection (WikiQA, TrecQA) and reading comprehension (NarrativeQA). Across all 26 datasets, our results demonstrate that RCRN not only consistently outperforms BiLSTMs but also stacked BiLSTMs, suggesting that our controller architecture might be a suitable replacement for the widely adopted stacked architecture. Additionally, RCRN achieves state-of-the-art results on several well-established datasets.

Collecting the large datasets needed to train deep neural networks can be very difficult, particularly for the many applications for which sharing and pooling data is complicated by practical, ethical, or legal concerns. However, it may be the case that derivative datasets or predictive models developed within individual sites can be shared and combined with fewer restrictions. Training on distributed data and combining the resulting networks is often viewed as continual learning, but these methods require networks to be trained sequentially. In this paper, we introduce distributed weight consolidation (DWC), a continual learning method to consolidate the weights of separate neural networks, each trained on an independent dataset. We evaluated DWC with a brain segmentation case study, where we consolidated dilated convolutional neural networks trained on independent structural magnetic resonance imaging (sMRI) datasets from different sites. We found that DWC led to increased performance on test sets from the different sites, while maintaining generalization performance for a very large and completely independent multi-site dataset, compared to an ensemble baseline.

We compare the robustness of humans and current convolutional deep neural networks (DNNs) on object recognition under twelve different types of image degradations. First, using three well known DNNs (ResNet-152, VGG-19, GoogLeNet) we find the human visual system to be more robust to nearly all of the tested image manipulations, and we observe progressively diverging classification error-patterns between humans and DNNs when the signal gets weaker. Secondly, we show that DNNs trained directly on distorted images consistently surpass human performance on the exact distortion types they were trained on, yet they display extremely poor generalisation abilities when tested on other distortion types. For example, training on salt-and-pepper noise does not imply robustness on uniform white noise and vice versa. Thus, changes in the noise distribution between training and testing constitutes a crucial challenge to deep learning vision systems that can be systematically addressed in a lifelong machine learning approach. Our new dataset consisting of 83K carefully measured human psychophysical trials provide a useful reference for lifelong robustness against image degradations set by the human visual system.

Deep neural networks, and in particular recurrent networks, are promising candidates to control autonomous agents that interact in real-time with the physical world. However, this requires a seamless integration of temporal features into the network's architecture. For the training of and inference with recurrent neural networks, they are usually rolled out over time, and different rollouts exist.

Stochastic regularisation is an important weapon in the arsenal of a deep learning practitioner. However, despite recent theoretical advances, our understanding of how noise influences signal propagation in deep neural networks remains limited. By extending recent work based on mean field theory, we develop a new framework for signal propagation in stochastic regularised neural networks. Our \textit{noisy signal propagation} theory can incorporate several common noise distributions, including additive and multiplicative Gaussian noise as well as dropout. We use this framework to investigate initialisation strategies for noisy ReLU networks. We show that no critical initialisation strategy exists using additive noise, with signal propagation exploding regardless of the selected noise distribution. For multiplicative noise (e.g.\ dropout), we identify alternative critical initialisation strategies that depend on the second moment of the noise distribution. Simulations and experiments on real-world data confirm that our proposed initialisation is able to stably propagate signals in deep networks, while using an initialisation disregarding noise fails to do so.