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 Deep Learning


Bigram Subnetworks: Mapping to Next Tokens in Transformer Language Models

Neural Information Processing Systems

In Transformer language models, activation vectors transform from current token embeddings to next token predictions as they pass through the model. To isolate a minimal form of this transformation, we identify language model subnetworks that make bigram predictions, naive next token predictions based only on the current token. We find that bigram subnetworks can be found in fully trained language models up to 1B parameters, and these subnetworks are critical for model performance even when they consist of less than 0.2% of model parameters. Bigram subnetworks are concentrated in the first Transformer MLP layer, and they overlap significantly with subnetworks trained to optimally prune a given model. Mechanistically, the bigram subnetworks often recreate a pattern from the full models where the first layer induces a sharp change that aligns activations with next token predictions rather than current token representations. Our results demonstrate that bigram subnetworks comprise a minimal subset of parameters that are both necessary and sufficient for basic next token predictions in language models, and they help drive the transformation from current to next token activations in the residual stream. These subnetworks can lay a foundation for studying more complex language model circuits by building up from a minimal circuit.1


InvisibleInk: High-Utility and Low-Cost Text Generation with Differential Privacy

Neural Information Processing Systems

As major progress in LLM-based long-form text generation enables paradigms such as retrieval-augmented generation (RAG) and inference-time scaling, safely incorporating private information into the generation remains a critical open question.


Flexible Realignment of Language Models

Neural Information Processing Systems

Realignment becomes necessary when a language model (LM) fails to meet expected performance. We propose a flexible realignment framework that supports quantitative control of alignment degree during training and inference. This framework incorporates Training-time Realignment (TrRa), which efficiently realigns the reference model by leveraging the controllable fusion of logits from both the reference and already aligned models. For example, TrRa reduces token usage by 54.63% on DeepSeek-R1-Distill-Qwen-1.5B without any performance degradation, outperforming DeepScaleR-1.5B's


LLMGenerated Persona is a Promise with a Catch

Neural Information Processing Systems

The use of large language models (LLMs) to simulate human behavior has gained significant attention, particularly through personas that approximate individual characteristics. Persona-based simulations hold promise for transforming disciplines that rely on population-level feedback, including social science, economic analysis, marketing research, and business operations. Traditional methods to collect realistic persona data face significant challenges: they are prohibitively expensive and logistically challenging due to privacy constraints, and often fail to capture multi-dimensional attributes, particularly subjective qualities. Consequently, synthetic persona generation with LLMs offers a scalable, cost-effective alternative. However, current approaches rely on ad hoc and heuristic generation techniques that do not guarantee methodological rigor or simulation precision, resulting in systematic biases in downstream tasks. Through extensive large-scale experiments including presidential election forecasts and general opinion surveys of the U.S. population, we reveal that these biases can lead to significant deviations from real-world outcomes. Based on the experimental results, this position paper argues that a rigorous and systematic science of persona generation is needed to ensure the reliability of LLM-driven simulations of human behavior. We call for not only methodological innovations and empirical foundations but also interdisciplinary organizational and institutional support for the development of this field. To support further research and development in this area, we have opensourced approximately one million generated personas, available for public access and analysis at Tianyi-Lab/Personas.


FAN Fourier Analysis Networks

Neural Information Processing Systems

Despite the remarkable successes of general-purpose neural networks, such as MLPs and Transformers, we find that they exhibit notable shortcomings in modeling and reasoning about periodic phenomena, achieving only marginal performance within the training domain and failing to generalize effectively to out-of-domain (OOD) scenarios. Periodicity is ubiquitous throughout nature and science. Therefore, neural networks should be equipped with the essential ability to model and handle periodicity. In this work, we propose FAN, a novel neural network that effectively addresses periodicity modeling challenges while offering broad applicability similar to MLP with fewer parameters and FLOPs. Periodicity is naturally integrated into FAN's structure and computational processes by introducing the Fourier Principle. Unlike existing Fourier-based networks, which possess particular periodicity modeling abilities but face challenges in scaling to deeper networks and are typically designed for specific tasks, our approach overcomes this challenge to enable scaling to large-scale models and maintains the capability to be applied to more types of tasks. Through extensive experiments, we demonstrate the superiority of FAN in periodicity modeling tasks and the effectiveness and generalizability of FAN across a range of real-world tasks. Moreover, we reveal that compared to existing Fourier-based networks, FAN accommodates both periodicity modeling and general-purpose modeling well.


Prompting as Scientific Inquiry

Neural Information Processing Systems

Prompting is the primary method by which we study and control large language models. It is also one of the most powerful: nearly every major capability attributed to LLMs--few-shot learning, chain-of-thought, constitutional AI--was first unlocked through prompting. Yet prompting is rarely treated as science and is frequently frowned upon as alchemy. We argue that this is a category error. If we treat LLMs as a new kind of organism--complex, opaque, and trained rather than programmed--then prompting is not a workaround.


Region Recognition Reasoning and Refinement for Enhanced Chain of Thought

Neural Information Processing Systems

Recently, reasoning-based MLLMs have achieved a degree of success in generating long-form textual reasoning chains. However, they still struggle with complex tasks that necessitate dynamic and iterative focusing on and revisiting of visual regions to achieve precise grounding of textual reasoning in visual evidence. We introduce VLM-R3 (Visual Language Model with Region Recognition and Reasoning), a framework that equips an MLLM with the ability to (i) decide when additional visual evidence is needed, (ii) determine where to ground within the image, and (iii) seamlessly weave the relevant sub-image content back into an interleaved chain-of-thought. The core of our method is Region-Conditioned Reinforcement Policy Optimization (R-GRPO), a training paradigm that rewards the model for selecting informative regions, formulating appropriate transformations (e.g.


Set-LLM: APermutation-Invariant LLM

Neural Information Processing Systems

While large language models (LLMs) demonstrate impressive capabilities across numerous applications, their robustness remains a critical concern. This paper is motivated by a specific vulnerability: the order sensitivity of LLMs. This vulnerability manifests itself as the order bias observed when LLMs decide between possible options (for example, a preference for the first option) and the tendency of LLMs to provide different answers when options are reordered. The use cases for this scenario extend beyond the classical case of multiple-choice question answering to the use of LLMs for multidocument tasks and as automated evaluators in AI pipelines. We introduce Set-LLM, a novel architectural adaptation for pretrained LLMs that enables the processing of mixed set-text inputs with permutation invariance guarantees. The adaptations involve a new attention mask and new positional encodings specifically designed for sets. We provide a theoretical proof of invariance and demonstrate through experiments that Set-LLM can be trained effectively, achieving comparable or improved performance and maintaining the runtime of the original model, while altogether eliminating order sensitivity.


Accurate and Efficient Low-Rank Model Merging in Core Space

Neural Information Processing Systems

In this paper, we address the challenges associated with merging low-rank adaptations of large neural networks. With the rise of parameter-efficient adaptation techniques, such as Low-Rank Adaptation (LoRA), model fine-tuning has become more accessible. While fine-tuning models with LoRA is highly efficient, existing merging methods often sacrifice this efficiency by merging fully-sized weight matrices. We propose the Core Space merging framework, which enables the merging of LoRA-adapted models within a common alignment basis, thereby preserving the efficiency of low-rank adaptation while substantially improving accuracy across tasks. We further provide a formal proof that projection into Core Space ensures no loss of information and provide a complexity analysis showing the efficiency gains. Extensive empirical results demonstrate that Core Space significantly improves existing merging techniques and achieves state-of-the-art results on both vision and language tasks while utilizing a fraction of the computational resources.


Uncertainty Estimation on Graphs with Structure Informed Stochastic Partial Differential Equations

Neural Information Processing Systems

Graph Neural Networks (GNNs) have achieved impressive results across diverse network modeling tasks, but accurately estimating uncertainty on graphs remains difficult--especially under distributional shifts. Unlike traditional uncertainty estimation, graph-based uncertainty must account for randomness arising from both the graph's structure and its label distribution, which adds complexity. In this paper, making an analogy between the evolution of a stochastic partial differential equation (SPDE) driven by Matérn Gaussian Process and message passing using GNN layers, we present a principled way to design a novel message passing scheme that incorporates spatial-temporal noises motivated by the Gaussian Process approach to SPDE. Our method simultaneously captures uncertainty across space and time and allows explicit control over the covariance kernel's smoothness, thereby enhancing uncertainty estimates on graphs with both low and high label informativeness. Our extensive experiments on Out-of-Distribution (OOD) detection on graph datasets with varying label informativeness demonstrate the soundness and superiority of our model to existing approaches.