We present a Model Uncertainty-aware Differentiable ARchiTecture Search ($\mu$DARTS) that optimizes neural networks to simultaneously achieve high accuracy and low uncertainty. We introduce concrete dropout within DARTS cells and include a Monte-Carlo regularizer within the training loss to optimize the concrete dropout probabilities. A predictive variance term is introduced in the validation loss to enable searching for architecture with minimal model uncertainty. The experiments on CIFAR10, CIFAR100, SVHN, and ImageNet verify the effectiveness of $\mu$DARTS in improving accuracy and reducing uncertainty compared to existing DARTS methods. Moreover, the final architecture obtained from $\mu$DARTS shows higher robustness to noise at the input image and model parameters compared to the architecture obtained from existing DARTS methods.

Deep learning methods are the de-facto solutions to a multitude of medical image analysis tasks. Cardiac MRI segmentation is one such application which, like many others, requires a large number of annotated data so a trained network can generalize well. Unfortunately, the process of having a large number of manually curated images by medical experts is both slow and utterly expensive. In this paper, we set out to explore whether expert knowledge is a strict requirement for the creation of annotated datasets that machine learning can successfully train on. To do so, we gauged the performance of three segmentation models, namely U-Net, Attention U-Net, and ENet, trained with different loss functions on expert and non-expert groundtruth for cardiac cine-MRI segmentation. Evaluation was done with classic segmentation metrics (Dice index and Hausdorff distance) as well as clinical measurements, such as the ventricular ejection fractions and the myocardial mass. Results reveal that generalization performances of a segmentation neural network trained on non-expert groundtruth data is, to all practical purposes, as good as on expert groundtruth data, in particular when the non-expert gets a decent level of training, highlighting an opportunity for the efficient and cheap creation of annotations for cardiac datasets.

We present a novel global compression framework for deep neural networks that automatically analyzes each layer to identify the optimal per-layer compression ratio, while simultaneously achieving the desired overall compression. Our algorithm hinges on the idea of compressing each convolutional (or fully-connected) layer by slicing its channels into multiple groups and decomposing each group via low-rank decomposition. At the core of our algorithm is the derivation of layer-wise error bounds from the Eckart Young Mirsky theorem. We then leverage these bounds to frame the compression problem as an optimization problem where we wish to minimize the maximum compression error across layers and propose an efficient algorithm towards a solution. Our experiments indicate that our method outperforms existing low-rank compression approaches across a wide range of networks and data sets. We believe that our results open up new avenues for future research into the global performance-size trade-offs of modern neural networks. Our code is available at https://github.com/lucaslie/torchprune.

Monitoring bridge health using vibrations of drive-by vehicles has various benefits, such as no need for directly installing and maintaining sensors on the bridge. However, many of the existing drive-by monitoring approaches are based on supervised learning models that require labeled data from every bridge of interest, which is expensive and time-consuming, if not impossible, to obtain. To this end, we introduce a new framework that transfers the model learned from one bridge to diagnose damage in another bridge without any labels from the target bridge. Our framework trains a hierarchical neural network model in an adversarial way to extract task-shared and task-specific features that are informative to multiple diagnostic tasks and invariant across multiple bridges. We evaluate our framework on experimental data collected from 2 bridges and 3 vehicles. We achieve accuracies of 95% for damage detection, 93% for localization, and up to 72% for quantification, which are ~2 times improvements from baseline methods.

MicroRNAs (miRNAs) play pivotal roles in gene expression regulation by binding to target sites of messenger RNAs (mRNAs). While identifying functional targets of miRNAs is of utmost importance, their prediction remains a great challenge. Previous computational algorithms have major limitations. They use conservative candidate target site (CTS) selection criteria mainly focusing on canonical site types, rely on laborious and time-consuming manual feature extraction, and do not fully capitalize on the information underlying miRNA-CTS interactions. In this paper, we introduce TargetNet, a novel deep learning-based algorithm for functional miRNA target prediction. To address the limitations of previous approaches, TargetNet has three key components: (1) relaxed CTS selection criteria accommodating irregularities in the seed region, (2) a novel miRNA-CTS sequence encoding scheme incorporating extended seed region alignments, and (3) a deep residual network-based prediction model. The proposed model was trained with miRNA-CTS pair datasets and evaluated with miRNA-mRNA pair datasets. TargetNet advances the previous state-of-the-art algorithms used in functional miRNA target classification. Furthermore, it demonstrates great potential for distinguishing high-functional miRNA targets.

Irregularly sampled time series commonly occur in several domains where they present a significant challenge to standard deep learning models. In this paper, we propose a new deep learning framework for probabilistic interpolation of irregularly sampled time series that we call the Heteroscedastic Temporal Variational Autoencoder (HeTVAE). HeTVAE includes a novel input layer to encode information about input observation sparsity, a temporal VAE architecture to propagate uncertainty due to input sparsity, and a heteroscedastic output layer to enable variable uncertainty in output interpolations. Our results show that the proposed architecture is better able to reflect variable uncertainty through time due to sparse and irregular sampling than a range of baseline and traditional models, as well as recently proposed deep latent variable models that use homoscedastic output layers.

Abstract--Language instruction plays an essential role in the natural language grounded navigation tasks. However, navigators trained with limited human-annotated instructions may have difficulties in accurately capturing key information from the complicated instruction at different timesteps, leading to poor navigation performance. In this paper, we exploit to train a more robust navigator which is capable of dynamically extracting crucial factors from the long instruction, by using an adversarial attacking paradigm. Specifically, we propose a Dynamic Reinforced Instruction Attacker (DR-Attacker), which learns to mislead the navigator to move to the wrong target by destroying the most instructive information in instructions at different timesteps. By formulating the perturbation generation as a Markov Decision Process, DR-Attacker is optimized by the reinforcement learning algorithm to generate perturbed instructions sequentially during the navigation, according to a learnable attack score. Then, the perturbed instructions, which serve as hard samples, are used for improving the robustness of the navigator with an effective adversarial training strategy and an auxiliary self-supervised reasoning task. Experimental results on both Vision-and-Language Navigation (VLN) and Navigation from Dialog History (NDH) tasks show the superiority of our proposed method over state-of-the-art methods. Moreover, the visualization analysis shows the effectiveness of the proposed DR-Attacker, which can successfully attack crucial information in the instructions at different timesteps.

Explainability of deep neural networks is one of the most challenging and interesting problems in the field. In this study, we investigate the topic focusing on the interpretability of deep learning-based registration methods. In particular, with the appropriate model architecture and using a simple linear projection, we decompose the encoding space, generating a new basis, and we empirically show that this basis captures various decomposed anatomically aware geometrical transformations. We perform experiments using two different datasets focusing on lungs and hippocampus MRI. We show that such an approach can decompose the highly convoluted latent spaces of registration pipelines in an orthogonal space with several interesting properties. We hope that this work could shed some light on a better understanding of deep learning-based registration methods.

Learning structured representations of visual scenes is currently a major bottleneck to bridging perception with reasoning. While there has been exciting progress with slot-based models, which learn to segment scenes into sets of objects, learning configurational properties of entire groups of objects is still under-explored. To address this problem, we introduce Constellation, a network that learns relational abstractions of static visual scenes, and generalises these abstractions over sensory particularities, thus offering a potential basis for abstract relational reasoning. We further show that this basis, along with language association, provides a means to imagine sensory content in new ways. This work is a first step in the explicit representation of visual relationships and using them for complex cognitive procedures.

Malware detection and analysis are active research subjects in cybersecurity over the last years. Indeed, the development of obfuscation techniques, as packing, for example, requires special attention to detect recent variants of malware. The usual detection methods do not necessarily provide tools to interpret the results. Therefore, we propose a model based on the transformation of binary files into grayscale image, which achieves an accuracy rate of 88%. Furthermore, the proposed model can determine if a sample is packed or encrypted with a precision of 85%. It allows us to analyze results and act appropriately. Also, by applying attention mechanisms on detection models, we have the possibility to identify which part of the files looks suspicious. This kind of tool should be very useful for data analysts, it compensates for the lack of interpretability of the common detection models, and it can help to understand why some malicious files are undetected.