Deep Learning
Small Lesion Segmentation in Brain MRIs with Subpixel Embedding
Wong, Alex, Chen, Allison, Wu, Yangchao, Cicek, Safa, Tiard, Alexandre, Hong, Byung-Woo, Soatto, Stefano
We present a method to segment MRI scans of the human brain into ischemic stroke lesion and normal tissues. We propose a neural network architecture in the form of a standard encoder-decoder where predictions are guided by a spatial expansion embedding network. Our embedding network learns features that can resolve detailed structures in the brain without the need for high-resolution training images, which are often unavailable and expensive to acquire. Alternatively, the encoder-decoder learns global structures by means of striding and max pooling. Our embedding network complements the encoder-decoder architecture by guiding the decoder with fine-grained details lost to spatial downsampling during the encoder stage. Unlike previous works, our decoder outputs at 2 times the input resolution, where a single pixel in the input resolution is predicted by four neighboring subpixels in our output. To obtain the output at the original scale, we propose a learnable downsampler (as opposed to hand-crafted ones e.g. bilinear) that combines subpixel predictions. Our approach improves the baseline architecture by approximately 11.7% and achieves the state of the art on the ATLAS public benchmark dataset with a smaller memory footprint and faster runtime than the best competing method. Our source code has been made available at: https://github.com/alexklwong/subpixel-embedding-segmentation.
Asymmetric 3D Context Fusion for Universal Lesion Detection
Yang, Jiancheng, He, Yi, Kuang, Kaiming, Lin, Zudi, Pfister, Hanspeter, Ni, Bingbing
Modeling 3D context is essential for high-performance 3D medical image analysis. Although 2D networks benefit from large-scale 2D supervised pretraining, it is weak in capturing 3D context. 3D networks are strong in 3D context yet lack supervised pretraining. As an emerging technique, \emph{3D context fusion operator}, which enables conversion from 2D pretrained networks, leverages the advantages of both and has achieved great success. Existing 3D context fusion operators are designed to be spatially symmetric, i.e., performing identical operations on each 2D slice like convolutions. However, these operators are not truly equivariant to translation, especially when only a few 3D slices are used as inputs. In this paper, we propose a novel asymmetric 3D context fusion operator (A3D), which uses different weights to fuse 3D context from different 2D slices. Notably, A3D is NOT translation-equivariant while it significantly outperforms existing symmetric context fusion operators without introducing large computational overhead. We validate the effectiveness of the proposed method by extensive experiments on DeepLesion benchmark, a large-scale public dataset for universal lesion detection from computed tomography (CT). The proposed A3D consistently outperforms symmetric context fusion operators by considerable margins, and establishes a new \emph{state of the art} on DeepLesion. To facilitate open research, our code and model in PyTorch are available at https://github.com/M3DV/AlignShift.
Primer: Searching for Efficient Transformers for Language Modeling
So, David R., Mańke, Wojciech, Liu, Hanxiao, Dai, Zihang, Shazeer, Noam, Le, Quoc V.
Large Transformer models have been central to recent advances in natural language processing. The training and inference costs of these models, however, have grown rapidly and become prohibitively expensive. Here we aim to reduce the costs of Transformers by searching for a more efficient variant. Compared to previous approaches, our search is performed at a lower level, over the primitives that define a Transformer TensorFlow program. We identify an architecture, named Primer, that has a smaller training cost than the original Transformer and other variants for auto-regressive language modeling. Primer's improvements can be mostly attributed to two simple modifications: squaring ReLU activations and adding a depthwise convolution layer after each Q, K, and V projection in self-attention. Experiments show Primer's gains over Transformer increase as compute scale grows and follow a power law with respect to quality at optimal model sizes. We also verify empirically that Primer can be dropped into different codebases to significantly speed up training without additional tuning. For example, at a 500M parameter size, Primer improves the original T5 architecture on C4 auto-regressive language modeling, reducing the training cost by 4X. Furthermore, the reduced training cost means Primer needs much less compute to reach a target one-shot performance. For instance, in a 1.9B parameter configuration similar to GPT-3 XL, Primer uses 1/3 of the training compute to achieve the same one-shot performance as Transformer. We open source our models and several comparisons in T5 to help with reproducibility.
Efficient State Representation Learning for Dynamic Robotic Scenarios
Chen, Zhaorun, Gong, Liang, Sun, Te, Chen, Binhao, Xie, Shenghan, Filliat, David, Díaz-Rodríguez, Natalia
While the rapid progress of deep learning fuels end-to-end reinforcement learning (RL), direct application, especially in high-dimensional space like robotic scenarios still suffers from high sample efficiency. Therefore State Representation Learning (SRL) is proposed to specifically learn to encode task-relevant features from complex sensory data into low-dimensional states. However, the pervasive implementation of SRL is usually conducted by a decoupling strategy in which the observation-state mapping is learned separately, which is prone to over-fit. To handle such problem, we present a new algorithm called Policy Optimization via Abstract Representation which integrates SRL into the original RL scale. Firstly, We engage RL loss to assist in updating SRL model so that the states can evolve to meet the demand of reinforcement learning and maintain a good physical interpretation. Secondly, we introduce a dynamic parameter adjustment mechanism so that both models can efficiently adapt to each other. Thirdly, we introduce a new prior called domain resemblance to leverage expert demonstration to train the SRL model. Finally, we provide a real-time access by state graph to monitor the course of learning. Results show that our algorithm outperforms the PPO baselines and decoupling strategies in terms of sample efficiency and final rewards. Thus our model can efficiently deal with tasks in high dimensions and facilitate training real-life robots directly from scratch.
Grounding Natural Language Instructions: Can Large Language Models Capture Spatial Information?
Rozanova, Julia, Ferreira, Deborah, Dubba, Krishna, Cheng, Weiwei, Zhang, Dell, Freitas, Andre
Models designed for intelligent process automation are required to be capable of grounding user interface elements. This task of interface element grounding is centred on linking instructions in natural language to their target referents. Even though BERT and similar pre-trained language models have excelled in several NLP tasks, their use has not been widely explored for the UI grounding domain. This work concentrates on testing and probing the grounding abilities of three different transformer-based models: BERT, RoBERTa and LayoutLM. Our primary focus is on these models' spatial reasoning skills, given their importance in this domain. We observe that LayoutLM has a promising advantage for applications in this domain, even though it was created for a different original purpose (representing scanned documents): the learned spatial features appear to be transferable to the UI grounding setting, especially as they demonstrate the ability to discriminate between target directions in natural language instructions.
Hierarchy-Aware T5 with Path-Adaptive Mask Mechanism for Hierarchical Text Classification
Huang, Wei, Liu, Chen, Zhao, Yihua, Yang, Xinyun, Pan, Zhaoming, Zhang, Zhimin, Liu, Guiquan
Hierarchical Text Classification (HTC), which aims to predict text labels organized in hierarchical space, is a significant task lacking in investigation in natural language processing. Existing methods usually encode the entire hierarchical structure and fail to construct a robust label-dependent model, making it hard to make accurate predictions on sparse lower-level labels and achieving low Macro-F1. In this paper, we propose a novel PAMM-HiA-T5 model for HTC: a hierarchy-aware T5 model with path-adaptive mask mechanism that not only builds the knowledge of upper-level labels into low-level ones but also introduces path dependency information in label prediction. Specifically, we generate a multi-level sequential label structure to exploit hierarchical dependency across different levels with Breadth-First Search (BFS) and T5 model. To further improve label dependency prediction within each path, we then propose an original path-adaptive mask mechanism (PAMM) to identify the label's path information, eliminating sources of noises from other paths. Comprehensive experiments on three benchmark datasets show that our novel PAMM-HiA-T5 model greatly outperforms all state-of-the-art HTC approaches especially in Macro-F1. The ablation studies show that the improvements mainly come from our innovative approach instead of T5.
Conversational Multi-Hop Reasoning with Neural Commonsense Knowledge and Symbolic Logic Rules
Arabshahi, Forough, Lee, Jennifer, Bosselut, Antoine, Choi, Yejin, Mitchell, Tom
One of the challenges faced by conversational agents is their inability to identify unstated presumptions of their users' commands, a task trivial for humans due to their common sense. In this paper, we propose a zero-shot commonsense reasoning system for conversational agents in an attempt to achieve this. Our reasoner uncovers unstated presumptions from user commands satisfying a general template of if-(state), then-(action), because-(goal). Our reasoner uses a state-of-the-art transformer-based generative commonsense knowledge base (KB) as its source of background knowledge for reasoning. We propose a novel and iterative knowledge query mechanism to extract multi-hop reasoning chains from the neural KB which uses symbolic logic rules to significantly reduce the search space. Similar to any KBs gathered to date, our commonsense KB is prone to missing knowledge. Therefore, we propose to conversationally elicit the missing knowledge from human users with our novel dynamic question generation strategy, which generates and presents contextualized queries to human users. We evaluate the model with a user study with human users that achieves a 35% higher success rate compared to SOTA.
Integrating Deep Reinforcement and Supervised Learning to Expedite Indoor Mapping
Zwecher, Elchanan, Iceland, Eran, Levy, Sean R., Hayoun, Shmuel Y., Gal, Oren, Barel, Ariel
The challenge of mapping indoor environments is addressed. Typical heuristic algorithms for solving the motion planning problem are frontier-based methods, that are especially effective when the environment is completely unknown. However, in cases where prior statistical data on the environment's architectonic features is available, such algorithms can be far from optimal. Furthermore, their calculation time may increase substantially as more areas are exposed. In this paper we propose two means by which to overcome these shortcomings. One is the use of deep reinforcement learning to train the motion planner. The second is the inclusion of a pre-trained generative deep neural network, acting as a map predictor. Each one helps to improve the decision making through use of the learned structural statistics of the environment, and both, being realized as neural networks, ensure a constant calculation time. We show that combining the two methods can shorten the mapping time, compared to frontier-based motion planning, by up to 75%.
Carl-Lead: Lidar-based End-to-End Autonomous Driving with Contrastive Deep Reinforcement Learning
Cai, Peide, Wang, Sukai, Wang, Hengli, Liu, Ming
Autonomous driving in urban crowds at unregulated intersections is challenging, where dynamic occlusions and uncertain behaviors of other vehicles should be carefully considered. Traditional methods are heuristic and based on hand-engineered rules and parameters, but scale poorly in new situations. Therefore, they require high labor cost to design and maintain rules in all foreseeable scenarios. Recently, deep reinforcement learning (DRL) has shown promising results in urban driving scenarios. However, DRL is known to be sample inefficient, and most previous works assume perfect observations such as ground-truth locations and motions of vehicles without considering noises and occlusions, which might be a too strong assumption for policy deployment. In this work, we use DRL to train lidar-based end-to-end driving policies that naturally consider imperfect partial observations. We further use unsupervised contrastive representation learning as an auxiliary task to improve the sample efficiency. The comparative evaluation results reveal that our method achieves higher success rates than the state-of-the-art (SOTA) lidar-based end-to-end driving network, better trades off safety and efficiency than the carefully tuned rule-based method, and generalizes better to new scenarios than the baselines. Demo videos are available at https://caipeide.github.io/carl-lead/.
Cross Modification Attention Based Deliberation Model for Image Captioning
Lian, Zheng, Zhang, Yanan, Li, Haichang, Wang, Rui, Hu, Xiaohui
The conventional encoder-decoder framework for image captioning generally adopts a single-pass decoding process, which predicts the target descriptive sentence word by word in temporal order. Despite the great success of this framework, it still suffers from two serious disadvantages. Firstly, it is unable to correct the mistakes in the predicted words, which may mislead the subsequent prediction and result in error accumulation problem. Secondly, such a framework can only leverage the already generated words but not the possible future words, and thus lacks the ability of global planning on linguistic information. To overcome these limitations, we explore a universal two-pass decoding framework, where a single-pass decoding based model serving as the Drafting Model first generates a draft caption according to an input image, and a Deliberation Model then performs the polishing process to refine the draft caption to a better image description. Furthermore, inspired from the complementarity between different modalities, we propose a novel Cross Modification Attention (CMA) module to enhance the semantic expression of the image features and filter out error information from the draft captions. We integrate CMA with the decoder of our Deliberation Model and name it as Cross Modification Attention based Deliberation Model (CMA-DM). We train our proposed framework by jointly optimizing all trainable components from scratch with a trade-off coefficient. Experiments on MS COCO dataset demonstrate that our approach obtains significant improvements over single-pass decoding baselines and achieves competitive performances compared with other state-of-the-art two-pass decoding based methods.