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 Deep Learning


TestRank: Bringing Order into Unlabeled Test Instances for Deep Learning Tasks

Neural Information Processing Systems

Deep learning (DL) systems are notoriously difficult to test and debug due to the lack of correctness proof and the huge test input space to cover. Given the ubiquitous unlabeled test data and high labeling cost, in this paper, we propose a novel test prioritization technique, namely TestRank, which aims at revealing more model failures with less labeling effort. TestRank brings order into the unlabeled test data according to their likelihood of being a failure, i.e., their failure-revealing capabilities.


Modern Hopfield Networks and Attention for Immune Repertoire Classification

Neural Information Processing Systems

A central mechanism in machine learning is to identify, store, and recognize patterns. How to learn, access, and retrieve such patterns is crucial in Hopfield networks and the more recent transformer architectures. We show that the attention mechanism of transformer architectures is actually the update rule of modern Hopfield networks that can store exponentially many patterns. We exploit this high storage capacity of modern Hopfield networks to solve a challenging multiple instance learning (MIL) problem in computational biology: immune repertoire classification. In immune repertoire classification, a vast number of immune receptors are used to predict the immune status of an individual. This constitutes a MIL problem with an unprecedentedly massive number of instances, two orders of magnitude larger than currently considered problems, and with an extremely low witness rate. Accurate and interpretable machine learning methods solving this problem could pave the way towards new vaccines and therapies, which is currently a very relevant research topic intensified by the COVID-19 crisis.


Cockpit: A Practical Debugging Tool for the Training of Deep Neural Networks

Neural Information Processing Systems

When engineers train deep learning models, they are very much flying blind. Commonly used methods for real-time training diagnostics, such as monitoring the train/test loss, are limited. Assessing a network's training process solely through these performance indicators is akin to debugging software without access to internal states through a debugger. To address this, we present Cockpit, a collection of instruments that enable a closer look into the inner workings of a learning machine, and a more informative and meaningful status report for practitioners.


Gaussian Kernel Mixture Network for Single Image Defocus Deblurring

Neural Information Processing Systems

Defocus blur is one kind of blur effects often seen in images, which is challenging to remove due to its spatially variant amount. This paper presents an end-to-end deep learning approach for removing defocus blur from a single image, so as to have an all-in-focus image for consequent vision tasks. First, a pixel-wise Gaussian kernel mixture (GKM) model is proposed for representing spatially variant defocus blur kernels in an efficient linear parametric form, with higher accuracy than existing models. Then, a deep neural network called GKMNet is developed by unrolling a fixed-point iteration of the GKM-based deblurring. The GKMNet is built on a lightweight scale-recurrent architecture, with a scale-recurrent attention module for estimating the mixing coefficients in GKM for defocus deblurring. Extensive experiments show that the GKMNet not only noticeably outperforms existing defocus deblurring methods, but also has its advantages in terms of model complexity and computational efficiency.


Improved Variational Bayesian Phylogenetic Inference with Normalizing Flows

Neural Information Processing Systems

Variational Bayesian phylogenetic inference (VBPI) provides a promising general variational framework for efficient estimation of phylogenetic posteriors. However, the current diagonal Lognormal branch length approximation would significantly restrict the quality of the approximating distributions. In this paper, we propose a new type of VBPI, VBPI-NF, as a first step to empower phylogenetic posterior estimation with deep learning techniques. By handling the non-Euclidean branch length space of phylogenetic models with carefully designed permutation equivariant transformations, VBPI-NF uses normalizing flows to provide a rich family of flexible branch length distributions that generalize across different tree topologies. We show that VBPI-NF significantly improves upon the vanilla VBPI on a benchmark of challenging real data Bayesian phylogenetic inference problems. Further investigation also reveals that the structured parameterization in those permutation equivariant transformations can provide additional amortization benefit.


Archaeoscape: Bringing Aerial Laser Scanning Archaeology to the Deep Learning Era

Neural Information Processing Systems

Airborne Laser Scanning (ALS) technology has transformed modern archaeology by unveiling hidden landscapes beneath dense vegetation. However, the lack of expert-annotated, open-access resources has hindered the analysis of ALS data using advanced deep learning techniques. We address this limitation with Archaeoscape (available at https://archaeoscape.ai/data/2024), a novel large-scale archaeological ALS dataset spanning 888 km in Cambodia with 31,141 annotated archaeological features from the Angkorian period. Archaeoscape is over four times larger than comparable datasets, and the first ALS archaeology resource with open-access data, annotations, and models.We benchmark several recent segmentation models to demonstrate the benefits of modern vision techniques for this problem and highlight the unique challenges of discovering subtle human-made structures under dense jungle canopies. By making Archaeoscape available in open access, we hope to bridge the gap between traditional archaeology and modern computer vision methods.


Neural Non-Rigid Tracking

Neural Information Processing Systems

We introduce a novel, end-to-end learnable, differentiable non-rigid tracker that enables state-of-the-art non-rigid reconstruction by a learned robust optimization. Given two input RGB-D frames of a non-rigidly moving object, we employ a convolutional neural network to predict dense correspondences and their confidences. These correspondences are used as constraints in an as-rigid-as-possible (ARAP) optimization problem. By enabling gradient back-propagation through the weighted non-linear least squares solver, we are able to learn correspondences and confidences in an end-to-end manner such that they are optimal for the task of non-rigid tracking. Under this formulation, correspondence confidences can be learned via self-supervision, informing a learned robust optimization, where outliers and wrong correspondences are automatically down-weighted to enable effective tracking. Compared to state-of-the-art approaches, our algorithm shows improved reconstruction performance, while simultaneously achieving 85 times faster correspondence prediction than comparable deep-learning based methods.


Adaptive wavelet distillation from neural networks through interpretations

Neural Information Processing Systems

Recent deep-learning models have achieved impressive prediction performance, but often sacrifice interpretability and computational efficiency. Interpretability is crucial in many disciplines, such as science and medicine, where models must be carefully vetted or where interpretation is the goal itself. Moreover, interpretable models are concise and often yield computational efficiency. Here, we propose adaptive wavelet distillation (AWD), a method which aims to distill information from a trained neural network into a wavelet transform. Specifically, AWD penalizes feature attributions of a neural network in the wavelet domain to learn an effective multi-resolution wavelet transform.


Hidden Progress in Deep Learning: SGD Learns Parities Near the Computational Limit

Neural Information Processing Systems

There is mounting evidence of emergent phenomena in the capabilities of deep learning methods as we scale up datasets, model sizes, and training times. While there are some accounts of how these resources modulate statistical capacity, far less is known about their effect on the computational problem of model training. This work conducts such an exploration through the lens of learning a $k$-sparse parity of $n$ bits, a canonical discrete search problem which is statistically easy but computationally hard. Empirically, we find that a variety of neural networks successfully learn sparse parities, with discontinuous phase transitions in the training curves. On small instances, learning abruptly occurs at approximately $n^{O(k)}$ iterations; this nearly matches SQ lower bounds, despite the apparent lack of a sparse prior. Our theoretical analysis shows that these observations are not explained by a Langevin-like mechanism, whereby SGD stumbles in the dark until it finds the hidden set of features (a natural algorithm which also runs in $n^{O(k)}$ time). Instead, we show that SGD gradually amplifies the sparse solution via a Fourier gap in the population gradient, making continual progress that is invisible to loss and error metrics.


NurViD: A Large Expert-Level Video Database for Nursing Procedure Activity Understanding

Neural Information Processing Systems

The application of deep learning to nursing procedure activity understanding has the potential to greatly enhance the quality and safety of nurse-patient interactions. By utilizing the technique, we can facilitate training and education, improve quality control, and enable operational compliance monitoring. However, the development of automatic recognition systems in this field is currently hindered by the scarcity of appropriately labeled datasets. The existing video datasets pose several limitations: 1) these datasets are small-scale in size to support comprehensive investigations of nursing activity; 2) they primarily focus on single procedures, lacking expert-level annotations for various nursing procedures and action steps; and 3) they lack temporally localized annotations, which prevents the effective localization of targeted actions within longer video sequences. To mitigate these limitations, we propose NurViD, a large video dataset with expert-level annotation for nursing procedure activity understanding. NurViD consists of over 1.5k videos totaling 144 hours, making it approximately four times longer than the existing largest nursing activity datasets. Notably, it encompasses 51 distinct nursing procedures and 177 action steps, providing a much more comprehensive coverage compared to existing datasets that primarily focus on limited procedures. To evaluate the efficacy of current deep learning methods on nursing activity understanding, we establish three benchmarks on NurViD: procedure recognition on untrimmed videos, procedure and action recognition on trimmed videos, and action detection.