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 Learning in High Dimensional Spaces


Graphical Model-Based Learning in High Dimensional Feature Spaces

AAAI Conferences

Digital media tend to combine text and images to express richer information, especially on image hosting and online shopping websites. This trend presents a challenge in understanding the contents from different forms of information. Features representing visual information are usually sparse in high dimensional space, which makes the learning process intractable. In order to understand text and its related visual information, we present a new graphical model-based approach to discover more meaningful information in rich media. We extend the standard Latent Dirichlet Allocation (LDA) framework to learn in high dimensional feature spaces.


An Efficient Sufficient Dimension Reduction Method for Identifying Genetic Variants of Clinical Significance

arXiv.org Machine Learning

Fast and cheaper next generation sequencing technologies will generate unprecedentedly massive and highly-dimensional genomic and epigenomic variation data. In the near future, a routine part of medical record will include the sequenced genomes. A fundamental question is how to efficiently extract genomic and epigenomic variants of clinical utility which will provide information for optimal wellness and interference strategies. Traditional paradigm for identifying variants of clinical validity is to test association of the variants. However, significantly associated genetic variants may or may not be usefulness for diagnosis and prognosis of diseases. Alternative to association studies for finding genetic variants of predictive utility is to systematically search variants that contain sufficient information for phenotype prediction. To achieve this, we introduce concepts of sufficient dimension reduction and coordinate hypothesis which project the original high dimensional data to very low dimensional space while preserving all information on response phenotypes. We then formulate clinically significant genetic variant discovery problem into sparse SDR problem and develop algorithms that can select significant genetic variants from up to or even ten millions of predictors with the aid of dividing SDR for whole genome into a number of subSDR problems defined for genomic regions. The sparse SDR is in turn formulated as sparse optimal scoring problem, but with penalty which can remove row vectors from the basis matrix. To speed up computation, we develop the modified alternating direction method for multipliers to solve the sparse optimal scoring problem which can easily be implemented in parallel. To illustrate its application, the proposed method is applied to simulation data and the NHLBI's Exome Sequencing Project dataset


Feature-aware Label Space Dimension Reduction for Multi-label Classification

Neural Information Processing Systems

Label space dimension reduction (LSDR) is an efficient and effective paradigm for multi-label classification with many classes. Existing approaches to LSDR, such as compressive sensing and principal label space transformation, exploit only the label part of the dataset, but not the feature part. In this paper, we propose a novel approach to LSDR that considers both the label and the feature parts. The approach, called conditional principal label space transformation, is based on minimizing an upper bound of the popular Hamming loss. The minimization step of the approach can be carried out efficiently by a simple use of singular value decomposition. In addition, the approach can be extended to a kernelized version that allows the use of sophisticated feature combinations to assist LSDR. The experimental results verify that the proposed approach is more effective than existing ones to LSDR across many real-world datasets.


Super-Bit Locality-Sensitive Hashing

Neural Information Processing Systems

Sign-random-projection locality-sensitive hashing (SRP-LSH) is a probabilistic dimension reduction method which provides an unbiased estimate of angular similarity, yet suffers from the large variance of its estimation. In this work, we propose the Super-Bit locality-sensitive hashing (SBLSH). It is easy to implement, which orthogonalizes the random projection vectors in batches, and it is theoretically guaranteed that SBLSH also provides an unbiased estimate of angular similarity, yet with a smaller variance when the angle to estimate is within $(0,\pi/2]$. The extensive experiments on real data well validate that given the same length of binary code, SBLSH may achieve significant mean squared error reduction in estimating pairwise angular similarity. Moreover, SBLSH shows the superiority over SRP-LSH in approximate nearest neighbor (ANN) retrieval experiments.


Multinomial Relation Prediction in Social Data: A Dimension Reduction Approach

AAAI Conferences

The recent popularization of social web services has made them one of the primary uses of the World Wide Web. An important concept in social web services is social actions such as making connections and communicating with others and adding annotations to web resources. Predicting social actions would improve many fundamental web applications, such as recommendations and web searches. One remarkable characteristic of social actions is that they involve multiple and heterogeneous objects such as users, documents, keywords, and locations. However, the high-dimensional property of such multinomial relations poses one fundamental challenge, that is, predicting multinomial relations with only a limited amount of data. In this paper, we propose a new multinomial relation prediction method, which is robust to data sparsity. We transform each instance of a multinomial relation into a set of binomial relations between the objects and the multinomial relation of the involved objects. We then apply an extension of a low-dimensional embedding technique to these binomial relations, which results in a generalized eigenvalue problem guaranteeing global optimal solutions. We also incorporate attribute information as side information to address the โ€œcold startโ€ problem in multinomial relation prediction. Experiments with various real-world social web service datasets demonstrate that the proposed method is more robust against data sparseness as compared to several existing methods, which can only find sub-optimal solutions.


Variable Selection in High Dimensions with Random Designs and Orthogonal Matching Pursuit

arXiv.org Machine Learning

The performance of Orthogonal Matching Pursuit (OMP) for variable selection is analyzed for random designs. When contrasted with the deterministic case, since the performance is here measured after averaging over the distribution of the design matrix, one can have far less stringent sparsity constraints on the coefficient vector. We demonstrate that for exact sparse vectors, the performance of the OMP is similar to known results on the Lasso algorithm [\textit{IEEE Trans. Inform. Theory} \textbf{55} (2009) 2183--2202]. Moreover, variable selection under a more relaxed sparsity assumption on the coefficient vector, whereby one has only control on the $\ell_1$ norm of the smaller coefficients, is also analyzed. As a consequence of these results, we also show that the coefficient estimate satisfies strong oracle type inequalities.


Gradient-based kernel dimension reduction for supervised learning

arXiv.org Machine Learning

This paper proposes a novel kernel approach to linear dimension reduction for supervised learning. The purpose of the dimension reduction is to find directions in the input space to explain the output as effectively as possible. The proposed method uses an estimator for the gradient of regression function, based on the covariance operators on reproducing kernel Hilbert spaces. In comparison with other existing methods, the proposed one has wide applicability without strong assumptions on the distributions or the type of variables, and uses computationally simple eigendecomposition. Experimental results show that the proposed method successfully finds the effective directions with efficient computation.


Sufficient Component Analysis for Supervised Dimension Reduction

arXiv.org Machine Learning

The purpose of sufficient dimension reduction (SDR) is to find the low-dimensional subspace of input features that is sufficient for predicting output values. In this paper, we propose a novel distribution-free SDR method called sufficient component analysis (SCA), which is computationally more efficient than existing methods. In our method, a solution is computed by iteratively performing dependence estimation and maximization: Dependence estimation is analytically carried out by recently-proposed least-squares mutual information (LSMI), and dependence maximization is also analytically carried out by utilizing the Epanechnikov kernel. Through large-scale experiments on real-world image classification and audio tagging problems, the proposed method is shown to compare favorably with existing dimension reduction approaches.


Semi-Supervised Dimension Reduction for Multi-Label Classification

AAAI Conferences

A significant challenge to make learning techniques more suitable for general purpose use in AI is to move beyond i) complete supervision, ii) low dimensional data and iii) a single label per instance. Solving this challenge would allow making predictions for high dimensional large dataset with multiple (but possibly incomplete) labelings. While other work has addressed each of these problems separately, in this paper we show how to address them together, namely the problem of semi-supervised dimension reduction for multi-labeled classification, SSDR-MC. To our knowledge this is the first paper that attempts to address all challenges together. In this work, we study a novel joint learning framework which performs optimization for dimension reduction and multi-label inference in semi-supervised setting. The experimental results validate the performance of our approach, and demonstrate the effectiveness of connecting dimension reduction and learning.


Learning sparse gradients for variable selection and dimension reduction

arXiv.org Machine Learning

Variable selection and dimension reduction are two commonly adopted approaches for high-dimensional data analysis, but have traditionally been treated separately. Here we propose an integrated approach, called sparse gradient learning (SGL), for variable selection and dimension reduction via learning the gradients of the prediction function directly from samples. By imposing a sparsity constraint on the gradients, variable selection is achieved by selecting variables corresponding to non-zero partial derivatives, and effective dimensions are extracted based on the eigenvectors of the derived sparse empirical gradient covariance matrix. An error analysis is given for the convergence of the estimated gradients to the true ones in both the Euclidean and the manifold setting. We also develop an efficient forward-backward splitting algorithm to solve the SGL problem, making the framework practically scalable for medium or large datasets. The utility of SGL for variable selection and feature extraction is explicitly given and illustrated on artificial data as well as real-world examples. The main advantages of our method include variable selection for both linear and nonlinear predictions, effective dimension reduction with sparse loadings, and an efficient algorithm for large p, small n problems.