Learning Graphical Models
A Bayesian model for identifying hierarchically organised states in neural population activity
Patrick Putzky, Florian Franzen, Giacomo Bassetto, Jakob H. Macke
Neural population activity in cortical circuits is not solely driven by external inputs, but is also modulated by endogenous states which vary on multiple time-scales. To understand information processing in cortical circuits, we need to understand the statistical structure of internal states and their interaction with sensory inputs. Here, we present a statistical model for extracting hierarchically organised neural population states from multi-channel recordings of neural spiking activity. Population states are modelled using a hidden Markov decision tree with state-dependent tuning parameters and a generalised linear observation model. We present a varia-tional Bayesian inference algorithm for estimating the posterior distribution over parameters from neural population recordings. On simulated data, we show that we can identify the underlying sequence of population states and reconstruct the ground truth parameters. Using population recordings from visual cortex, we find that a model with two levels of population states outperforms both a one-state and a two-state generalised linear model. Finally, we find that modelling of state-dependence also improves the accuracy with which sensory stimuli can be decoded from the population response.
Fast Sampling-Based Inference in Balanced Neuronal Networks
Guillaume Hennequin, Laurence Aitchison, Mate Lengyel
Multiple lines of evidence support the notion that the brain performs probabilistic inference in multiple cognitive domains, including perception and decision making. There is also evidence that probabilistic inference may be implemented in the brain through the (quasi-)stochastic activity of neural circuits, producing samples from the appropriate posterior distributions, effectively implementing a Markov chain Monte Carlo algorithm. However, time becomes a fundamental bottleneck in such sampling-based probabilistic representations: the quality of inferences depends on how fast the neural circuit generates new, uncorrelated samples from its stationary distribution (the posterior). We explore this bottleneck in a simple, linear-Gaussian latent variable model, in which posterior sampling can be achieved by stochastic neural networks with linear dynamics. The well-known Langevin sampling (LS) recipe, so far the only sampling algorithm for continuous variables of which a neural implementation has been suggested, naturally fits into this dynamical framework. However, we first show analytically and through simulations that the symmetry of the synaptic weight matrix implied by LS yields critically slow mixing when the posterior is high-dimensional. Next, using methods from control theory, we construct and inspect networks that are optimally fast, and hence orders of magnitude faster than LS, while being far more biologically plausible. In these networks, strong - but transient - selective amplification of external noise generates the spatially correlated activity fluctuations prescribed by the posterior. Intriguingly, although a detailed balance of excitation and inhibition is dynamically maintained, detailed balance of Markov chain steps in the resulting sampler is violated, consistent with recent findings on how statistical irreversibility can overcome the speed limitation of random walks in other domains.
Diverse Sequential Subset Selection for Supervised Video Summarization
Boqing Gong, Wei-Lun Chao, Kristen Grauman, Fei Sha
Video summarization is a challenging problem with great application potential. Whereas prior approaches, largely unsupervised in nature, focus on sampling useful frames and assembling them as summaries, we consider video summarization as a supervised subset selection problem. Our idea is to teach the system to learn from human-created summaries how to select informative and diverse subsets, so as to best meet evaluation metrics derived from human-perceived quality. To this end, we propose the sequential determinantal point process (seqDPP), a probabilistic model for diverse sequential subset selection. Our novel seqDPP heeds the inherent sequential structures in video data, thus overcoming the deficiency of the standard DPP, which treats video frames as randomly permutable items. Meanwhile, seqDPP retains the power of modeling diverse subsets, essential for summarization. Our extensive results of summarizing videos from 3 datasets demonstrate the superior performance of our method, compared to not only existing unsupervised methods but also naive applications of the standard DPP model.
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First provide a summary of the paper, and then address the following criteria: Quality, clarity, originality and significance. The authors present a novel non-parametric Bayesian model for unsupervised clustering. The model uses a two level hierarchy of Dirichlet process priors to handle clusters which may be multi-modal, skewed and/or heavy tailed. The authors present a collapsed Gibbs sampler for inference which exploits the conjugacy of the model. The authors do an excellent job of motivating the model by explaining the deficiencies of the standard infinite mixture of Gaussians.
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First provide a summary of the paper, and then address the following criteria: Quality, clarity, originality and significance. As a major novelty, the authors propose that the stochasticity of synaptic transmission is directly involved in the implementation of stochasticity necessary for Monte Carlo sampling. The neurons used throughout the paper are binary threshold units and not spiking neurons. These binary neurons are able to provide useful insights into how a neuronal network may solve computational problems, but it is important to distinguish between implementations using binary units and spiking neurons. The authors include a short section about spike-based implementation in the appendix, but they do not demonstrate that the spike based implementation is able to perform the same tasks with similar performance.
Neurons as Monte Carlo Samplers: Bayesian Inference and Learning in Spiking Networks
We propose a spiking network model capable of performing both approximate inference and learning for any hidden Markov model. The lower layer sensory neurons detect noisy measurements of hidden world states. The higher layer neurons with recurrent connections infer a posterior distribution over world states from spike trains generated by sensory neurons. We show how such a neuronal network with synaptic plasticity can implement a form of Bayesian inference similar to Monte Carlo methods such as particle filtering. Each spike in the population of inference neurons represents a sample of a particular hidden world state.