We discuss a method for obtaining a subject's a priori beliefs from his/her behavior in a psychophysics context, under the assumption that the behavior is (nearly) optimal from a Bayesian perspective. The method is nonparametric in the sense that we do not assume that the prior belongs to any fixed class of distributions (e.g., Gaussian). Despite this increased generality, the method is relatively simple to implement, being based in the simplest case on a linear programming algorithm, and more generally on a straightforward maximum likelihood or maximum a posteriori formulation, which turns out to be a convex optimization problem (with no non-global local maxima) in many important cases. In addition, we develop methods for analyzing the uncertainty of these estimates. We demonstrate the accuracy of the method in a simple simulated coin-flipping setting; in particular, the method is able to precisely track the evolution of the subject's posterior distribution as more and more data are observed. We close by briefly discussing an interesting connection to recent models of neural population coding.

We present a simple and scalable algorithm for large-margin estimation of structured models, including an important class of Markov networks and combinatorial models. We formulate the estimation problem as a convex-concave saddle-point problem and apply the extragradient method, yielding an algorithm with linear convergence using simple gradient and projection calculations. The projection step can be solved using combinatorial algorithms for min-cost quadratic flow. This makes the approach an efficient alternative to formulations based on reductions to a quadratic program (QP). We present experiments on two very different structured prediction tasks: 3D image segmentation and word alignment, illustrating the favorable scaling properties of our algorithm.

The misjudgement of tilt in images lies at the heart of entertaining visual illusions and rigorous perceptual psychophysics. A wealth of findings has attracted many mechanistic models, but few clear computational principles. We adopt a Bayesian approach to perceptual tilt estimation, showing how a smoothness prior offers a powerful way of addressing much confusing data. In particular, we faithfully model recent results showing that confidence in estimation can be systematically affected by the same aspects of images that affect bias. Confidence is central to Bayesian modeling approaches, and is applicable in many other perceptual domains. Perceptual anomalies and illusions, such as the misjudgements of motion and tilt evident in so many psychophysical experiments, have intrigued researchers for decades.

Reinforcement learning by direct policy gradient estimation is attractive in theory but in practice leads to notoriously ill-behaved optimization problems. We improve its robustness and speed of convergence with stochastic meta-descent, a gain vector adaptation method that employs fast Hessian-vector products. In our experiments the resulting algorithms outperform previously employed online stochastic, offline conjugate, and natural policy gradient methods.

An increasing number of projects in neuroscience requires the statistical analysis of high dimensional data sets, as, for instance, in predicting behavior from neural firing or in operating artificial devices from brain recordings in brain-machine interfaces. Linear analysis techniques remain prevalent in such cases, but classical linear regression approaches are often numerically too fragile in high dimensions. In this paper, we address the question of whether EMG data collected from arm movements of monkeys can be faithfully reconstructed with linear approaches from neural activity in primary motor cortex (M1). To achieve robust data analysis, we develop a full Bayesian approach to linear regression that automatically detects and excludes irrelevant features in the data, regularizing against overfitting. In comparison with ordinary least squares, stepwise regression, partial least squares, LASSO regression and a brute force combinatorial search for the most predictive input features in the data, we demonstrate that the new Bayesian method offers a superior mixture of characteristics in terms of regularization against overfitting, computational efficiency and ease of use, demonstrating its potential as a drop-in replacement for other linear regression techniques. As neuroscientific results, our analyses demonstrate that EMG data can be well predicted from M1 neurons, further opening the path for possible real-time interfaces between brains and machines.

Consider the problem of joint parameter estimation and prediction in a Markov random field: i.e., the model parameters are estimated on the basis of an initial set of data, and then the fitted model is used to perform prediction (e.g., smoothing, denoising, interpolation) on a new noisy observation. Working in the computation-limited setting, we analyze a joint method in which the same convex variational relaxation is used to construct an M-estimator for fitting parameters, and to perform approximate marginalization for the prediction step. The key result of this paper is that in the computation-limited setting, using an inconsistent parameter estimator (i.e., an estimator that returns the "wrong" model even in the infinite data limit) is provably beneficial, since the resulting errors can partially compensate for errors made by using an approximate prediction technique. En route to this result, we analyze the asymptotic properties of M-estimators based on convex variational relaxations, and establish a Lipschitz stability property that holds for a broad class of variational methods. We show that joint estimation/prediction based on the reweighted sum-product algorithm substantially outperforms a commonly used heuristic based on ordinary sum-product.

We present a probabilistic generative model of entity relationships and their attributes that simultaneously discovers groups among the entities and topics among the corresponding textual attributes. Block-models of relationship data have been studied in social network analysis for some time. Here we simultaneously cluster in several modalities at once, incorporating the attributes (here, words) associated with certain relationships. Significantly, joint inference allows the discovery of topics to be guided by the emerging groups, and vice-versa. We present experimental results on two large data sets: sixteen years of bills put before the U.S. Senate, comprising their corresponding text and voting records, and thirteen years of similar data from the United Nations. We show that in comparison with traditional, separate latent-variable models for words, or Blockstructures for votes, the Group-Topic model's joint inference discovers more cohesive groups and improved topics.

Humans make optimal perceptual decisions in noisy and ambiguous conditions. Computations underlying such optimal behavior have been shown to rely on probabilistic inference according to generative models whose structure is usually taken to be known a priori. We argue that Bayesian model selection is ideal for inferring similar and even more complex model structures from experience. We find in experiments that humans learn subtle statistical properties of visual scenes in a completely unsupervised manner. We show that these findings are well captured by Bayesian model learning within a class of models that seek to explain observed variables by independent hidden causes.

We consider criteria for variational representations of non-Gaussian latent variables, and derive variational EM algorithms in general form. We establish a general equivalence among convex bounding methods, evidence based methods, and ensemble learning/Variational Bayes methods, which has previously been demonstrated only for particular cases.

This paper presents a new sampling algorithm for approximating functions of variables representable as undirected graphical models of arbitrary connectivity with pairwise potentials, as well as for estimating the notoriously difficult partition function of the graph. The algorithm fits into the framework of sequential Monte Carlo methods rather than the more widely used MCMC, and relies on constructing a sequence of intermediate distributions which get closer to the desired one. While the idea of using "tempered" proposals is known, we construct a novel sequence of target distributions where, rather than dropping a global temperature parameter, we sequentially couple individual pairs of variables that are, initially, sampled exactly from a spanning tree of the variables.