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 Learning Graphical Models


Implicit Mixtures of Restricted Boltzmann Machines

Neural Information Processing Systems

We present a mixture model whose components are Restricted Boltzmann Machines (RBMs). This possibility has not been considered before because computing the partition function of an RBM is intractable, which appears to make learning a mixture of RBMs intractable as well. Surprisingly, when formulated as a third-order Boltzmann machine, such a mixture model can be learned tractably using contrastive divergence. The energy function of the model captures three-way interactions among visible units, hidden units, and a single hidden multinomial unit that represents the cluster labels. The distinguishing feature of this model is that, unlike other mixture models, the mixing proportions are not explicitly parameterized. Instead, they are defined implicitly via the energy function and depend on all the parameters in the model. We present results for the MNIST and NORB datasets showing that the implicit mixture of RBMs learns clusters that reflect the class structure in the data.


Help or Hinder: Bayesian Models of Social Goal Inference

Neural Information Processing Systems

Everyday social interactions are heavily influenced by our snap judgments about others' goals. Even young infants can infer the goals of intentional agents from observing how they interact with objects and other agents in their environment: e.g., that one agent is'helping' or'hindering' another's attempt to get up a hill or open a box. We propose a model for how people can infer these social goals from actions, based on inverse planning in multiagent Markov decision problems (MDPs). The model infers the goal most likely to be driving an agent's behavior byassuming the agent acts approximately rationally given environmental constraints andits model of other agents present.


A Gaussian Tree Approximation for Integer Least-Squares

Neural Information Processing Systems

This paper proposes a new algorithm for the linear least squares problem where the unknown variables are constrained to be in a finite set. The factor graph that corresponds to this problem is very loopy; in fact, it is a complete graph. Hence, applying the Belief Propagation (BP) algorithm yields very poor results. The algorithm described here is based on an optimal tree approximation of the Gaussian density of the unconstrained linear system. It is shown that even though the approximation is not directly applied to the exact discrete distribution, applying the BP algorithm to the modified factor graph outperforms current methods in terms of both performance and complexity. The improved performance of the proposed algorithm is demonstrated on the problem of MIMO detection.


Time-rescaling methods for the estimation and assessment of non-Poisson neural encoding models

Neural Information Processing Systems

Recent work on the statistical modeling of neural responses has focused on modulated renewal processes in which the spike rate is a function of the stimulus and recent spiking history. Typically, these models incorporate spike-history dependencies via either: (A) a conditionally-Poisson process with rate dependent on a linear projection of the spike train history (e.g., generalized linear model); or (B) a modulated non-Poisson renewal process (e.g., inhomogeneous gamma process). Here we show that the two approaches can be combined, resulting in a {\it conditional renewal} (CR) model for neural spike trains. This model captures both real and rescaled-time effects, and can be fit by maximum likelihood using a simple application of the time-rescaling theorem [1]. We show that for any modulated renewal process model, the log-likelihood is concave in the linear filter parameters only under certain restrictive conditions on the renewal density (ruling out many popular choices, e.g. gamma with $\kappa \neq1$), suggesting that real-time history effects are easier to estimate than non-Poisson renewal properties. Moreover, we show that goodness-of-fit tests based on the time-rescaling theorem [1] quantify relative-time effects, but do not reliably assess accuracy in spike prediction or stimulus-response modeling. We illustrate the CR model with applications to both real and simulated neural data.


Sensitivity analysis in HMMs with application to likelihood maximization

Neural Information Processing Systems

This paper considers a sensitivity analysis in Hidden Markov Models with continuous state and observation spaces. We propose an Infinitesimal Perturbation Analysis (IPA) on the filtering distribution with respect to some parameters of the model. We describe a methodology for using any algorithm that estimates the filtering density, such as Sequential Monte Carlo methods, to design an algorithm that estimates its gradient. The resulting IPA estimator is proven to be asymptotically unbiased, consistent and has computational complexity linear in the number of particles. We consider an application of this analysis to the problem of identifying unknown parameters of the model given a sequence of observations. We derive an IPA estimator for the gradient of the log-likelihood, which may be used in a gradient method for the purpose of likelihood maximization. We illustrate the method with several numerical experiments.


A Neural Implementation of the Kalman Filter

Neural Information Processing Systems

There is a growing body of experimental evidence to suggest that the brain is capable of approximating optimal Bayesian inference in the face of noisy input stimuli. Despite this progress, the neural underpinnings of this computation are still poorly understood. In this paper we focus on the problem of Bayesian filtering of stochastic time series. In particular we introduce a novel neural network, derived from a line attractor architecture, whose dynamics map directly onto those of the Kalman Filter in the limit where the prediction error is small. When the prediction error is large we show that the network responds robustly to change-points in a way that is qualitatively compatible with the optimal Bayesian model. The model suggests ways in which probability distributions are encoded in the brain and makes a number of testable experimental predictions.


Hierarchical Learning of Dimensional Biases in Human Categorization

Neural Information Processing Systems

Existing models of categorization typically represent to-be-classified items as points in a multidimensional space. While from a mathematical point of view, an infinite number of basis sets can be used to represent points in this space, the choice of basis set is psychologically crucial. People generally choose the same basis dimensions, and have a strong preference to generalize along the axes of these dimensions, but not diagonally". What makes some choices of dimension special? We explore the idea that the dimensions used by people echo the natural variation in the environment. Specifically, we present a rational model that does not assume dimensions, but learns the same type of dimensional generalizations that people display. This bias is shaped by exposing the model to many categories with a structure hypothesized to be like those which children encounter. Our model can be viewed as a type of transformed Dirichlet process mixture model, where it is the learning of the base distribution of the Dirichlet process which allows dimensional generalization.The learning behaviour of our model captures the developmental shift from roughly "isotropic" for children to the axis-aligned generalization that adults show."


Dependent Dirichlet Process Spike Sorting

Neural Information Processing Systems

In this paper we propose a new incremental spike sorting model that automatically eliminates refractory period violations, accounts for action potential waveform drift, and can handle appearance" and "disappearance" of neurons. Our approach is to augment a known time-varying Dirichlet process that ties together a sequence of infinite Gaussian mixture models, one per action potential waveform observation, with an interspike-interval-dependent likelihood that prohibits refractory period violations. We demonstrate this model by showing results from sorting two publicly available neural data recordings for which the a partial ground truth labeling is known."


Posterior vs Parameter Sparsity in Latent Variable Models

Neural Information Processing Systems

In this paper we explore the problem of biasing unsupervised models to favor sparsity. We extend the posterior regularization framework [8] to encourage the model to achieve posterior sparsity on the unlabeled training data. We apply this new method to learn first-order HMMs for unsupervised part-of-speech (POS) tagging, and show that HMMs learned this way consistently and significantly out-performs both EM-trained HMMs, and HMMs with a sparsity-inducing Dirichlet prior trained by variational EM. We evaluate these HMMs on three languages — English, Bulgarian and Portuguese — under four conditions. We find that our method always improves performance with respect to both baselines, while variational Bayes actually degrades performance in most cases. We increase accuracy with respect to EM by 2.5%-8.7% absolute and we see improvements even in a semisupervised condition where a limited dictionary is provided.


Canonical Time Warping for Alignment of Human Behavior

Neural Information Processing Systems

Alignment of time series is an important problem to solve in many scientific disciplines. In particular, temporal alignment of two or more subjects performing similar activities is a challenging problem due to the large temporal scale difference between human actions as well as the inter/intra subject variability. In this paper we present canonical time warping (CTW), an extension of canonical correlation analysis (CCA) for spatio-temporal alignment of the behavior between two subjects. CTW extends previous work on CCA in two ways: (i) it combines CCA with dynamic time warping for temporal alignment; and (ii) it extends CCA to allow local spatial deformations. We show CTWs effectiveness in three experiments: alignment of synthetic data, alignment of motion capture data of two subjects performing similar actions, and alignment of two people with similar facial expressions. Our results demonstrate that CTW provides both visually and qualitatively better alignment than state-of-the-art techniques based on dynamic time warping.