Understanding the adaptation process of plants to drought stress is essential in improving management practices, breeding strategies as well as engineering viable crops for a sustainable agriculture in the coming decades. Hyper-spectral imaging provides a particularly promising approach to gain such understanding since it allows to discover non-destructively spectral characteristics of plants governed primarily by scattering and absorption characteristics of the leaf internal structure and biochemical constituents. Several drought stress indices have been derived using hyper-spectral imaging. However, they are typically based on few hyper-spectral images only, rely on interpretations of experts, and consider few wavelengths only. In this study, we present the first data-driven approach to discovering spectral drought stress indices, treating it as an unsupervised labeling problem at massive scale. To make use of short range dependencies of spectral wavelengths, we develop an online variational Bayes algorithm for latent Dirichlet allocation with convolved Dirichlet regularizer. This approach scales to massive datasets and, hence, provides a more objective complement to plant physiological practices. The spectral topics found conform to plant physiological knowledge and can be computed in a fraction of the time compared to existing LDA approaches.

This paper explores a new framework for reinforcement learning based on online convex optimization, in particular mirror descent and related algorithms. Mirror descent can be viewed as an enhanced gradient method, particularly suited to minimization of convex functions in highdimensional spaces. Unlike traditional gradient methods, mirror descent undertakes gradient updates of weights in both the dual space and primal space, which are linked together using a Legendre transform. Mirror descent can be viewed as a proximal algorithm where the distance generating function used is a Bregman divergence. A new class of proximal-gradient based temporal-difference (TD) methods are presented based on different Bregman divergences, which are more powerful than regular TD learning. Examples of Bregman divergences that are studied include p-norm functions, and Mahalanobis distance based on the covariance of sample gradients. A new family of sparse mirror-descent reinforcement learning methods are proposed, which are able to find sparse fixed points of an l1-regularized Bellman equation at significantly less computational cost than previous methods based on second-order matrix methods. An experimental study of mirror-descent reinforcement learning is presented using discrete and continuous Markov decision processes.

Hybrid continuous-discrete models naturally represent many real-world applications in robotics, finance, and environmental engineering. Inference with large-scale models is challenging because relational structures deteriorate rapidly during inference with observations. The main contribution of this paper is an efficient relational variational inference algorithm that factors largescale probability models into simpler variational models, composed of mixtures of iid (Bernoulli) random variables. The algorithm takes probability relational models of largescale hybrid systems and converts them to a close-to-optimal variational models. Then, it efficiently calculates marginal probabilities on the variational models by using a latent (or lifted) variable elimination or a lifted stochastic sampling. This inference is unique because it maintains the relational structure upon individual observations and during inference steps.

A nonparametric approach for policy learning for POMDPs is proposed. The approach represents distributions over the states, observations, and actions as embeddings in feature spaces, which are reproducing kernel Hilbert spaces. Distributions over states given the observations are obtained by applying the kernel Bayes' rule to these distribution embeddings. Policies and value functions are defined on the feature space over states, which leads to a feature space expression for the Bellman equation. Value iteration may then be used to estimate the optimal value function and associated policy. Experimental results confirm that the correct policy is learned using the feature space representation.

We describe theoretical bounds and a practical algorithm for teaching a model by demonstration in a sequential decision making environment. Unlike previous efforts that have optimized learners that watch a teacher demonstrate a static policy, we focus on the teacher as a decision maker who can dynamically choose different policies to teach different parts of the environment. We develop several teaching frameworks based on previously defined supervised protocols, such as Teaching Dimension, extending them to handle noise and sequences of inputs encountered in an MDP.We provide theoretical bounds on the learnability of several important model classes in this setting and suggest a practical algorithm for dynamic teaching.

EDML is a recently proposed algorithm for learning MAP parameters in Bayesian networks. In this paper, we present a number of new advances and insights on the EDML algorithm. First, we provide the multivalued extension of EDML, originally proposed for Bayesian networks over binary variables. Next, we identify a simplified characterization of EDML that further implies a simple fixed-point algorithm for the convex optimization problem that underlies it. This characterization further reveals a connection between EDML and EM: a fixed point of EDML is a fixed point of EM, and vice versa. We thus identify also a new characterization of EM fixed points, but in the semantics of EDML. Finally, we propose a hybrid EDML/EM algorithm that takes advantage of the improved empirical convergence behavior of EDML, while maintaining the monotonic improvement property of EM.

Joint alignment of a collection of functions is the process of independently transforming the functions so that they appear more similar to each other. Typically, such unsupervised alignment algorithms fail when presented with complex data sets arising from multiple modalities or make restrictive assumptions about the form of the functions or transformations, limiting their generality. We present a transformed Bayesian infinite mixture model that can simultaneously align and cluster a data set. Our model and associated learning scheme offer two key advantages: the optimal number of clusters is determined in a data-driven fashion through the use of a Dirichlet process prior, and it can accommodate any transformation function parameterized by a continuous parameter vector. As a result, it is applicable to a wide range of data types, and transformation functions. We present positive results on synthetic two-dimensional data, on a set of one-dimensional curves, and on various image data sets, showing large improvements over previous work. We discuss several variations of the model and conclude with directions for future work.

Active Learning (AL) is increasingly important in a broad range of applications. Two main AL principles to obtain accurate classification with few labeled data are refinement of the current decision boundary and exploration of poorly sampled regions. In this paper we derive a novel AL scheme that balances these two principles in a natural way. In contrast to many AL strategies, which are based on an estimated class conditional probability ^p(y|x), a key component of our approach is to view this quantity as a random variable, hence explicitly considering the uncertainty in its estimated value. Our main contribution is a novel mathematical framework for uncertainty-based AL, and a corresponding AL scheme, where the uncertainty in ^p(y|x) is modeled by a second-order distribution. On the practical side, we show how to approximate such second-order distributions for kernel density classification. Finally, we find that over a large number of UCI, USPS and Caltech4 datasets, our AL scheme achieves significantly better learning curves than popular AL methods such as uncertainty sampling and error reduction sampling, when all use the same kernel density classifier.

Recently two search algorithms, A* and breadth-first branch and bound (BFBnB), were developed based on a simple admissible heuristic for learning Bayesian network structures that optimize a scoring function. The heuristic represents a relaxation of the learning problem such that each variable chooses optimal parents independently. As a result, the heuristic may contain many directed cycles and result in a loose bound. This paper introduces an improved admissible heuristic that tries to avoid directed cycles within small groups of variables. A sparse representation is also introduced to store only the unique optimal parent choices. Empirical results show that the new techniques significantly improved the efficiency and scalability of A* and BFBnB on most of datasets tested in this paper.

Latent variable models are used to estimate variables of interest quantities which are observable only up to some measurement error. In many studies, such variables are known but not precisely quantifiable (such as "job satisfaction" in social sciences and marketing, "analytical ability" in educational testing, or "inflation" in economics). This leads to the development of measurement instruments to record noisy indirect evidence for such unobserved variables such as surveys, tests and price indexes. In such problems, there are postulated latent variables and a given measurement model. At the same time, other unantecipated latent variables can add further unmeasured confounding to the observed variables. The problem is how to deal with unantecipated latents variables. In this paper, we provide a method loosely inspired by canonical correlation that makes use of background information concerning the "known" latent variables. Given a partially specified structure, it provides a structure learning approach to detect "unknown unknowns," the confounding effect of potentially infinitely many other latent variables. This is done without explicitly modeling such extra latent factors. Because of the special structure of the problem, we are able to exploit a new variation of composite likelihood fitting to efficiently learn this structure. Validation is provided with experiments in synthetic data and the analysis of a large survey done with a sample of over 100,000 staff members of the National Health Service of the United Kingdom.