Learning Graphical Models
Empirical Bayes Estimation for the Stochastic Blockmodel
Suwan, Shakira, Lee, Dominic S., Tang, Runze, Sussman, Daniel L., Tang, Minh, Priebe, Carey E.
Inference for the stochastic blockmodel is currently of burgeoning interest in the statistical community, as well as in various application domains as diverse as social networks, citation networks, brain connectivity networks (connectomics), etc. Recent theoretical developments have shown that spectral embedding of graphs yields tractable distributional results; in particular, a random dot product latent position graph formulation of the stochastic blockmodel informs a mixture of normal distributions for the adjacency spectral embedding. We employ this new theory to provide an empirical Bayes methodology for estimation of block memberships of vertices in a random graph drawn from the stochastic blockmodel, and demonstrate its practical utility. The posterior inference is conducted using a Metropolis-within-Gibbs algorithm. The theory and methods are illustrated through Monte Carlo simulation studies, both within the stochastic blockmodel and beyond, and experimental results on a Wikipedia data set are presented.
A Variational Analysis of Stochastic Gradient Algorithms
Mandt, Stephan, Hoffman, Matthew D., Blei, David M.
Stochastic Gradient Descent (SGD) is an important algorithm in machine learning. With constant learning rates, it is a stochastic process that, after an initial phase of convergence, generates samples from a stationary distribution. We show that SGD with constant rates can be effectively used as an approximate posterior inference algorithm for probabilistic modeling. Specifically, we show how to adjust the tuning parameters of SGD such as to match the resulting stationary distribution to the posterior. This analysis rests on interpreting SGD as a continuous-time stochastic process and then minimizing the Kullback-Leibler divergence between its stationary distribution and the target posterior. (This is in the spirit of variational inference.) In more detail, we model SGD as a multivariate Ornstein-Uhlenbeck process and then use properties of this process to derive the optimal parameters. This theoretical framework also connects SGD to modern scalable inference algorithms; we analyze the recently proposed stochastic gradient Fisher scoring under this perspective. We demonstrate that SGD with properly chosen constant rates gives a new way to optimize hyperparameters in probabilistic models.
Toward Optimal Feature Selection in Naive Bayes for Text Categorization
Tang, Bo, Kay, Steven, He, Haibo
Automated feature selection is important for text categorization to reduce the feature size and to speed up the learning process of classifiers. In this paper, we present a novel and efficient feature selection framework based on the Information Theory, which aims to rank the features with their discriminative capacity for classification. We first revisit two information measures: Kullback-Leibler divergence and Jeffreys divergence for binary hypothesis testing, and analyze their asymptotic properties relating to type I and type II errors of a Bayesian classifier. We then introduce a new divergence measure, called Jeffreys-Multi-Hypothesis (JMH) divergence, to measure multi-distribution divergence for multi-class classification. Based on the JMH-divergence, we develop two efficient feature selection methods, termed maximum discrimination ($MD$) and $MD-\chi^2$ methods, for text categorization. The promising results of extensive experiments demonstrate the effectiveness of the proposed approaches.
Data-Efficient Reinforcement Learning in Continuous-State POMDPs
McAllister, Rowan, Rasmussen, Carl Edward
We present a data-efficient reinforcement learning algorithm resistant to observation noise. Our method extends the highly data-efficient PILCO algorithm (Deisenroth & Rasmussen, 2011) into partially observed Markov decision processes (POMDPs) by considering the filtering process during policy evaluation. PILCO conducts policy search, evaluating each policy by first predicting an analytic distribution of possible system trajectories. We additionally predict trajectories w.r.t. a filtering process, achieving significantly higher performance than combining a filter with a policy optimised by the original (unfiltered) framework. Our test setup is the cartpole swing-up task with sensor noise, which involves nonlinear dynamics and requires nonlinear control.
Collaborative filtering via sparse Markov random fields
Tran, Truyen, Phung, Dinh, Venkatesh, Svetha
Recommender systems play a central role in providing individualized access to information and services. This paper focuses on collaborative filtering, an approach that exploits the shared structure among mind-liked users and similar items. In particular, we focus on a formal probabilistic framework known as Markov random fields (MRF). We address the open problem of structure learning and introduce a sparsity-inducing algorithm to automatically estimate the interaction structures between users and between items. Item-item and user-user correlation networks are obtained as a by-product. Large-scale experiments on movie recommendation and date matching datasets demonstrate the power of the proposed method.
Machine Learning Model of the Swift/BAT Trigger Algorithm for Long GRB Population Studies
Graff, Philip B, Lien, Amy Y, Baker, John G, Sakamoto, Takanori
To draw inferences about gamma-ray burst (GRB) source populations based on Swift observations, it is essential to understand the detection efficiency of the Swift burst alert telescope (BAT). This study considers the problem of modeling the Swift/BAT triggering algorithm for long GRBs, a computationally expensive procedure, and models it using machine learning algorithms. A large sample of simulated GRBs from Lien 2014 is used to train various models: random forests, boosted decision trees (with AdaBoost), support vector machines, and artificial neural networks. The best models have accuracies of $\gtrsim97\%$ ($\lesssim 3\%$ error), which is a significant improvement on a cut in GRB flux which has an accuracy of $89.6\%$ ($10.4\%$ error). These models are then used to measure the detection efficiency of Swift as a function of redshift $z$, which is used to perform Bayesian parameter estimation on the GRB rate distribution. We find a local GRB rate density of $n_0 \sim 0.48^{+0.41}_{-0.23} \ {\rm Gpc}^{-3} {\rm yr}^{-1}$ with power-law indices of $n_1 \sim 1.7^{+0.6}_{-0.5}$ and $n_2 \sim -5.9^{+5.7}_{-0.1}$ for GRBs above and below a break point of $z_1 \sim 6.8^{+2.8}_{-3.2}$. This methodology is able to improve upon earlier studies by more accurately modeling Swift detection and using this for fully Bayesian model fitting. The code used in this is analysis is publicly available online (https://github.com/PBGraff/SwiftGRB_PEanalysis).
Network Inference by Learned Node-Specific Degree Prior
Tang, Qingming, Tu, Lifu, Wang, Weiran, Xu, Jinbo
We propose a novel method for network inference from partially observed edges using a node-specific degree prior. The degree prior is derived from observed edges in the network to be inferred, and its hyper-parameters are determined by cross validation. Then we formulate network inference as a matrix completion problem regularized by our degree prior. Our theoretical analysis indicates that this prior favors a network following the learned degree distribution, and may lead to improved network recovery error bound than previous work. Experimental results on both simulated and real biological networks demonstrate the superior performance of our method in various settings.
Interpretable Selection and Visualization of Features and Interactions Using Bayesian Forests
Krakovna, Viktoriya, Du, Jiong, Liu, Jun S.
It is becoming increasingly important for machine learning methods to make predictions that are interpretable as well as accurate. In many practical applications, it is of interest which features and feature interactions are relevant to the prediction task. We present a novel method, Selective Bayesian Forest Classifier, that strikes a balance between predictive power and interpretability by simultaneously performing classification, feature selection, feature interaction detection and visualization. It builds parsimonious yet flexible models using tree-structured Bayesian networks, and samples an ensemble of such models using Markov chain Monte Carlo. We build in feature selection by dividing the trees into two groups according to their relevance to the outcome of interest. Our method performs competitively on classification and feature selection benchmarks in low and high dimensions, and includes a visualization tool that provides insight into relevant features and interactions.
A Deep Learning Approach to Unsupervised Ensemble Learning
Shaham, Uri, Cheng, Xiuyuan, Dror, Omer, Jaffe, Ariel, Nadler, Boaz, Chang, Joseph, Kluger, Yuval
We show how deep learning methods can be applied in the context of crowdsourcing and unsupervised ensemble learning. First, we prove that the popular model of Dawid and Skene, which assumes that all classifiers are conditionally independent, is {\em equivalent} to a Restricted Boltzmann Machine (RBM) with a single hidden node. Hence, under this model, the posterior probabilities of the true labels can be instead estimated via a trained RBM. Next, to address the more general case, where classifiers may strongly violate the conditional independence assumption, we propose to apply RBM-based Deep Neural Net (DNN). Experimental results on various simulated and real-world datasets demonstrate that our proposed DNN approach outperforms other state-of-the-art methods, in particular when the data violates the conditional independence assumption.
A Tractable Fully Bayesian Method for the Stochastic Block Model
Hayashi, Kohei, Konishi, Takuya, Kawamoto, Tatsuro
The stochastic block model (SBM) is a generative model revealing macroscopic structures in graphs. Bayesian methods are used for (i) cluster assignment inference and (ii) model selection for the number of clusters. In this paper, we study the behavior of Bayesian inference in the SBM in the large sample limit. Combining variational approximation and Laplace's method, a consistent criterion of the fully marginalized log-likelihood is established. Based on that, we derive a tractable algorithm that solves tasks (i) and (ii) concurrently, obviating the need for an outer loop to check all model candidates. Our empirical and theoretical results demonstrate that our method is scalable in computation, accurate in approximation, and concise in model selection.