Learning Graphical Models
Blind system identification using kernel-based methods
Bottegal, Giulio, Risuleo, Riccardo S., Hjalmarsson, Håkan
We propose a new method for blind system identification. Resorting to a Gaussian regression framework, we model the impulse response of the unknown linear system as a realization of a Gaussian process. The structure of the covariance matrix (or kernel) of such a process is given by the stable spline kernel, which has been recently introduced for system identification purposes and depends on an unknown hyperparameter. We assume that the input can be linearly described by few parameters. We estimate these parameters, together with the kernel hyperparameter and the noise variance, using an empirical Bayes approach. The related optimization problem is efficiently solved with a novel iterative scheme based on the Expectation-Maximization method. In particular, we show that each iteration consists of a set of simple update rules. We show, through some numerical experiments, very promising performance of the proposed method.
Variational Gaussian Copula Inference
Han, Shaobo, Liao, Xuejun, Dunson, David B., Carin, Lawrence
We utilize copulas to constitute a unified framework for constructing and optimizing variational proposals in hierarchical Bayesian models. For models with continuous and non-Gaussian hidden variables, we propose a semiparametric and automated variational Gaussian copula approach, in which the parametric Gaussian copula family is able to preserve multivariate posterior dependence, and the nonparametric transformations based on Bernstein polynomials provide ample flexibility in characterizing the univariate marginal posteriors.
Towards information based spatiotemporal patterns as a foundation for agent representation in dynamical systems
Biehl, Martin, Ikegami, Takashi, Polani, Daniel
We present some arguments why existing methods for representing agents fall short in applications crucial to artificial life. Using a thought experiment involving a fictitious dynamical systems model of the biosphere we argue that the metabolism, motility, and the concept of counterfactual variation should be compatible with any agent representation in dynamical systems. We then propose an information-theoretic notion of \emph{integrated spatiotemporal patterns} which we believe can serve as the basic building block of an agent definition. We argue that these patterns are capable of solving the problems mentioned before. We also test this in some preliminary experiments.
Recurrent Exponential-Family Harmoniums without Backprop-Through-Time
Makin, Joseph G., Dichter, Benjamin K., Sabes, Philip N.
Exponential-family harmoniums (EFHs), which extend restricted Boltzmann machines (RBMs) from Bernoulli random variables to other exponential families (Welling et al., 2005), are generative models that can be trained with unsupervised-learning techniques, like contrastive divergence (Hinton et al., 2006; Hinton, 2002), as density estimators for static data. Methods for extending RBMs--and likewise EFHs--to data with temporal dependencies have been proposed previously (Sutskever and Hinton, 2007; Sutskever et al., 2009), the learning procedure being validated by qualitative assessment of the generative model. Here we propose and justify, from a very different perspective, an alternative training procedure, proving sufficient conditions for optimal inference under that procedure. The resulting algorithm can be learned with only forward passes through the data--backprop-through-time is not required, as in previous approaches. The proof exploits a recent result about information retention in density estimators (Makin and Sabes, 2015), and applies it to a "recurrent EFH" (rEFH) by induction. Finally, we demonstrate optimality by simulation, testing the rEFH: (1) as a filter on training data generated with a linear dynamical system, the position of which is noisily reported by a population of "neurons" with Poisson-distributed spike counts; and (2) with the qualitative experiments proposed by Sutskever et al. (2009).
Deep learning meets genome biology
The following interview is one of many included in the report. As part of our ongoing series of interviews surveying the frontiers of machine intelligence, I recently interviewed Brendan Frey. Frey is a co-founder of Deep Genomics, a professor at the University of Toronto and a co-founder of its Machine Learning Group, a senior fellow of the Neural Computation program at the Canadian Institute for Advanced Research, and a fellow of the Royal Society of Canada. His work focuses on using machine learning to understand the genome and to realize new possibilities in genomic medicine. Brendan Frey: I completed my Ph.D. with Geoff Hinton in 1997.
Classification of Big Data with Application to Imaging Genetics
Ulfarsson, Magnus O., Palsson, Frosti, Sigurdsson, Jakob, Sveinsson, Johannes R.
ECENT technological achievements and globalization have increased data acquisition capability in almost all corners of human activities, ranging from scientific and engineering endeavors such as genomics, medical imaging, remote sensing, economics and finance, and all the way to people's personal lives with the emergence of social media through the world wide web and mobile networks. The enormous growth of data creates daunting challenges, not only in finding out how to store and access the data, but more importantly, how to process and make sense of it. Also, since data collection is expensive, we are somehow obliged to make good use of the data at hand, so it is obvious that for further progress, the development of efficient algorithms for processing big data is very important. Big data is usually considered in terms of the number of observations n and the number of variables p measured on each observation. In many branches of science such as genetics and medical imaging, the number of variables is very large and is often much larger than the number of observations. This scenario is often denoted as p n.
100 Machine Learning videos you can't find in Google • /r/MachineLearning
Serious answer: I tend to dive deep into a particular algorithm...learning the math better, getting used to different applications of it, etc. So that's where I usually spend my time - along with the advice /u/Jigsus offered...focusing my learning around the kinds of needs I'm working on problem-/data-wise. Sounds like survival analysis, so I try to find as much material focused around that. On the flip side, I haven't done anything like sentiment analysis, so I know next to nothing about Naive Bayes text classification. I tend to read over a rather wide selection of ML and statistics blogs, so I'm not entirely unclear about such things, it's just that I don't spend a copious amount of time other than playing with a toy dataset now and then.
Arimo Predictive Engine (tm) Shows Opportunity to Improve Investor Returns in Peer-to-Peer Lending - Arimo
Random forest model using Lending Club public dataset shows opportunity to improve adjusted return by 2.75% Arimo recently performed a study using a public dataset provided by Lending Club with the goal of showing how machine learning could improve investor returns. To do this we used the PredictiveEngine component of our Data Intelligence Platform, which provides the ability to easily build a variety of predictive machine learning models which scale transparently when deployed on distributed parallel computing platforms. Lending Club is an online peer-to-peer lending company that connects borrowers with investors who have capital to lend. When a loan application is submitted by a borrower, Lending Club reviews and decides whether to offer a loan at a risk-adjusted rate or to reject the application. As of the 3rd quarter of 2015, more than 12 billion in loans have been issued through Lending Club.
How To Think Real Good
First, it is a brain dump: too long, epsilon-baked, and unpolished. Second, it is not obviously relevant to the topic of this site. Third, parts are more technical than most readers would want. However, a quick, bad post may be better than none. This post was prompted by discussions about Bayesianism and the LessWrong rationalist community, with Scott Alexander, Catharine G. Evans, muflax, and St. Rev. (among others). They are each brilliant, quirky, articulate, and fascinating; consider following them online! They might disagree with much of this post, though, and are not implicated in its defects.] This site concerns ways of thinking about some particularly important things: purpose, self, ethics, authority, and meaning, for instance. My aim is to point out common mistakes in thinking about those things, and how to do better. I enjoy thinking about thinking. That's one reason I spent a dozen years in artificial intelligence research. To make a computer think, you'd need to understand how you think. So AI research is a way of thinking about thinking that forces you to be specific. It calls your bluff if you think you understand thinking, but don't. I thought a lot about how to do AI. 1 In 1988, I put together "How to do research at the MIT AI Lab," a guide for graduate students. Although I edited it, it was a collaboration of many people. There are now many similar guides, some of them better, but this was the first.
Fast methods for training Gaussian processes on large data sets
Moore, Christopher J., Chua, Alvin J. K., Berry, Christopher P. L., Gair, Jonathan R.
Gaussian process regression (GPR) is a non-parametric Bayesian technique for interpolating or fitting data. The main barrier to further uptake of this powerful tool rests in the computational costs associated with the matrices which arise when dealing with large data sets. Here, we derive some simple results which we have found useful for speeding up the learning stage in the GPR algorithm, and especially for performing Bayesian model comparison between different covariance functions. We apply our techniques to both synthetic and real data and quantify the speed-up relative to using nested sampling to numerically evaluate model evidences.