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 Learning Graphical Models


Performance Bounds for Graphical Record Linkage

arXiv.org Machine Learning

Record linkage involves merging records in large, noisy databases to remove duplicate entities. It has become an important area because of its widespread occurrence in bibliometrics, public health, official statistics production, political science, and beyond. Traditional linkage methods directly linking records to one another are computationally infeasible as the number of records grows. As a result, it is increasingly common for researchers to treat record linkage as a clustering task, in which each latent entity is associated with one or more noisy database records. We critically assess performance bounds using the Kullback-Leibler (KL) divergence under a Bayesian record linkage framework, making connections to Kolchin partition models. We provide an upper bound using the KL divergence and a lower bound on the minimum probability of misclassifying a latent entity. We give insights for when our bounds hold using simulated data and provide practical user guidance.


Don't Fear the Bit Flips: Optimized Coding Strategies for Binary Classification

arXiv.org Machine Learning

After being trained, classifiers must often operate on data that has been corrupted by noise. In this paper, we consider the impact of such noise on the features of binary classifiers. Inspired by tools for classifier robustness, we introduce the same classification probability (SCP) to measure the resulting distortion on the classifier outputs. We introduce a low-complexity estimate of the SCP based on quantization and polynomial multiplication. We also study channel coding techniques based on replication error-correcting codes. In contrast to the traditional channel coding approach, where error-correction is meant to preserve the data and is agnostic to the application, our schemes specifically aim to maximize the SCP (equivalently minimizing the distortion of the classifier output) for the same redundancy overhead.


Deep Robust Kalman Filter

arXiv.org Machine Learning

A Robust Markov Decision Process (RMDP) is a sequential decision making model that accounts for uncertainty in the parameters of dynamic systems. This uncertainty introduces difficulties in learning an optimal policy, especially for environments with large state spaces. We propose two algorithms, RTD-DQN and Deep-RoK, for solving large-scale RMDPs using nonlinear approximation schemes such as deep neural networks. The RTD-DQN algorithm incorporates the robust Bellman temporal difference error into a robust loss function, yielding robust policies for the agent. The Deep-RoK algorithm is a robust Bayesian method, based on the Extended Kalman Filter (EKF), that accounts for both the uncertainty in the weights of the approximated value function and the uncertainty in the transition probabilities, improving the robustness of the agent. We provide theoretical results for our approach and test the proposed algorithms on a continuous state domain.


Measuring Sample Quality with Stein's Method

arXiv.org Machine Learning

To improve the efficiency of Monte Carlo estimation, practitioners are turning to biased Markov chain Monte Carlo procedures that trade off asymptotic exactness for computational speed. The reasoning is sound: a reduction in variance due to more rapid sampling can outweigh the bias introduced. However, the inexactness creates new challenges for sampler and parameter selection, since standard measures of sample quality like effective sample size do not account for asymptotic bias. To address these challenges, we introduce a new computable quality measure based on Stein's method that quantifies the maximum discrepancy between sample and target expectations over a large class of test functions. We use our tool to compare exact, biased, and deterministic sample sequences and illustrate applications to hyperparameter selection, convergence rate assessment, and quantifying bias-variance tradeoffs in posterior inference.


MultiView Diffusion Maps

arXiv.org Machine Learning

In this study we consider learning a reduced dimensionality representation from datasets obtained under multiple views. Such multiple views of datasets can be obtained, for example, when the same underlying process is observed using several different modalities, or measured with different instrumentation. Our goal is to effectively exploit the availability of such multiple views for various purposes, such as non-linear embedding, manifold learning, spectral clustering, anomaly detection and non-linear system identification. Our proposed method exploits the intrinsic relation within each view, as well as the mutual relations between views. We do this by defining a cross-view model, in which an implied Random Walk process between objects is restrained to hop between the different views. Our method is robust to scaling of each dataset, and is insensitive to small structural changes in the data. Within this framework, we define new diffusion distances and analyze the spectra of the implied kernels. We demonstrate the applicability of the proposed approach on both artificial and real data sets.


Probabilistic Reduced-Order Modeling for Stochastic Partial Differential Equations

arXiv.org Machine Learning

We discuss a Bayesian formulation to coarse-graining (CG) of PDEs where the coefficients (e.g. material parameters) exhibit random, fine scale variability. The direct solution to such problems requires grids that are small enough to resolve this fine scale variability which unavoidably requires the repeated solution of very large systems of algebraic equations. We establish a physically inspired, data-driven coarse-grained model which learns a low- dimensional set of microstructural features that are predictive of the fine-grained model (FG) response. Once learned, those features provide a sharp distribution over the coarse scale effec- tive coefficients of the PDE that are most suitable for prediction of the fine scale model output. This ultimately allows to replace the computationally expensive FG by a generative proba- bilistic model based on evaluating the much cheaper CG several times. Sparsity enforcing pri- ors further increase predictive efficiency and reveal microstructural features that are important in predicting the FG response. Moreover, the model yields probabilistic rather than single-point predictions, which enables the quantification of the unavoidable epistemic uncertainty that is present due to the information loss that occurs during the coarse-graining process.


The Mythos of Model Interpretability

arXiv.org Artificial Intelligence

Supervised machine learning models boast remarkable predictive capabilities. But can you trust your model? Will it work in deployment? What else can it tell you about the world? We want models to be not only good, but interpretable. And yet the task of interpretation appears underspecified. Papers provide diverse and sometimes non-overlapping motivations for interpretability, and offer myriad notions of what attributes render models interpretable. Despite this ambiguity, many papers proclaim interpretability axiomatically, absent further explanation. In this paper, we seek to refine the discourse on interpretability. First, we examine the motivations underlying interest in interpretability, finding them to be diverse and occasionally discordant. Then, we address model properties and techniques thought to confer interpretability, identifying transparency to humans and post-hoc explanations as competing notions. Throughout, we discuss the feasibility and desirability of different notions, and question the oft-made assertions that linear models are interpretable and that deep neural networks are not.



Neural Machine Translation and Sequence-to-sequence Models: A Tutorial

arXiv.org Machine Learning

This tutorial introduces a new and powerful set of techniques variously called "neural machine translation" or "neural sequence-to-sequence models". These techniques have been used in a number of tasks regarding the handling of human language, and can be a powerful tool in the toolbox of anyone who wants to model sequential data of some sort. The tutorial assumes that the reader knows the basics of math and programming, but does not assume any particular experience with neural networks or natural language processing. It attempts to explain the intuition behind the various methods covered, then delves into them with enough mathematical detail to understand them concretely, and culiminates with a suggestion for an implementation exercise, where readers can test that they understood the content in practice.


An unsupervised bayesian approach for the joint reconstruction and classification of cutaneous reflectance confocal microscopy images

arXiv.org Machine Learning

This paper studies a new Bayesian algorithm for the joint reconstruction and classification of reflectance confocal microscopy (RCM) images, with application to the identification of human skin lentigo. The proposed Bayesian approach takes advantage of the distribution of the multiplicative speckle noise affecting the true reflectivity of these images and of appropriate priors for the unknown model parameters. A Markov chain Monte Carlo (MCMC) algorithm is proposed to jointly estimate the model parameters and the image of true reflectivity while classifying images according to the distribution of their reflectivity. Precisely, a Metropolis-whitin-Gibbs sampler is investigated to sample the posterior distribution of the Bayesian model associated with RCM images and to build estimators of its parameters, including labels indicating the class of each RCM image. The resulting algorithm is applied to synthetic data and to real images from a clinical study containing healthy and lentigo patients.