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 Learning Graphical Models


An Intersectional Definition of Fairness

arXiv.org Machine Learning

With the rising influence of machine learning algorithms on many important aspects of our daily lives, there are growing concerns that biases inherent in data can lead the behavior of these algorithms to discriminate against certain populations [1, 2, 4, 6, 8, 28, 29, 15]. In recent years, substantial research effort has been devoted to the development of mathematical definitions of bias, or its opposite, fairness, in algorithms and in data [15, 18, 26, 23, 19, 32]. In this work, we focus on the fairness scenario where there are multiple protected attributes that we aim to ensure fairness for, and which may potentially overlap with each other, such as gender, race, and sexual orientation. Our guiding principle is intersectionality, the core theoretical framework underlying the thirdwave feminist movement [13]. The principle of intersectionality states that racism, sexism, and other social systems which harm marginalized groups are interlocking in their effects, such that the lived experience of, e.g., black women, is very different than that of, e.g., white women. Intersectionality was defined by Kimberlé Crenshaw in the 1980's [13] and popularized in the 1990's, e.g. by Patricia Hill Collins [10], although the ideas are much older [11, 35]. In the context of machine learning and fairness, intersectionality was recently considered by [7], who studied the impact of the intersection of gender and skin color on computer vision performance, and by [23, 19], who aimed to protect certain subgroups in order to prevent "fairness gerrymandering."


Probabilistic Graphical Modeling approach to dynamic PET direct parametric map estimation and image reconstruction

arXiv.org Machine Learning

In the context of dynamic emission tomography, the conventional processing pipeline consists of independent image reconstruction of single time frames, followed by the application of a suitable kinetic model to time activity curves (TACs) at the voxel or region-of-interest level. The relatively new field of 4D PET direct reconstruction, by contrast, seeks to move beyond this scheme and incorporate information from multiple time frames within the reconstruction task. Existing 4D direct models are based on a deterministic description of voxels' TACs, captured by the chosen kinetic model, considering the photon counting process the only source of uncertainty. In this work, we introduce a new probabilistic modeling strategy based on the key assumption that activity time course would be subject to uncertainty even if the parameters of the underlying dynamic process were known. This leads to a hierarchical Bayesian model, which we formulate using the formalism of Probabilistic Graphical Modeling (PGM). The inference of the joint probability density function arising from PGM is addressed using a new gradient-based iterative algorithm, which presents several advantages compared to existing direct methods: it is flexible to an arbitrary choice of linear and nonlinear kinetic model; it enables the inclusion of arbitrary (sub)differentiable priors for parametric maps; it is simpler to implement and suitable to integration in computing frameworks for machine learning. Computer simulations and an application to real patient scan showed how the proposed approach allows us to weight the importance of the kinetic model, providing a bridge between indirect and deterministic direct methods.


Unknown Examples & Machine Learning Model Generalization

arXiv.org Machine Learning

Over the past decades, researchers and ML practitioners have come up with better and better ways to build, understand and improve the quality of ML models, but mostly under the key assumption that the training data is distributed identically to the testing data. In many real-world applications, however, some potential training examples are unknown to the modeler, due to sample selection bias or, more generally, covariate shift, i.e., a distribution shift between the training and deployment stage. The resulting discrepancy between training and testing distributions leads to poor generalization performance of the ML model and hence biased predictions. We provide novel algorithms that estimate the number and properties of these unknown training examples---unknown unknowns. This information can then be used to correct the training set, prior to seeing any test data. The key idea is to combine species-estimation techniques with data-driven methods for estimating the feature values for the unknown unknowns. Experiments on a variety of ML models and datasets indicate that taking the unknown examples into account can yield a more robust ML model that generalizes better.


Learning End-to-End Goal-Oriented Dialog with Multiple Answers

arXiv.org Artificial Intelligence

In a dialog, there can be multiple valid next utterances at any point. The present end-to-end neural methods for dialog do not take this into account. They learn with the assumption that at any time there is only one correct next utterance. In this work, we focus on this problem in the goal-oriented dialog setting where there are different paths to reach a goal. We propose a new method, that uses a combination of supervised learning and reinforcement learning approaches to address this issue. We also propose a new and more effective testbed, permuted-bAbI dialog tasks, by introducing multiple valid next utterances to the original-bAbI dialog tasks, which allows evaluation of goal-oriented dialog systems in a more realistic setting. We show that there is a significant drop in performance of existing end-to-end neural methods from 81.5% per-dialog accuracy on original-bAbI dialog tasks to 30.3% on permuted-bAbI dialog tasks. We also show that our proposed method improves the performance and achieves 47.3% per-dialog accuracy on permuted-bAbI dialog tasks.


A Jointly Learned Context-Aware Place of Interest Embedding for Trip Recommendations

arXiv.org Machine Learning

Trip recommendation is an important location-based service that helps relieve users from the time and efforts for trip planning. It aims to recommend a sequence of places of interest (POIs) for a user to visit that maximizes the user's satisfaction. When adding a POI to a recommended trip, it is essential to understand the context of the recommendation, including the POI popularity, other POIs co-occurring in the trip, and the preferences of the user. These contextual factors are learned separately in existing studies, while in reality, they impact jointly on a user's choice of a POI to visit. In this study, we propose a POI embedding model to jointly learn the impact of these contextual factors. We call the learned POI embedding a context-aware POI embedding. To showcase the effectiveness of this embedding, we apply it to generate trip recommendations given a user and a time budget. We propose two trip recommendation algorithms based on our context-aware POI embedding. The first algorithm finds the exact optimal trip by transforming and solving the trip recommendation problem as an integer linear programming problem. To achieve a high computation efficiency, the second algorithm finds a heuristically optimal trip based on adaptive large neighborhood search. We perform extensive experiments on real datasets. The results show that our proposed algorithms consistently outperform state-of-the-art algorithms in trip recommendation quality, with an advantage of up to 43% in F1-score.


Predicting Extubation Readiness in Extreme Preterm Infants based on Patterns of Breathing

arXiv.org Machine Learning

Abstract-- Extremely preterm infants commonly require intubation and invasive mechanical ventilation after birth. While the duration of mechanical ventilation should be minimized in order to avoid complications, extubation failure is associated with increases in morbidities and mortality. As part of a prospective observational study aimed at developing an accurate predictor of extubation readiness, Markov and semi-Markov chain models were applied to gain insight into the respiratory patterns of these infants, with more robust timeseries modeling using semi-Markov models. This model revealed interesting similarities and differences between newborns who succeeded extubation and those who failed. The parameters of the model were further applied to predict extubation readiness via generative (joint likelihood) and discriminative (support vector machine) approaches. Results showed that up to 84% of infants who failed extubation could have been accurately identified prior to extubation.


Analysis of Noise Contrastive Estimation from the Perspective of Asymptotic Variance

arXiv.org Machine Learning

There are many models, often called unnormalized models, whose normalizing constants are not calculated in closed form. Maximum likelihood estimation is not directly applicable to unnormalized models. Score matching, contrastive divergence method, pseudo-likelihood, Monte Carlo maximum likelihood, and noise contrastive estimation (NCE) are popular methods for estimating parameters of such models. In this paper, we focus on NCE. The estimator derived from NCE is consistent and asymptotically normal because it is an M-estimator. NCE characteristically uses an auxiliary distribution to calculate the normalizing constant in the same spirit of the importance sampling. In addition, there are several candidates as objective functions of NCE. We focus on how to reduce asymptotic variance. First, we propose a method for reducing asymptotic variance by estimating the parameters of the auxiliary distribution. Then, we determine the form of the objective functions, where the asymptotic variance takes the smallest values in the original estimator class and the proposed estimator classes. We further analyze the robustness of the estimator.


A Semi-Markov Chain Approach to Modeling Respiratory Patterns Prior to Extubation in Preterm Infants

arXiv.org Machine Learning

After birth, extremely preterm infants often require specialized respiratory management in the form of invasive mechanical ventilation (IMV). Protracted IMV is associated with detrimental outcomes and morbidities. Premature extubation, on the other hand, would necessitate reintubation which is risky, technically challenging and could further lead to lung injury or disease. We present an approach to modeling respiratory patterns of infants who succeeded extubation and those who required reintubation which relies on Markov models. We compare the use of traditional Markov chains to semi-Markov models which emphasize cross-pattern transitions and timing information, and to multi-chain Markov models which can concisely represent non-stationarity in respiratory behavior over time. The models we developed expose specific, unique similarities as well as vital differences between the two populations.


Learning to Importance Sample in Primary Sample Space

arXiv.org Machine Learning

Importance sampling is one of the most widely used variance reduction strategies in Monte Carlo rendering. In this paper, we propose a novel importance sampling technique that uses a neural network to learn how to sample from a desired density represented by a set of samples. Our approach considers an existing Monte Carlo rendering algorithm as a black box. During a scene-dependent training phase, we learn to generate samples with a desired density in the primary sample space of the rendering algorithm using maximum likelihood estimation. We leverage a recent neural network architecture that was designed to represent real-valued non-volume preserving ('Real NVP') transformations in high dimensional spaces. We use Real NVP to non-linearly warp primary sample space and obtain desired densities. In addition, Real NVP efficiently computes the determinant of the Jacobian of the warp, which is required to implement the change of integration variables implied by the warp. A main advantage of our approach is that it is agnostic of underlying light transport effects, and can be combined with many existing rendering techniques by treating them as a black box. We show that our approach leads to effective variance reduction in several practical scenarios.


Inferring Multiplex Diffusion Network via Multivariate Marked Hawkes Process

arXiv.org Machine Learning

Understanding the diffusion in social network is an important task. However, this task is challenging since (1) the network structure is usually hidden with only observations of events like "post" or "repost" associated with each node, and (2) the interactions between nodes encompass multiple distinct patterns which in turn affect the diffusion patterns. For instance, social interactions seldom develop on a single channel, and multiple relationships can bind pairs of people due to their various common interests. Most previous work considers only one of these two challenges which is apparently unrealistic. In this paper, we study the problem of \emph{inferring multiplex network} in social networks. We propose the Multiplex Diffusion Model (MDM) which incorporates the multivariate marked Hawkes process and topic model to infer the multiplex structure of social network. A MCMC based algorithm is developed to infer the latent multiplex structure and to estimate the node-related parameters. We evaluate our model based on both synthetic and real-world datasets. The results show that our model is more effective in terms of uncovering the multiplex network structure.