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 Learning Graphical Models


Approximating the Ideal Observer and Hotelling Observer for binary signal detection tasks by use of supervised learning methods

arXiv.org Machine Learning

It is widely accepted that optimization of medical imaging system performance should be guided by task-based measures of image quality (IQ). Task-based measures of IQ quantify the ability of an observer to perform a specific task such as detection or estimation of a signal (e.g., a tumor). For binary signal detection tasks, the Bayesian Ideal Observer (IO) sets an upper limit of observer performance and has been advocated for use in optimizing medical imaging systems and data-acquisition designs. Except in special cases, determination of the IO test statistic is analytically intractable. Markov-chain Monte Carlo (MCMC) techniques can be employed to approximate IO detection performance, but their reported applications have been limited to relatively simple object models. In cases where the IO test statistic is difficult to compute, the Hotelling Observer (HO) can be employed. To compute the HO test statistic, potentially large covariance matrices must be accurately estimated and subsequently inverted, which can present computational challenges. This work investigates supervised learning-based methodologies for approximating the IO and HO test statistics. Convolutional neural networks (CNNs) and single-layer neural networks (SLNNs) are employed to approximate the IO and HO test statistics, respectively. Numerical simulations were conducted for both signal-known-exactly (SKE) and signal-known-statistically (SKS) signal detection tasks. The performances of the supervised learning methods are assessed via receiver operating characteristic (ROC) analysis and the results are compared to those produced by use of traditional numerical methods or analytical calculations when feasible. The potential advantages of the proposed supervised learning approaches for approximating the IO and HO test statistics are discussed.


Multi-scale Dynamic Graph Convolutional Network for Hyperspectral Image Classification

arXiv.org Machine Learning

Convolutional Neural Network (CNN) has demonstrated impressive ability to represent hyperspectral images and to achieve promising results in hyperspectral image classification. However, traditional CNN models can only operate convolution on regular square image regions with fixed size and weights, so they cannot universally adapt to the distinct local regions with various object distributions and geometric appearances. Therefore, their classification performances are still to be improved, especially in class boundaries. To alleviate this shortcoming, we consider employing the recently proposed Graph Convolutional Network (GCN) for hyperspectral image classification, as it can conduct the convolution on arbitrarily structured non-Euclidean data and is applicable to the irregular image regions represented by graph topological information. Different from the commonly used GCN models which work on a fixed graph, we enable the graph to be dynamically updated along with the graph convolution process, so that these two steps can be benefited from each other to gradually produce the discriminative embedded features as well as a refined graph. Moreover, to comprehensively deploy the multi-scale information inherited by hyperspectral images, we establish multiple input graphs with different neighborhood scales to extensively exploit the diversified spectral-spatial correlations at multiple scales. Therefore, our method is termed 'Multi-scale Dynamic Graph Convolutional Network' (MDGCN). The experimental results on three typical benchmark datasets firmly demonstrate the superiority of the proposed MDGCN to other state-of-the-art methods in both qualitative and quantitative aspects.


Approximate Bayesian computation via the energy statistic

arXiv.org Machine Learning

Approximate Bayesian computation (ABC) has become an essential part of the Bayesian toolbox for addressing problems in which the likelihood is prohibitively expensive or entirely unknown, making it intractable. ABC defines a quasi-posterior by comparing observed data with simulated data, traditionally based on some summary statistics, the elicitation of which is regarded as a key difficulty. In recent years, a number of data discrepancy measures bypassing the construction of summary statistics have been proposed, including the Kullback--Leibler divergence, the Wasserstein distance and maximum mean discrepancies. Here we propose a novel importance-sampling (IS) ABC algorithm relying on the so-called \textit{two-sample energy statistic}. We establish a new asymptotic result for the case where both the observed sample size and the simulated data sample size increase to infinity, which highlights to what extent the data discrepancy measure impacts the asymptotic pseudo-posterior. The result holds in the broad setting of IS-ABC methodologies, thus generalizing previous results that have been established only for rejection ABC algorithms. Furthermore, we propose a consistent V-statistic estimator of the energy statistic, under which we show that the large sample result holds. Our proposed energy statistic based ABC algorithm is demonstrated on a variety of models, including a Gaussian mixture, a moving-average model of order two, a bivariate beta and a multivariate $g$-and-$k$ distribution. We find that our proposed method compares well with alternative discrepancy measures.


Stochastic Blockmodels meet Graph Neural Networks

arXiv.org Machine Learning

Stochastic blockmodels (SBM) and their variants, $e.g.$, mixed-membership and overlapping stochastic blockmodels, are latent variable based generative models for graphs. They have proven to be successful for various tasks, such as discovering the community structure and link prediction on graph-structured data. Recently, graph neural networks, $e.g.$, graph convolutional networks, have also emerged as a promising approach to learn powerful representations (embeddings) for the nodes in the graph, by exploiting graph properties such as locality and invariance. In this work, we unify these two directions by developing a \emph{sparse} variational autoencoder for graphs, that retains the interpretability of SBMs, while also enjoying the excellent predictive performance of graph neural nets. Moreover, our framework is accompanied by a fast recognition model that enables fast inference of the node embeddings (which are of independent interest for inference in SBM and its variants). Although we develop this framework for a particular type of SBM, namely the \emph{overlapping} stochastic blockmodel, the proposed framework can be adapted readily for other types of SBMs. Experimental results on several benchmarks demonstrate encouraging results on link prediction while learning an interpretable latent structure that can be used for community discovery.


NGO-GM: Natural Gradient Optimization for Graphical Models

arXiv.org Machine Learning

This paper deals with estimating model parameters in graphical models. We reformulate it as an information geometric optimization problem and introduce a natural gradient descent strategy that incorporates additional meta parameters. We show that our approach is a strong alternative to the celebrated EM approach for learning in graphical models. Actually, our natural gradient based strategy leads to learning optimal parameters for the final objective function without artificially trying to fit a distribution that may not correspond to the real one. We support our theoretical findings with the question of trend detection in financial markets and show that the learned model performs better than traditional practitioner methods and is less prone to overfitting.


Convolutional Poisson Gamma Belief Network

arXiv.org Machine Learning

For text analysis, one often resorts to a lossy representation that either completely ignores word order or embeds each word as a low-dimensional dense feature vector. In this paper, we propose convolutional Poisson factor analysis (CPFA) that directly operates on a lossless representation that processes the words in each document as a sequence of high-dimensional one-hot vectors. To boost its performance, we further propose the convolutional Poisson gamma belief network (CPGBN) that couples CPFA with the gamma belief network via a novel probabilistic pooling layer. CPFA forms words into phrases and captures very specific phrase-level topics, and CPGBN further builds a hierarchy of increasingly more general phrase-level topics. For efficient inference, we develop both a Gibbs sampler and a Weibull distribution based convolutional variational auto-encoder. Experimental results demonstrate that CPGBN can extract high-quality text latent representations that capture the word order information, and hence can be leveraged as a building block to enrich a wide variety of existing latent variable models that ignore word order.


A Statistically Principled and Computationally Efficient Approach to Speech Enhancement using Variational Autoencoders

arXiv.org Machine Learning

Recent studies have explored the use of deep generative models of speech spectra based of variational autoencoders (VAEs), combined with unsupervised noise models, to perform speech enhancement. These studies developed iterative algorithms involving either Gibbs sampling or gradient descent at each step, making them computationally expensive. This paper proposes a variational inference method to iteratively estimate the power spectrogram of the clean speech. Our main contribution is the analytical derivation of the variational steps in which the en-coder of the pre-learned VAE can be used to estimate the varia-tional approximation of the true posterior distribution, using the very same assumption made to train VAEs. Experiments show that the proposed method produces results on par with the afore-mentioned iterative methods using sampling, while decreasing the computational cost by a factor 36 to reach a given performance .


Generating Weighted MAX-2-SAT Instances of Tunable Difficulty with Frustrated Loops

arXiv.org Machine Learning

Many optimization problems can be cast into the maximum satisfiability (MAX-SAT) form, and many solvers have been developed for tackling such problems. To evaluate the performance of a MAX-SAT solver, it is convenient to generate difficult MAX-SAT instances with solutions known in advance. Here, we propose a method of generating weighted MAX-2-SAT instances inspired by the frustrated-loop algorithm used by the quantum annealing community to generate Ising spin-glass instances with nearest-neighbor coupling. Our algorithm is extended to instances whose underlying coupling graph is general, though we focus here on the case of bipartite coupling, with the associated energy being the restricted Boltzmann machine (RBM) energy. It is shown that any MAX-2-SAT problem can be reduced to the problem of minimizing an RBM energy over the nodal values. The algorithm is designed such that the difficulty of the generated instances can be tuned through a central parameter known as the frustration index. Two versions of the algorithm are presented: the random- and structured-loop algorithms. For the random-loop algorithm, we provide a thorough theoretical and empirical analysis on its mathematical properties from the perspective of frustration, and observe empirically, using simulated annealing, a double phase transition behavior in the difficulty scaling behavior driven by the frustration index. For the structured-loop algorithm, we show that it offers an improvement in difficulty of the generated instances over the random-loop algorithm, with the improvement factor scaling super-exponentially with respect to the frustration index for instances at high loop density. At the end of the paper, we provide a brief discussion of the relevance of this work to the pre-training of RBMs.


Classification of Perceived Human Stress using Physiological Signals

arXiv.org Machine Learning

In this paper, we present an experimental study for the classification of perceived human stress using non-invasive physiological signals. These include electroencephalography (EEG), galvanic skin response (GSR), and photoplethysmography (PPG). We conducted experiments consisting of steps including data acquisition, feature extraction, and perceived human stress classification. The physiological data of $28$ participants are acquired in an open eye condition for a duration of three minutes. Four different features are extracted in time domain from EEG, GSR and PPG signals and classification is performed using multiple classifiers including support vector machine, the Naive Bayes, and multi-layer perceptron (MLP). The best classification accuracy of 75% is achieved by using MLP classifier. Our experimental results have shown that our proposed scheme outperforms existing perceived stress classification methods, where no stress inducers are used.


Learning to Search Efficiently Using Comparisons

arXiv.org Machine Learning

We consider the problem of searching in a set of items by using pairwise comparisons. We aim to locate a target item $t$ by asking an oracle questions of the form "Which item from the pair $(i,j)$ is more similar to t?". We assume a blind setting, where no item features are available to guide the search process; only the oracle sees the features in order to generate an answer. Previous approaches for this problem either assume noiseless answers, or they scale poorly in the number of items, both of which preclude practical applications. In this paper, we present a new scalable learning framework called learn2search that performs efficient comparison-based search on a set of items despite the presence of noise in the answers. Items live in a space of latent features, and we posit a probabilistic model for the oracle comparing two items $i$ and $j$ with respect to a target $t$. Our algorithm maintains its own representation of the space of items, which it learns incrementally based on past searches. We evaluate the performance of learn2search on both synthetic and real-world data, and show that it learns to search more and more efficiently, over time matching the performance of a scheme with access to the item features.