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 Learning Graphical Models


Clustering of non-Gaussian data by variational Bayes for normal inverse Gaussian mixture models

arXiv.org Machine Learning

Finite mixture models, typically Gaussian mixtures, are well known and widely used as model-based clustering. In practical situations, there are many non-Gaussian data that are heavy-tailed and/or asymmetric. Normal inverse Gaussian (NIG) distributions are normal-variance mean which mixing densities are inverse Gaussian distributions and can be used for both haavy-tail and asymmetry. For NIG mixture models, both expectation-maximization method and variational Bayesian (VB) algorithms have been proposed. However, the existing VB algorithm for NIG mixture have a disadvantage that the shape of the mixing density is limited. In this paper, we propose another VB algorithm for NIG mixture that improves on the shortcomings. We also propose an extension of Dirichlet process mixture models to overcome the difficulty in determining the number of clusters in finite mixture models. We evaluated the performance with artificial data and found that it outperformed Gaussian mixtures and existing implementations for NIG mixtures, especially for highly non-normative data.


Oracle-Efficient Reinforcement Learning in Factored MDPs with Unknown Structure

arXiv.org Machine Learning

We consider provably-efficient reinforcement learning (RL) in non-episodic factored Markov decision processes (FMDPs). All previous algorithms for regret minimization in this setting made the strong assumption that the factored structure of the FMDP is known to the learner in advance. In this paper, we provide the first provably-efficient algorithm that has to learn the structure of the FMDP while minimizing its regret. Our algorithm is based on the optimism in face of uncertainty principle, combined with a simple statistical method for structure learning, and can be implemented efficiently given oracle-access to an FMDP planner. It maintains its computational efficiency even though the number of possible structures is exponential.


Is there a role for statistics in artificial intelligence?

arXiv.org Artificial Intelligence

The research on and application of artificial intelligence (AI) has triggered a comprehensive scientific, economic, social and political discussion. Here we argue that statistics, as an interdisciplinary scientific field, plays a substantial role both for the theoretical and practical understanding of AI and for its future development. Statistics might even be considered a core element of AI. With its specialist knowledge of data evaluation, starting with the precise formulation of the research question and passing through a study design stage on to analysis and interpretation of the results, statistics is a natural partner for other disciplines in teaching, research and practice. This paper aims at contributing to the current discussion by highlighting the relevance of statistical methodology in the context of AI development. In particular, we discuss contributions of statistics to the field of artificial intelligence concerning methodological development, planning and design of studies, assessment of data quality and data collection, differentiation of causality and associations and assessment of uncertainty in results. Moreover, the paper also deals with the equally necessary and meaningful extension of curricula in schools and universities.


Information Laundering for Model Privacy

arXiv.org Artificial Intelligence

In this work, we propose information laundering, a novel framework for enhancing model privacy. Unlike data privacy that concerns the protection of raw data information, model privacy aims to protect an already-learned model that is to be deployed for public use. The private model can be obtained from general learning methods, and its deployment means that it will return a deterministic or random response for a given input query. An informationlaundered model consists of probabilistic components that deliberately maneuver the intended input and output for queries to the model, so the model's adversarial acquisition is less likely. Under the proposed framework, we develop an information-theoretic principle to quantify the fundamental tradeoffs between model utility and privacy leakage and derive the optimal design. An emerging number of applications involve the following user-scenario. Alice developed a model that takes a specific query as input and calculates a response as output. The model is a stochastic black-box that may represent a novel type of ensemble models, a known deep neural network architecture with sophisticated parameter tuning, or a physical law described by stochastic differential equations.


Tracking disease outbreaks from sparse data with Bayesian inference

arXiv.org Artificial Intelligence

The COVID-19 pandemic provides new motivation for a classic problem in epidemiology: estimating the empirical rate of transmission during an outbreak (formally, the time-varying reproduction number) from case counts. While standard methods exist, they work best at coarse-grained national or state scales with abundant data, and struggle to accommodate the partial observability and sparse data common at finer scales (e.g., individual schools or towns). For example, case counts may be sparse when only a small fraction of infections are caught by a testing program. Or, whether an infected individual tests positive may depend on the kind of test and the point in time when they are tested. We propose a Bayesian framework which accommodates partial observability in a principled manner. Our model places a Gaussian process prior over the unknown reproduction number at each time step and models observations sampled from the distribution of a specific testing program. For example, our framework can accommodate a variety of kinds of tests (viral RNA, antibody, antigen, etc.) and sampling schemes (e.g., longitudinal or cross-sectional screening). Inference in this framework is complicated by the presence of tens or hundreds of thousands of discrete latent variables. To address this challenge, we propose an efficient stochastic variational inference method which relies on a novel gradient estimator for the variational objective. Experimental results for an example motivated by COVID-19 show that our method produces an accurate and well-calibrated posterior, while standard methods for estimating the reproduction number can fail badly.


Supervised Learning with Projected Entangled Pair States

arXiv.org Machine Learning

Tensor networks, a model that originated from quantum physics, has been gradually generalized as efficient models in machine learning in recent years. However, in order to achieve exact contraction, only tree-like tensor networks such as the matrix product states and tree tensor networks have been considered, even for modeling two-dimensional data such as images. In this work, we construct supervised learning models for images using the projected entangled pair states (PEPS), a two-dimensional tensor network having a similar structure prior to natural images. Our approach first performs a feature map, which transforms the image data to a product state on a grid, then contracts the product state to a PEPS with trainable parameters to predict image labels. The tensor elements of PEPS are trained by minimizing differences between training labels and predicted labels. The proposed model is evaluated on image classifications using the MNIST and the Fashion-MNIST datasets. We show that our model is significantly superior to existing models using tree-like tensor networks. Moreover, using the same input features, our method performs as well as the multilayer perceptron classifier, but with much fewer parameters and is more stable. Our results shed light on potential applications of two-dimensional tensor network models in machine learning.


Machine Learning Against Cancer: Accurate Diagnosis of Cancer by Machine Learning Classification of the Whole Genome Sequencing Data

arXiv.org Machine Learning

Machine learning can precisely identify different cancer tumors at any stage by classifying cancerous and healthy samples based on their genomic profile. We have developed novel methods of MLAC (Machine Learning Against Cancer) achieving perfect results with perfect precision, sensitivity, and specificity. We have used the whole genome sequencing data acquired by next-generation RNA sequencing techniques in The Cancer Genome Atlas and Genotype-Tissue Expression projects for cancerous and healthy tissues respectively. Moreover, we have shown that unsupervised machine learning clustering has great potential to be used for cancer diagnosis. Indeed, a creative way to work with data and general algorithms has resulted in perfect classification i.e. all precision, sensitivity, and specificity are equal to 1 for most of the different tumor types even with a modest amount of data, and the same method works well on a series of cancers and results in great clustering of cancerous and healthy samples too. Our system can be used in practice because once the classifier is trained, it can be used to classify any new sample of new potential patients. One advantage of our work is that the aforementioned perfect precision and recall are obtained on samples of all stages including very early stages of cancer; therefore, it is a promising tool for diagnosis of cancers in early stages. Another advantage of our novel model is that it works with normalized values of RNA sequencing data, hence people's private sensitive medical data will remain hidden, protected, and safe. This type of analysis will be widespread and economical in the future and people can even learn to receive their RNA sequencing data and do their own preliminary cancer studies themselves which have the potential to help the healthcare systems. It is a great step forward toward good health that is the main base of sustainable societies.


Bayesian Meta-Learning Is All You Need

#artificialintelligence

Update: This post is part of a blog series on Meta-Learning that I'm working on. Check out part 1 and part 2. In my previous post, "Meta-Learning Is All You Need," I discussed the motivation for the meta-learning paradigm, explained the mathematical underpinning, and reviewed the three approaches to design a meta-learning algorithm (namely, black-box, optimization-based, and non-parametric). I also mentioned in the post that there are two views of the meta-learning problem: a deterministic view and a probabilistic view, according to Chelsea Finn. Note: The content of this post is primarily based on CS330's lecture 5 on Bayesian meta-learning. It is accessible to the public.


Embodied Visual Navigation with Automatic Curriculum Learning in Real Environments

arXiv.org Artificial Intelligence

We present NavACL, a method of automatic curriculum learning tailored to the navigation task. NavACL is simple to train and efficiently selects relevant tasks using geometric features. In our experiments, deep reinforcement learning agents trained using NavACL in collision-free environments significantly outperform state-of-the-art agents trained with uniform sampling -- the current standard. Furthermore, our agents are able to navigate through unknown cluttered indoor environments to semantically-specified targets using only RGB images. Collision avoidance policies and frozen feature networks support transfer to unseen real-world environments, without any modification or retraining requirements. We evaluate our policies in simulation, and in the real world on a ground robot and a quadrotor drone. Videos of real-world results are available in the supplementary material


Large-scale empirical validation of Bayesian Network structure learning algorithms with noisy data

arXiv.org Artificial Intelligence

Numerous Bayesian Network (BN) structure learning algorithms have been proposed in the literature over the past few decades. Each publication makes an empirical or theoretical case for the algorithm proposed in that publication and results across studies are often inconsistent in their claims about which algorithm is 'best'. This is partly because there is no agreed evaluation approach to determine their effectiveness. Moreover, each algorithm is based on a set of assumptions, such as complete data and causal sufficiency, and tend to be evaluated with data that conforms to these assumptions, however unrealistic these assumptions may be in the real world. As a result, it is widely accepted that synthetic performance overestimates real performance, although to what degree this may happen remains unknown. This paper investigates the performance of 15 structure learning algorithms. We propose a methodology that applies the algorithms to data that incorporates synthetic noise, in an effort to better understand the performance of structure learning algorithms when applied to real data. Each algorithm is tested over multiple case studies, sample sizes, types of noise, and assessed with multiple evaluation criteria. This work involved approximately 10,000 graphs with a total structure learning runtime of seven months. It provides the first large-scale empirical validation of BN structure learning algorithms under different assumptions of data noise. The results suggest that traditional synthetic performance may overestimate real-world performance by anywhere between 10% and more than 50%. They also show that while score-based learning is generally superior to constraint-based learning, a higher fitting score does not necessarily imply a more accurate causal graph. To facilitate comparisons with future studies, we have made all data, raw results, graphs and BN models freely available online.