Learning Graphical Models
Leveraging Structured Biological Knowledge for Counterfactual Inference: a Case Study of Viral Pathogenesis
Zucker, Jeremy, Paneri, Kaushal, Mohammad-Taheri, Sara, Bhargava, Somya, Kolambkar, Pallavi, Bakker, Craig, Teuton, Jeremy, Hoyt, Charles Tapley, Oxford, Kristie, Ness, Robert, Vitek, Olga
Counterfactual inference is a useful tool for comparing outcomes of interventions on complex systems. It requires us to represent the system in form of a structural causal model, complete with a causal diagram, probabilistic assumptions on exogenous variables, and functional assignments. Specifying such models can be extremely difficult in practice. The process requires substantial domain expertise, and does not scale easily to large systems, multiple systems, or novel system modifications. At the same time, many application domains, such as molecular biology, are rich in structured causal knowledge that is qualitative in nature. This manuscript proposes a general approach for querying a causal biological knowledge graph, and converting the qualitative result into a quantitative structural causal model that can learn from data to answer the question. We demonstrate the feasibility, accuracy and versatility of this approach using two case studies in systems biology. The first demonstrates the appropriateness of the underlying assumptions and the accuracy of the results. The second demonstrates the versatility of the approach by querying a knowledge base for the molecular determinants of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-induced cytokine storm, and performing counterfactual inference to estimate the causal effect of medical countermeasures for severely ill patients.
Video action recognition for lane-change classification and prediction of surrounding vehicles
Biparva, Mahdi, Fernández-Llorca, David, Izquierdo-Gonzalo, Rubén, Tsotsos, John K.
In highway scenarios, an alert human driver will typically anticipate early cut-in/cut-out maneuvers of surrounding vehicles using visual cues mainly. Autonomous vehicles must anticipate these situations at an early stage too, to increase their safety and efficiency. In this work, lane-change recognition and prediction tasks are posed as video action recognition problems. Up to four different two-stream-based approaches, that have been successfully applied to address human action recognition, are adapted here by stacking visual cues from forward-looking video cameras to recognize and anticipate lane-changes of target vehicles. We study the influence of context and observation horizons on performance, and different prediction horizons are analyzed. The different models are trained and evaluated using the PREVENTION dataset. The obtained results clearly demonstrate the potential of these methodologies to serve as robust predictors of future lane-changes of surrounding vehicles proving an accuracy higher than 90% in time horizons of between 1-2 seconds.
Is the User Enjoying the Conversation? A Case Study on the Impact on the Reward Function
The impact of user satisfaction in policy learning task-oriented dialogue systems has long been a subject of research interest. Most current models for estimating the user satisfaction either (i) treat out-of-context short-texts, such as product reviews, or (ii) rely on turn features instead of on distributed semantic representations. In this work we adopt deep neural networks that use distributed semantic representation learning for estimating the user satisfaction in conversations. We evaluate the impact of modelling context length in these networks. Moreover, we show that the proposed hierarchical network outperforms state-of-the-art quality estimators. Furthermore, we show that applying these networks to infer the reward function in a Partial Observable Markov Decision Process (POMDP) yields to a great improvement in the task success rate.
Should Ensemble Members Be Calibrated?
Underlying the use of statistical approaches for a wide range of applications is the assumption that the probabilities obtained from a statistical model are representative of the "true" probability that event, or outcome, will occur. Unfortunately, for modern deep neural networks this is not the case, they are often observed to be poorly calibrated. Additionally, these deep learning approaches make use of large numbers of model parameters, motivating the use of Bayesian, or ensemble approximation, approaches to handle issues with parameter estimation. This paper explores the application of calibration schemes to deep ensembles from both a theoretical perspective and empirically on a standard image classification task, CIFAR-100. The underlying theoretical requirements for calibration, and associated calibration criteria, are first described. It is shown that well calibrated ensemble members will not necessarily yield a well calibrated ensemble prediction, and if the ensemble prediction is well calibrated its performance cannot exceed that of the average performance of the calibrated ensemble members. On CIFAR-100 the impact of calibration for ensemble prediction, and associated calibration is evaluated. Additionally the situation where multiple different topologies are combined together is discussed.
X-CAL: Explicit Calibration for Survival Analysis
Goldstein, Mark, Han, Xintian, Puli, Aahlad, Perotte, Adler J., Ranganath, Rajesh
Survival analysis models the distribution of time until an event of interest, such as discharge from the hospital or admission to the ICU. When a model's predicted number of events within any time interval is similar to the observed number, it is called well-calibrated. A survival model's calibration can be measured using, for instance, distributional calibration (D-CALIBRATION) [Haider et al., 2020] which computes the squared difference between the observed and predicted number of events within different time intervals. Classically, calibration is addressed in post-training analysis. We develop explicit calibration (X-CAL), which turns D-CALIBRATION into a differentiable objective that can be used in survival modeling alongside maximum likelihood estimation and other objectives. X-CAL allows practitioners to directly optimize calibration and strike a desired balance between predictive power and calibration. In our experiments, we fit a variety of shallow and deep models on simulated data, a survival dataset based on MNIST, on length-of-stay prediction using MIMIC-III data, and on brain cancer data from The Cancer Genome Atlas. We show that the models we study can be miscalibrated. We give experimental evidence on these datasets that X-CAL improves D-CALIBRATION without a large decrease in concordance or likelihood.
Denoising Score Matching with Random Fourier Features
Olga, Tsimboy, Kapushev, Yermek, Burnaev, Evgeny, Oseledets, Ivan
The density estimation is one of the core problems in statistics. Despite this, existing techniques like maximum likelihood estimation are computationally inefficient due to the intractability of the normalizing constant. For this reason an interest to score matching has increased being independent on the normalizing constant. However, such estimator is consistent only for distributions with the full space support. One of the approaches to make it consistent is to add noise to the input data which is called Denoising Score Matching. In this work we derive analytical expression for the Denoising Score matching using the Kernel Exponential Family as a model distribution. The usage of the kernel exponential family is motivated by the richness of this class of densities. To tackle the computational complexity we use Random Fourier Features based approximation of the kernel function. The analytical expression allows to drop additional regularization terms based on the higher-order derivatives as they are already implicitly included. Moreover, the obtained expression explicitly depends on the noise variance, so the validation loss can be straightforwardly used to tune the noise level. Along with benchmark experiments, the model was tested on various synthetic distributions to study the behaviour of the model in different cases. The empirical study shows comparable quality to the competing approaches, while the proposed method being computationally faster. The latter one enables scaling up to complex high-dimensional data.
Scalable Anytime Planning for Multi-Agent MDPs
Choudhury, Shushman, Gupta, Jayesh K., Morales, Peter, Kochenderfer, Mykel J.
We present a scalable tree search planning algorithm for large multi-agent sequential decision problems that require dynamic collaboration. Teams of agents need to coordinate decisions in many domains, but naive approaches fail due to the exponential growth of the joint action space with the number of agents. We circumvent this complexity through an anytime approach that allows us to trade computation for approximation quality and also dynamically coordinate actions. Our algorithm comprises three elements: online planning with Monte Carlo Tree Search (MCTS), factored representations of local agent interactions with coordination graphs, and the iterative Max-Plus method for joint action selection. We evaluate our approach on the benchmark SysAdmin domain with static coordination graphs and achieve comparable performance with much lower computation cost than our MCTS baselines. We also introduce a multi-drone delivery domain with dynamic, i.e., state-dependent coordination graphs, and demonstrate how our approach scales to large problems on this domain that are intractable for other MCTS methods. We provide an open-source implementation of our algorithm at https://github.com/JuliaPOMDP/FactoredValueMCTS.jl.
A Unified Framework for Online Trip Destination Prediction
Eberstein, Victor, Sjöblom, Jonas, Murgovski, Nikolce, Chehreghani, Morteza Haghir
Trip destination prediction is an area of increasing importance in many applications such as trip planning, autonomous driving and electric vehicles. Even though this problem could be naturally addressed in an online learning paradigm where data is arriving in a sequential fashion, the majority of research has rather considered the offline setting. In this paper, we present a unified framework for trip destination prediction in an online setting, which is suitable for both online training and online prediction. For this purpose, we develop two clustering algorithms and integrate them within two online prediction models for this problem. We investigate the different configurations of clustering algorithms and prediction models on a real-world dataset. By using traditional clustering metrics and accuracy, we demonstrate that both the clustering and the entire framework yield consistent results compared to the offline setting. Finally, we propose a novel regret metric for evaluating the entire online framework in comparison to its offline counterpart. This metric makes it possible to relate the source of erroneous predictions to either the clustering or the prediction model. Using this metric, we show that the proposed methods converge to a probability distribution resembling the true underlying distribution and enjoy a lower regret than all of the baselines.
Socially Responsible AI Algorithms: Issues, Purposes, and Challenges
Cheng, Lu, Varshney, Kush R., Liu, Huan
In the current era, people and society have grown increasingly reliant on Artificial Intelligence (AI) technologies. AI has the potential to drive us towards a future in which all of humanity flourishes. It also comes with substantial risks for oppression and calamity. Discussions about whether we should (re)trust AI have repeatedly emerged in recent years and in many quarters, including industry, academia, health care, services, and so on. Technologists and AI researchers have a responsibility to develop trustworthy AI systems. They have responded with great efforts of designing more responsible AI algorithms. However, existing technical solutions are narrow in scope and have been primarily directed towards algorithms for scoring or classification tasks, with an emphasis on fairness and unwanted bias. To build long-lasting trust between AI and human beings, we argue that the key is to think beyond algorithmic fairness and connect major aspects of AI that potentially cause AI's indifferent behavior. In this survey, we provide a systematic framework of Socially Responsible AI Algorithms that aims to examine the subjects of AI indifference and the need for socially responsible AI algorithms, define the objectives, and introduce the means by which we may achieve these objectives. We further discuss how to leverage this framework to improve societal well-being through protection, information, and prevention/mitigation.
Educational Content Linking for Enhancing Learning Need Remediation in MOOCs
Since its introduction in 2011, there have been over 4000 MOOCs on various subjects on the Web, serving over 35 million learners. MOOCs have shown the ability to democratize knowledge dissemination and bring the best education in the world to every learner. However, the disparate distances between participants, the size of the learner population, and the heterogeneity of the learners' backgrounds make it extremely difficult for instructors to interact with the learners in a timely manner, which adversely affects learning experience. To address the challenges, in this thesis, we propose a framework: educational content linking. By linking and organizing pieces of learning content scattered in various course materials into an easily accessible structure, we hypothesize that this framework can provide learners guidance and improve content navigation. Since most instruction and knowledge acquisition in MOOCs takes place when learners are surveying course materials, better content navigation may help learners find supporting information to resolve their confusion and thus improve learning outcome and experience. To support our conjecture, we present end-to-end studies to investigate our framework around two research questions: 1) can manually generated linking improve learning? 2) can learning content be generated with machine learning methods? For studying the first question, we built an interface that present learning materials and visualize the linking among them simultaneously. We found the interface enables users to search for desired course materials more efficiently, and retain more concepts more readily. For the second question, we propose an automatic content linking algorithm based on conditional random fields. We demonstrate that automatically generated linking can still lead to better learning, although the magnitude of the improvement over the unlinked interface is smaller.