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 Learning Graphical Models


Dream to Explore: Adaptive Simulations for Autonomous Systems

arXiv.org Artificial Intelligence

One's ability to learn a generative model of the world without supervision depends on the extent to which one can construct abstract knowledge representations that generalize across experiences. To this end, capturing an accurate statistical structure from observational data provides useful inductive biases that can be transferred to novel environments. Here, we tackle the problem of learning to control dynamical systems by applying Bayesian nonparametric methods, which is applied to solve visual servoing tasks. This is accomplished by first learning a state space representation, then inferring environmental dynamics and improving the policies through imagined future trajectories. Bayesian nonparametric models provide automatic model adaptation, which not only combats underfitting and overfitting, but also allows the model's unbounded dimension to be both flexible and computationally tractable. By employing Gaussian processes to discover latent world dynamics, we mitigate common data efficiency issues observed in reinforcement learning and avoid introducing explicit model bias by describing the system's dynamics. Our algorithm jointly learns a world model and policy by optimizing a variational lower bound of a log-likelihood with respect to the expected free energy minimization objective function. Finally, we compare the performance of our model with the state-of-the-art alternatives for continuous control tasks in simulated environments.


Scalable Bayesian Network Structure Learning with Splines

arXiv.org Machine Learning

A Bayesian Network (BN) is a probabilistic graphical model consisting of a directed acyclic graph (DAG), where each node is a random variable represented as a function of its parents. We present a novel approach capable of learning the global DAG structure of a BN and modelling linear and non-linear local relationships between variables. We achieve this by a combination of feature selection to reduce the search space for local relationships, and extending the widely used score-and-search approach to support modelling relationships between variables as Multivariate Adaptive Regression Splines (MARS). MARS are polynomial regression models represented as piecewise spline functions - this lets us model non-linear relationships without the risk of overfitting that a single polynomial regression model would bring. The combination allows us to learn relationships in all bnlearn benchmark instances within minutes and enables us to scale to networks of over a thousand nodes


Entropy-based adaptive Hamiltonian Monte Carlo

arXiv.org Machine Learning

Hamiltonian Monte Carlo (HMC) is a popular Markov Chain Monte Carlo (MCMC) algorithm to sample from an unnormalized probability distribution. A leapfrog integrator is commonly used to implement HMC in practice, but its performance can be sensitive to the choice of mass matrix used therein. We develop a gradient-based algorithm that allows for the adaptation of the mass matrix by encouraging the leapfrog integrator to have high acceptance rates while also exploring all dimensions jointly. In contrast to previous work that adapt the hyperparameters of HMC using some form of expected squared jumping distance, the adaptation strategy suggested here aims to increase sampling efficiency by maximizing an approximation of the proposal entropy. We illustrate that using multiple gradients in the HMC proposal can be beneficial compared to a single gradient-step in Metropolis-adjusted Langevin proposals. Empirical evidence suggests that the adaptation method can outperform different versions of HMC schemes by adjusting the mass matrix to the geometry of the target distribution and by providing some control on the integration time.


Spike-and-Slab Generalized Additive Models and Scalable Algorithms for High-Dimensional Data

arXiv.org Machine Learning

There are proposals that extend the classical generalized additive models (GAMs) to accommodate high-dimensional data ($p>>n$) using group sparse regularization. However, the sparse regularization may induce excess shrinkage when estimating smoothing functions, damaging predictive performance. Moreover, most of these GAMs consider an "all-in-all-out" approach for functional selection, rendering them difficult to answer if nonlinear effects are necessary. While some Bayesian models can address these shortcomings, using Markov chain Monte Carlo algorithms for model fitting creates a new challenge, scalability. Hence, we propose Bayesian hierarchical generalized additive models as a solution: we consider the smoothing penalty for proper shrinkage of curve interpolation and separation of smoothing function linear and nonlinear spaces. A novel spike-and-slab spline prior is proposed to select components of smoothing functions. Two scalable and deterministic algorithms, EM-Coordinate Descent and EM-Iterative Weighted Least Squares, are developed for different utilities. Simulation studies and metabolomics data analyses demonstrate improved predictive or computational performance against state-of-the-art models, mgcv, COSSO and sparse Bayesian GAM. The software implementation of the proposed models is freely available via an R package BHAM.


Active-LATHE: An Active Learning Algorithm for Boosting the Error Exponent for Learning Homogeneous Ising Trees

arXiv.org Machine Learning

The Chow-Liu algorithm (IEEE Trans.~Inform.~Theory, 1968) has been a mainstay for the learning of tree-structured graphical models from i.i.d.\ sampled data vectors. Its theoretical properties have been well-studied and are well-understood. In this paper, we focus on the class of trees that are arguably even more fundamental, namely {\em homogeneous} trees in which each pair of nodes that forms an edge has the same correlation $\rho$. We ask whether we are able to further reduce the error probability of learning the structure of the homogeneous tree model when {\em active learning} or {\em active sampling of nodes or variables} is allowed. Our figure of merit is the {\em error exponent}, which quantifies the exponential rate of decay of the error probability with an increasing number of data samples. At first sight, an improvement in the error exponent seems impossible, as all the edges are statistically identical. We design and analyze an algorithm Active Learning Algorithm for Trees with Homogeneous Edge (Active-LATHE), which surprisingly boosts the error exponent by at least 40\% when $\rho$ is at least $0.8$. For all other values of $\rho$, we also observe commensurate, but more modest, improvements in the error exponent. Our analysis hinges on judiciously exploiting the minute but detectable statistical variation of the samples to allocate more data to parts of the graph in which we are less confident of being correct.


User-friendly introduction to PAC-Bayes bounds

arXiv.org Machine Learning

Aggregated predictors are obtained by making a set of basic predictors vote according to some weights, that is, to some probability distribution. Randomized predictors are obtained by sampling in a set of basic predictors, according to some prescribed probability distribution. Thus, aggregated and randomized predictors have in common that they are not defined by a minimization problem, but by a probability distribution on the set of predictors. In statistical learning theory, there is a set of tools designed to understand the generalization ability of such procedures: PAC-Bayesian or PAC-Bayes bounds. Since the original PAC-Bayes bounds of D. McAllester, these tools have been considerably improved in many directions (we will for example describe a simplified version of the localization technique of O. Catoni that was missed by the community, and later rediscovered as "mutual information bounds"). Very recently, PAC-Bayes bounds received a considerable attention: for example there was workshop on PAC-Bayes at NIPS 2017, "(Almost) 50 Shades of Bayesian Learning: PAC-Bayesian trends and insights", organized by B. Guedj, F. Bach and P. Germain. One of the reason of this recent success is the successful application of these bounds to neural networks by G. Dziugaite and D. Roy. An elementary introduction to PAC-Bayes theory is still missing. This is an attempt to provide such an introduction.


Implicit Generative Copulas

arXiv.org Machine Learning

Copulas are a powerful tool for modeling multivariate distributions as they allow to separately estimate the univariate marginal distributions and the joint dependency structure. However, known parametric copulas offer limited flexibility especially in high dimensions, while commonly used non-parametric methods suffer from the curse of dimensionality. A popular remedy is to construct a tree-based hierarchy of conditional bivariate copulas. In this paper, we propose a flexible, yet conceptually simple alternative based on implicit generative neural networks. The key challenge is to ensure marginal uniformity of the estimated copula distribution. We achieve this by learning a multivariate latent distribution with unspecified marginals but the desired dependency structure. By applying the probability integral transform, we can then obtain samples from the high-dimensional copula distribution without relying on parametric assumptions or the need to find a suitable tree structure. Experiments on synthetic and real data from finance, physics, and image generation demonstrate the performance of this approach.


Applications of Multi-Agent Reinforcement Learning in Future Internet: A Comprehensive Survey

arXiv.org Artificial Intelligence

Future Internet involves several emerging technologies such as 5G and beyond 5G networks, vehicular networks, unmanned aerial vehicle (UAV) networks, and Internet of Things (IoTs). Moreover, future Internet becomes heterogeneous and decentralized with a large number of involved network entities. Each entity may need to make its local decision to improve the network performance under dynamic and uncertain network environments. Standard learning algorithms such as single-agent Reinforcement Learning (RL) or Deep Reinforcement Learning (DRL) have been recently used to enable each network entity as an agent to learn an optimal decision-making policy adaptively through interacting with the unknown environments. However, such an algorithm fails to model the cooperations or competitions among network entities, and simply treats other entities as a part of the environment that may result in the non-stationarity issue. Multi-agent Reinforcement Learning (MARL) allows each network entity to learn its optimal policy by observing not only the environments, but also other entities' policies. As a result, MARL can significantly improve the learning efficiency of the network entities, and it has been recently used to solve various issues in the emerging networks. In this paper, we thus review the applications of MARL in the emerging networks. In particular, we provide a tutorial of MARL and a comprehensive survey of applications of MARL in next generation Internet. In particular, we first introduce single-agent RL and MARL. Then, we review a number of applications of MARL to solve emerging issues in future Internet. The issues consist of network access, transmit power control, computation offloading, content caching, packet routing, trajectory design for UAV-aided networks, and network security issues.


Graph Posterior Network: Bayesian Predictive Uncertainty for Node Classification

arXiv.org Machine Learning

The interdependence between nodes in graphs is key to improve class predictions on nodes and utilized in approaches like Label Propagation (LP) or in Graph Neural Networks (GNN). Nonetheless, uncertainty estimation for non-independent node-level predictions is under-explored. In this work, we explore uncertainty quantification for node classification in three ways: (1) We derive three axioms explicitly characterizing the expected predictive uncertainty behavior in homophilic attributed graphs. (2) We propose a new model Graph Posterior Network (GPN) which explicitly performs Bayesian posterior updates for predictions on interdependent nodes. GPN provably obeys the proposed axioms. (3) We extensively evaluate GPN and a strong set of baselines on semi-supervised node classification including detection of anomalous features, and detection of left-out classes. GPN outperforms existing approaches for uncertainty estimation in the experiments.


Efficient Learning and Decoding of the Continuous-Time Hidden Markov Model for Disease Progression Modeling

arXiv.org Artificial Intelligence

The Continuous-Time Hidden Markov Model (CT-HMM) is an attractive approach to modeling disease progression due to its ability to describe noisy observations arriving irregularly in time. However, the lack of an efficient parameter learning algorithm for CT-HMM restricts its use to very small models or requires unrealistic constraints on the state transitions. In this paper, we present the first complete characterization of efficient EM-based learning methods for CT-HMM models, as well as the first solution to decoding the optimal state transition sequence and the corresponding state dwelling time. We show that EM-based learning consists of two challenges: the estimation of posterior state probabilities and the computation of end-state conditioned statistics. We solve the first challenge by reformulating the estimation problem as an equivalent discrete time-inhomogeneous hidden Markov model. The second challenge is addressed by adapting three distinct approaches from the continuous time Markov chain (CTMC) literature to the CT-HMM domain. Additionally, we further improve the efficiency of the most efficient method by a factor of the number of states. Then, for decoding, we incorporate a state-of-the-art method from the (CTMC) literature, and extend the end-state conditioned optimal state sequence decoding to the CT-HMM case with the computation of the expected state dwelling time. We demonstrate the use of CT-HMMs with more than 100 states to visualize and predict disease progression using a glaucoma dataset and an Alzheimer's disease dataset, and to decode and visualize the most probable state transition trajectory for individuals on the glaucoma dataset, which helps to identify progressing phenotypes in a comprehensive way. Finally, we apply the CT-HMM modeling and decoding strategy to investigate the progression of language acquisition and development.