Learning Graphical Models
Unifying Approaches in Active Learning and Active Sampling via Fisher Information and Information-Theoretic Quantities
Recently proposed methods in data subset selection, that is active learning and active sampling, use Fisher information, Hessians, similarity matrices based on gradients, and gradient lengths to estimate how informative data is for a model's training. Are these different approaches connected, and if so, how? We revisit the fundamentals of Bayesian optimal experiment design and show that these recently proposed methods can be understood as approximations to information-theoretic quantities: among them, the mutual information between predictions and model parameters, known as expected information gain or BALD in machine learning, and the mutual information between predictions of acquisition candidates and test samples, known as expected predictive information gain. We develop a comprehensive set of approximations using Fisher information and observed information and derive a unified framework that connects seemingly disparate literature. Although Bayesian methods are often seen as separate from non-Bayesian ones, the sometimes fuzzy notion of "informativeness" expressed in various non-Bayesian objectives leads to the same couple of information quantities, which were, in principle, already known by Lindley (1956) and MacKay (1992).
On the connection between Bregman divergence and value in regularized Markov decision processes
In this short note we derive a relationship between the Bregman divergence from the current policy to the optimal policy and the suboptimality of the current value function in a regularized Markov decision process. This result has implications for multi-task reinforcement learning, offline reinforcement learning, and regret analysis under function approximation, among others. The main result of this manuscript holds more generally, but for brevity we shall restrict ourselves to this case. To prove our main result we require a slight generalization of the performance difference lemma (PDL)[1] to cover the regularized MDP case. The proof of this identity is included in the appendix for completeness.
Sparse Horseshoe Estimation via Expectation-Maximisation
Tew, Shu Yu, Schmidt, Daniel F., Makalic, Enes
The horseshoe prior is known to possess many desirable properties for Bayesian estimation of sparse parameter vectors, yet its density function lacks an analytic form. As such, it is challenging to find a closed-form solution for the posterior mode. Conventional horseshoe estimators use the posterior mean to estimate the parameters, but these estimates are not sparse. We propose a novel expectation-maximisation (EM) procedure for computing the MAP estimates of the parameters in the case of the standard linear model. A particular strength of our approach is that the M-step depends only on the form of the prior and it is independent of the form of the likelihood. We introduce several simple modifications of this EM procedure that allow for straightforward extension to generalised linear models. In experiments performed on simulated and real data, our approach performs comparable, or superior to, state-of-the-art sparse estimation methods in terms of statistical performance and computational cost.
Graph Reinforcement Learning Application to Co-operative Decision-Making in Mixed Autonomy Traffic: Framework, Survey, and Challenges
Liu, Qi, Li, Xueyuan, Li, Zirui, Wu, Jingda, Du, Guodong, Gao, Xin, Yang, Fan, Yuan, Shihua
Proper functioning of connected and automated vehicles (CAVs) is crucial for the safety and efficiency of future intelligent transport systems. Meanwhile, transitioning to fully autonomous driving requires a long period of mixed autonomy traffic, including both CAVs and human-driven vehicles. Thus, collaboration decision-making for CAVs is essential to generate appropriate driving behaviors to enhance the safety and efficiency of mixed autonomy traffic. In recent years, deep reinforcement learning (DRL) has been widely used in solving decision-making problems. However, the existing DRL-based methods have been mainly focused on solving the decision-making of a single CAV. Using the existing DRL-based methods in mixed autonomy traffic cannot accurately represent the mutual effects of vehicles and model dynamic traffic environments. To address these shortcomings, this article proposes a graph reinforcement learning (GRL) approach for multi-agent decision-making of CAVs in mixed autonomy traffic. First, a generic and modular GRL framework is designed. Then, a systematic review of DRL and GRL methods is presented, focusing on the problems addressed in recent research. Moreover, a comparative study on different GRL methods is further proposed based on the designed framework to verify the effectiveness of GRL methods. Results show that the GRL methods can well optimize the performance of multi-agent decision-making for CAVs in mixed autonomy traffic compared to the DRL methods. Finally, challenges and future research directions are summarized. This study can provide a valuable research reference for solving the multi-agent decision-making problems of CAVs in mixed autonomy traffic and can promote the implementation of GRL-based methods into intelligent transportation systems. The source code of our work can be found at https://github.com/Jacklinkk/Graph_CAVs.
Batch Active Learning from the Perspective of Sparse Approximation
Shen, Maohao, Jiang, Bowen, Zhang, Jacky Yibo, Koyejo, Oluwasanmi
Active learning enables efficient model training by leveraging interactions between machine learning agents and human annotators. We study and propose a novel framework that formulates batch active learning from the sparse approximation's perspective. Our active learning method aims to find an informative subset from the unlabeled data pool such that the corresponding training loss function approximates its full data pool counterpart. We realize the framework as sparsity-constrained discontinuous optimization problems, which explicitly balance uncertainty and representation for large-scale applications and could be solved by greedy or proximal iterative hard thresholding algorithms. The proposed method can adapt to various settings, including both Bayesian and non-Bayesian neural networks. Numerical experiments show that our work achieves competitive performance across different settings with lower computational complexity.
Deep Learning in Single-Cell Analysis
Molho, Dylan, Ding, Jiayuan, Li, Zhaoheng, Wen, Hongzhi, Tang, Wenzhuo, Wang, Yixin, Venegas, Julian, Jin, Wei, Liu, Renming, Su, Runze, Danaher, Patrick, Yang, Robert, Lei, Yu Leo, Xie, Yuying, Tang, Jiliang
Single-cell technologies are revolutionizing the entire field of biology. The large volumes of data generated by single-cell technologies are high-dimensional, sparse, heterogeneous, and have complicated dependency structures, making analyses using conventional machine learning approaches challenging and impractical. In tackling these challenges, deep learning often demonstrates superior performance compared to traditional machine learning methods. In this work, we give a comprehensive survey on deep learning in single-cell analysis. We first introduce background on single-cell technologies and their development, as well as fundamental concepts of deep learning including the most popular deep architectures. We present an overview of the single-cell analytic pipeline pursued in research applications while noting divergences due to data sources or specific applications. We then review seven popular tasks spanning through different stages of the single-cell analysis pipeline, including multimodal integration, imputation, clustering, spatial domain identification, cell-type deconvolution, cell segmentation, and cell-type annotation. Under each task, we describe the most recent developments in classical and deep learning methods and discuss their advantages and disadvantages. Deep learning tools and benchmark datasets are also summarized for each task. Finally, we discuss the future directions and the most recent challenges. This survey will serve as a reference for biologists and computer scientists, encouraging collaborations.
The Shape of Learning Curves: a Review
Learning curves provide insight into the dependence of a learner's generalization performance on the training set size. This important tool can be used for model selection, to predict the effect of more training data, and to reduce the computational complexity of model training and hyperparameter tuning. This review recounts the origins of the term, provides a formal definition of the learning curve, and briefly covers basics such as its estimation. Our main contribution is a comprehensive overview of the literature regarding the shape of learning curves. We discuss empirical and theoretical evidence that supports well-behaved curves that often have the shape of a power law or an exponential. We consider the learning curves of Gaussian processes, the complex shapes they can display, and the factors influencing them. We draw specific attention to examples of learning curves that are ill-behaved, showing worse learning performance with more training data. To wrap up, we point out various open problems that warrant deeper empirical and theoretical investigation. All in all, our review underscores that learning curves are surprisingly diverse and no universal model can be identified.
Lightweight 3D Convolutional Neural Network for Schizophrenia diagnosis using MRI Images and Ensemble Bagging Classifier
Patro, P Supriya, Goel, Tripti, VaraPrasad, S A, Tanveer, M, Murugan, R
Structural alterations have been thoroughly investigated in the brain during the early onset of schizophrenia (SCZ) with the development of neuroimaging methods. The objective of the paper is an efficient classification of SCZ in 2 different classes: Cognitive Normal (CN), and SCZ using magnetic resonance imaging (MRI) images. This paper proposed a lightweight 3D convolutional neural network (CNN) based framework for SCZ diagnosis using MRI images. In the proposed model, lightweight 3D CNN is used to extract both spatial and spectral features simultaneously from 3D volume MRI scans, and classification is done using an ensemble bagging classifier. Ensemble bagging classifier contributes to preventing overfitting, reduces variance, and improves the model's accuracy. The proposed algorithm is tested on datasets taken from three benchmark databases available as open-source: MCICShare, COBRE, and fBRINPhase-II. These datasets have undergone preprocessing steps to register all the MRI images to the standard template and reduce the artifacts. The model achieves the highest accuracy 92.22%, sensitivity 94.44%, specificity 90%, precision 90.43%, recall 94.44%, F1-score 92.39% and G-mean 92.19% as compared to the current state-of-the-art techniques. The performance metrics evidenced the use of this model to assist the clinicians for automatic accurate diagnosis of SCZ.
Active-Learning-as-a-Service: An Automatic and Efficient MLOps System for Data-Centric AI
Huang, Yizheng, Zhang, Huaizheng, Li, Yuanming, Lau, Chiew Tong, You, Yang
The success of today's AI applications requires not only model training (Model-centric) but also data engineering (Data-centric). In data-centric AI, active learning (AL) plays a vital role, but current AL tools 1) require users to manually select AL strategies, and 2) can not perform AL tasks efficiently. To this end, this paper presents an automatic and efficient MLOps system for AL, named ALaaS (Active-Learning-as-a-Service). Specifically, 1) ALaaS implements an AL agent, including a performance predictor and a workflow controller, to decide the most suitable AL strategies given users' datasets and budgets. We call this a predictive-based successive halving early-stop (PSHEA) procedure. 2) ALaaS adopts a server-client architecture to support an AL pipeline and implements stage-level parallelism for high efficiency. Meanwhile, caching and batching techniques are employed to further accelerate the AL process. In addition to efficiency, ALaaS ensures accessibility with the help of the design philosophy of configuration-as-a-service. Extensive experiments show that ALaaS outperforms all other baselines in terms of latency and throughput. Also, guided by the AL agent, ALaaS can automatically select and run AL strategies for non-expert users under different datasets and budgets. Our code is available at \url{https://github.com/MLSysOps/Active-Learning-as-a-Service}.
On learning history based policies for controlling Markov decision processes
Patil, Gandharv, Mahajan, Aditya, Precup, Doina
State abstraction and function approximation are vital components used by reinforcement learning (RL) algorithms to efficiently solve complex control problems when exact computations are intractable due to large state and action spaces. Over the past few decades, state abstraction in RL has evolved from the use of pre-determined and problemspecific features [18, 74, 9, 69, 64, 42, 58] to the use of adaptive basis functions learnt by solving an isolated regression problem [53, 47, 39, 56], and more recently to the use of neural network-based Deep-RL algorithms that embed state abstraction in successive layers of a neural network [5, 7]. Feature abstraction results in information loss, and the resulting state features might not satisfy the controlled Markov property, even if this property is satisfied by the corresponding state [70]. One approach to counteract the loss of the Markov property is to generate the features using the history of state-action pairs, and empirical evidence suggests that using such history-based features are beneficial in practice [52]. However, a theoretical characterisation of history-based Deep-RL algorithms for fully observed Markov Decision Processes (MDPs) is largely absent form the literature.