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Application of targeted maximum likelihood estimation in public health and epidemiological studies: a systematic review

arXiv.org Machine Learning

The Targeted Maximum Likelihood Estimation (TMLE) statistical data analysis framework integrates machine learning, statistical theory, and statistical inference to provide a least biased, efficient and robust strategy for estimation and inference of a variety of statistical and causal parameters. We describe and evaluate the epidemiological applications that have benefited from recent methodological developments. We conducted a systematic literature review in PubMed for articles that applied any form of TMLE in observational studies. We summarised the epidemiological discipline, geographical location, expertise of the authors, and TMLE methods over time. We used the Roadmap of Targeted Learning and Causal Inference to extract key methodological aspects of the publications. We showcase the contributions to the literature of these TMLE results. Of the 81 publications included, 25% originated from the University of California at Berkeley, where the framework was first developed by Professor Mark van der Laan. By the first half of 2022, 70% of the publications originated from outside the United States and explored up to 7 different epidemiological disciplines in 2021-22. Double-robustness, bias reduction and model misspecification were the main motivations that drew researchers towards the TMLE framework. Through time, a wide variety of methodological, tutorial and software-specific articles were cited, owing to the constant growth of methodological developments around TMLE. There is a clear dissemination trend of the TMLE framework to various epidemiological disciplines and to increasing numbers of geographical areas. The availability of R packages, publication of tutorial papers, and involvement of methodological experts in applied publications have contributed to an exponential increase in the number of studies that understood the benefits, and adoption, of TMLE.


BCSSN: Bi-direction Compact Spatial Separable Network for Collision Avoidance in Autonomous Driving

arXiv.org Artificial Intelligence

Autonomous driving has been an active area of research and development, with various strategies being explored for decision-making in autonomous vehicles. Rule-based systems, decision trees, Markov decision processes, and Bayesian networks have been some of the popular methods used to tackle the complexities of traffic conditions and avoid collisions. However, with the emergence of deep learning, many researchers have turned towards CNN-based methods to improve the performance of collision avoidance. Despite the promising results achieved by some CNN-based methods, the failure to establish correlations between sequential images often leads to more collisions. In this paper, we propose a CNN-based method that overcomes the limitation by establishing feature correlations between regions in sequential images using variants of attention. Our method combines the advantages of CNN in capturing regional features with a bi-directional LSTM to enhance the relationship between different local areas. Additionally, we use an encoder to improve computational efficiency. Our method takes "Bird's Eye View" graphs generated from camera and LiDAR sensors as input, simulates the position (x, y) and head offset angle (Yaw) to generate future trajectories. Experiment results demonstrate that our proposed method outperforms existing vision-based strategies, achieving an average of only 3.7 collisions per 1000 miles of driving distance on the L5kit test set. This significantly improves the success rate of collision avoidance and provides a promising solution for autonomous driving.


Predictive Experience Replay for Continual Visual Control and Forecasting

arXiv.org Artificial Intelligence

Learning physical dynamics in a series of non-stationary environments is a challenging but essential task for model-based reinforcement learning (MBRL) with visual inputs. It requires the agent to consistently adapt to novel tasks without forgetting previous knowledge. In this paper, we present a new continual learning approach for visual dynamics modeling and explore its efficacy in visual control and forecasting. The key assumption is that an ideal world model can provide a non-forgetting environment simulator, which enables the agent to optimize the policy in a multi-task learning manner based on the imagined trajectories from the world model. To this end, we first propose the mixture world model that learns task-specific dynamics priors with a mixture of Gaussians, and then introduce a new training strategy to overcome catastrophic forgetting, which we call predictive experience replay. Finally, we extend these methods to continual RL and further address the value estimation problems with the exploratory-conservative behavior learning approach. Our model remarkably outperforms the naive combinations of existing continual learning and visual RL algorithms on DeepMind Control and Meta-World benchmarks with continual visual control tasks. It is also shown to effectively alleviate the forgetting of spatiotemporal dynamics in video prediction datasets with evolving domains.


Twice Regularized Markov Decision Processes: The Equivalence between Robustness and Regularization

arXiv.org Artificial Intelligence

Robust Markov decision processes (MDPs) aim to handle changing or partially known system dynamics. To solve them, one typically resorts to robust optimization methods. However, this significantly increases computational complexity and limits scalability in both learning and planning. On the other hand, regularized MDPs show more stability in policy learning without impairing time complexity. Yet, they generally do not encompass uncertainty in the model dynamics. In this work, we aim to learn robust MDPs using regularization. We first show that regularized MDPs are a particular instance of robust MDPs with uncertain reward. We thus establish that policy iteration on reward-robust MDPs can have the same time complexity as on regularized MDPs. We further extend this relationship to MDPs with uncertain transitions: this leads to a regularization term with an additional dependence on the value function. We then generalize regularized MDPs to twice regularized MDPs ($\text{R}^2$ MDPs), i.e., MDPs with $\textit{both}$ value and policy regularization. The corresponding Bellman operators enable us to derive planning and learning schemes with convergence and generalization guarantees, thus reducing robustness to regularization. We numerically show this two-fold advantage on tabular and physical domains, highlighting the fact that $\text{R}^2$ preserves its efficacy in continuous environments.


Intrinsic dimension estimation for discrete metrics

arXiv.org Artificial Intelligence

Real world-datasets characterized by discrete features are ubiquitous: from categorical surveys to clinical questionnaires, from unweighted networks to DNA sequences. Nevertheless, the most common unsupervised dimensional reduction methods are designed for continuous spaces, and their use for discrete spaces can lead to errors and biases. In this letter we introduce an algorithm to infer the intrinsic dimension (ID) of datasets embedded in discrete spaces. We demonstrate its accuracy on benchmark datasets, and we apply it to analyze a metagenomic dataset for species fingerprinting, finding a surprisingly small ID, of order 2. This suggests that evolutive pressure acts on a low-dimensional manifold despite the high-dimensionality of sequences' space.


Towards Targeted Change Detection with Heterogeneous Remote Sensing Images for Forest Mortality Mapping

arXiv.org Artificial Intelligence

Several generic methods have recently been developed for change detection in heterogeneous remote sensing data, such as images from synthetic aperture radar (SAR) and multispectral radiometers. However, these are not well suited to detect weak signatures of certain disturbances of ecological systems. To resolve this problem we propose a new approach based on image-to-image translation and one-class classification (OCC). We aim to map forest mortality caused by an outbreak of geometrid moths in a sparsely forested forest-tundra ecotone using multisource satellite images. The images preceding and following the event are collected by Landsat-5 and RADARSAT-2, respectively. Using a recent deep learning method for change-aware image translation, we compute difference images in both satellites' respective domains. These differences are stacked with the original pre- and post-event images and passed to an OCC trained on a small sample from the targeted change class. The classifier produces a credible map of the complex pattern of forest mortality.


Explore the World of Data-Tech with DataHour - Analytics Vidhya

#artificialintelligence

DataHour sessions are an excellent opportunity for aspiring individuals looking to launch a career in the data-tech industry, including students and freshers. Current professionals seeking to transition into the data-tech domain or data science professionals seeking to enhance their career growth and development can also benefit from these sessions. In this blog post, we will introduce you to some of the upcoming DataHour sessions, including contrastive learning for image classification, feature engineering, POS tagging, document segmentation using Layout Parser, and many more. Each session is designed to provide you with insights into various data tech topics, techniques, and methods. Attendees will learn from experts in the field, gain practical knowledge, and get to ask questions to clear their doubts.


Lossless Point Cloud Geometry and Attribute Compression Using a Learned Conditional Probability Model

arXiv.org Artificial Intelligence

In recent years, we have witnessed the presence of point cloud data in many aspects of our life, from immersive media, autonomous driving to healthcare, although at the cost of a tremendous amount of data. In this paper, we present an efficient lossless point cloud compression method that uses sparse tensor-based deep neural networks to learn point cloud geometry and color probability distributions. Our method represents a point cloud with both occupancy feature and three attribute features at different bit depths in a unified sparse representation. This allows us to efficiently exploit feature-wise and point-wise dependencies within point clouds using a sparse tensor-based neural network and thus build an accurate auto-regressive context model for an arithmetic coder. To the best of our knowledge, this is the first learning-based lossless point cloud geometry and attribute compression approach. Compared with the-state-of-the-art lossless point cloud compression method from Moving Picture Experts Group (MPEG), our method achieves 22.6% reduction in total bitrate on a diverse set of test point clouds while having 49.0% and 18.3% rate reduction on geometry and color attribute component, respectively.


Estimating a potential without the agony of the partition function

arXiv.org Artificial Intelligence

Estimating a Gibbs density function given a sample is an important problem in computational statistics and statistical learning. Although the well established maximum likelihood method is commonly used, it requires the computation of the partition function (i.e., the normalization of the density). This function can be easily calculated for simple low-dimensional problems but its computation is difficult or even intractable for general densities and high-dimensional problems. In this paper we propose an alternative approach based on Maximum A-Posteriori (MAP) estimators, we name Maximum Recovery MAP (MR-MAP), to derive estimators that do not require the computation of the partition function, and reformulate the problem as an optimization problem. We further propose a least-action type potential that allows us to quickly solve the optimization problem as a feed-forward hyperbolic neural network. We demonstrate the effectiveness of our methods on some standard data sets.


Learning interpretable causal networks from very large datasets, application to 400,000 medical records of breast cancer patients

arXiv.org Artificial Intelligence

Discovering causal effects is at the core of scientific investigation but remains challenging when only observational data is available. In practice, causal networks are difficult to learn and interpret, and limited to relatively small datasets. We report a more reliable and scalable causal discovery method (iMIIC), based on a general mutual information supremum principle, which greatly improves the precision of inferred causal relations while distinguishing genuine causes from putative and latent causal effects. We showcase iMIIC on synthetic and real-life healthcare data from 396,179 breast cancer patients from the US Surveillance, Epidemiology, and End Results program. More than 90\% of predicted causal effects appear correct, while the remaining unexpected direct and indirect causal effects can be interpreted in terms of diagnostic procedures, therapeutic timing, patient preference or socio-economic disparity. iMIIC's unique capabilities open up new avenues to discover reliable and interpretable causal networks across a range of research fields.