We present a sequence of unsupervised, nonparametric Bayesian models for clustering complex linguistic objects. In this approach, we consider a potentially infinite number of features and categorical outcomes. We evaluate these models for the task of within- and cross-document event coreference on two corpora. All the models we investigated show significant improvements when compared against an existing baseline for this task.

This paper considers a sensitivity analysis in Hidden Markov Models with continuous state and observation spaces. We propose an Infinitesimal Perturbation Analysis (IPA) on the filtering distribution with respect to some parameters of the model. We describe a methodology for using any algorithm that estimates the filtering density, such as Sequential Monte Carlo methods, to design an algorithm that estimates its gradient. The resulting IPA estimator is proven to be asymptotically unbiased, consistent and has computational complexity linear in the number of particles. We consider an application of this analysis to the problem of identifying unknown parameters of the model given a sequence of observations.

Dynamic Bayesian networks have been applied widely to reconstruct the structure of regulatory processes from time series data. The standard approach is based on the assumption of a homogeneous Markov chain, which is not valid in many real-world scenarios. Recent research efforts addressing this shortcoming have considered undirected graphs, directed graphs for discretized data, or over-flexible models that lack any information sharing between time series segments. In the present article, we propose a non-stationary dynamic Bayesian network for continuous data, in which parameters are allowed to vary between segments, and in which a common network structure provides essential information sharing across segments. Our model is based on a Bayesian change-point process, and we apply a variant of the allocation sampler of Nobile and Fearnside to infer the number and location of the change-points.

Optimal coding provides a guiding principle for understanding the representation of sensory variables in neural populations. Here we consider the influence of a prior probability distribution over sensory variables on the optimal allocation of cells and spikes in a neural population. We model the spikes of each cell as samples from an independent Poisson process with rate governed by an associated tuning curve. For this response model, we approximate the Fisher information in terms of the density and amplitude of the tuning curves, under the assumption that tuning width varies inversely with cell density. We consider a family of objective functions based on the expected value, over the sensory prior, of a functional of the Fisher information.

This paper introduces a Monte-Carlo algorithm for online planning in large POMDPs. The algorithm combines a Monte-Carlo update of the agent's belief state with a Monte-Carlo tree search from the current belief state. The new algorithm, POMCP, has two important properties. First, Monte-Carlo sampling is used to break the curse of dimensionality both during belief state updates and during planning. Second, only a black box simulator of the POMDP is required, rather than explicit probability distributions.

We present an algorithm for learning high-treewidth Markov networks where inference is still tractable. This is made possible by exploiting context specific independence and determinism in the domain. The class of models our algorithm can learn has the same desirable properties as thin junction trees: polynomial inference, closed form weight learning, etc., but is much broader. Our algorithm searches for a feature that divides the state space into subspaces where the remaining variables decompose into independent subsets (conditioned on the feature or its negation) and recurses on each subspace/subset of variables until no useful new features can be found. We provide probabilistic performance guarantees for our algorithm under the assumption that the maximum feature length is k (the treewidth can be much larger) and dependences are of bounded strength.

Latent variable models are a powerful tool for addressing several tasks in machine learning. However, the algorithms for learning the parameters of latent variable models are prone to getting stuck in a bad local optimum. To alleviate this problem, we build on the intuition that, rather than considering all samples simultaneously, the algorithm should be presented with the training data in a meaningful order that facilitates learning. The order of the samples is determined by how easy they are. The main challenge is that often we are not provided with a readily computable measure of the easiness of samples.

We propose a novel Bayesian nonparametric approach to learning with probabilistic deterministic finite automata (PDFA). We define and develop and sampler for a PDFA with an infinite number of states which we call the probabilistic deterministic infinite automata (PDIA). Posterior predictive inference in this model, given a finite training sequence, can be interpreted as averaging over multiple PDFAs of varying structure, where each PDFA is biased towards having few states. We suggest that our method for averaging over PDFAs is a novel approach to predictive distribution smoothing. We test PDIA inference both on PDFA structure learning and on both natural language and DNA data prediction tasks.

We consider the tree structured group Lasso where the structure over the features can be represented as a tree with leaf nodes as features and internal nodes as clusters of the features. The structured regularization with a pre-defined tree structure is based on a group-Lasso penalty, where one group is defined for each node in the tree. Such a regularization can help uncover the structured sparsity, which is desirable for applications with some meaningful tree structures on the features. However, the tree structured group Lasso is challenging to solve due to the complex regularization. In this paper, we develop an efficient algorithm for the tree structured group Lasso. One of the key steps in the proposed algorithm is to solve the Moreau-Yosida regularization associated with the grouped tree structure.

The Charles Bonnet Syndrome (CBS) is characterized by complex vivid visual hallucinations in people with, primarily, eye diseases and no other neurological pathology. We present a Deep Boltzmann Machine model of CBS, exploring two core hypotheses: First, that the visual cortex learns a generative or predictive model of sensory input, thus explaining its capability to generate internal imagery. And second, that homeostatic mechanisms stabilize neuronal activity levels, leading to hallucinations being formed when input is lacking. We reproduce a variety of qualitative findings in CBS. We also introduce a modification to the DBM that allows us to model a possible role of acetylcholine in CBS as mediating the balance of feed-forward and feed-back processing.