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 Learning Graphical Models


Label Propagation Techniques for Artifact Detection in Imbalanced Classes using Photoplethysmogram Signals

arXiv.org Artificial Intelligence

Photoplethysmogram (PPG) signals are widely used in healthcare for monitoring vital signs, but they are susceptible to motion artifacts that can lead to inaccurate interpretations. In this study, the use of label propagation techniques to propagate labels among PPG samples is explored, particularly in imbalanced class scenarios where clean PPG samples are significantly outnumbered by artifact-contaminated samples. With a precision of 91%, a recall of 90% and an F1 score of 90% for the class without artifacts, the results demonstrate its effectiveness in labeling a medical dataset, even when clean samples are rare. For the classification of artifacts our study compares supervised classifiers such as conventional classifiers and neural networks (MLP, Transformers, FCN) with the semi-supervised label propagation algorithm. With a precision of 89%, a recall of 95% and an F1 score of 92%, the KNN supervised model gives good results, but the semi-supervised algorithm performs better in detecting artifacts. The findings suggest that the semi-supervised algorithm label propagation hold promise for artifact detection in PPG signals, which can enhance the reliability of PPG-based health monitoring systems in real-world applications.


Hierarchical Topological Ordering with Conditional Independence Test for Limited Time Series

arXiv.org Artificial Intelligence

Learning directed acyclic graphs (DAGs) to identify causal relations underlying observational data is crucial but also poses significant challenges. Recently, topology-based methods have emerged as a two-step approach to discovering DAGs by first learning the topological ordering of variables and then eliminating redundant edges, while ensuring that the graph remains acyclic. However, one limitation is that these methods would generate numerous spurious edges that require subsequent pruning. To overcome this limitation, in this paper, we propose an improvement to topology-based methods by introducing limited time series data, consisting of only two cross-sectional records that need not be adjacent in time and are subject to flexible timing. By incorporating conditional instrumental variables as exogenous interventions, we aim to identify descendant nodes for each variable. Following this line, we propose a hierarchical topological ordering algorithm with conditional independence test (HT-CIT), which enables the efficient learning of sparse DAGs with a smaller search space compared to other popular approaches. The HT-CIT algorithm greatly reduces the number of edges that need to be pruned. Empirical results from synthetic and real-world datasets demonstrate the superiority of the proposed HT-CIT algorithm.


Variational latent discrete representation for time series modelling

arXiv.org Machine Learning

Discrete latent space models have recently achieved performance on par with their continuous counterparts in deep variational inference. While they still face various implementation challenges, these models offer the opportunity for a better interpretation of latent spaces, as well as a more direct representation of naturally discrete phenomena. Most recent approaches propose to train separately very high-dimensional prior models on the discrete latent data which is a challenging task on its own. In this paper, we introduce a latent data model where the discrete state is a Markov chain, which allows fast end-to-end training. The performance of our generative model is assessed on a building management dataset and on the publicly available Electricity Transformer Dataset.


Locally Adaptive Algorithms for Multiple Testing with Network Structure, with Application to Genome-Wide Association Studies

arXiv.org Machine Learning

Linkage analysis has provided valuable insights to the GWAS studies, particularly in revealing that SNPs in linkage disequilibrium (LD) can jointly influence disease phenotypes. However, the potential of LD network data has often been overlooked or underutilized in the literature. In this paper, we propose a locally adaptive structure learning algorithm (LASLA) that provides a principled and generic framework for incorporating network data or multiple samples of auxiliary data from related source domains; possibly in different dimensions/structures and from diverse populations. LASLA employs a $p$-value weighting approach, utilizing structural insights to assign data-driven weights to individual test points. Theoretical analysis shows that LASLA can asymptotically control FDR with independent or weakly dependent primary statistics, and achieve higher power when the network data is informative. Efficiency again of LASLA is illustrated through various synthetic experiments and an application to T2D-associated SNP identification.


Partially Observable Multi-agent RL with (Quasi-)Efficiency: The Blessing of Information Sharing

arXiv.org Artificial Intelligence

We study provable multi-agent reinforcement learning (MARL) in the general framework of partially observable stochastic games (POSGs). To circumvent the known hardness results and the use of computationally intractable oracles, we advocate leveraging the potential \emph{information-sharing} among agents, a common practice in empirical MARL, and a standard model for multi-agent control systems with communications. We first establish several computation complexity results to justify the necessity of information-sharing, as well as the observability assumption that has enabled quasi-efficient single-agent RL with partial observations, for computational efficiency in solving POSGs. We then propose to further \emph{approximate} the shared common information to construct an {approximate model} of the POSG, in which planning an approximate equilibrium (in terms of solving the original POSG) can be quasi-efficient, i.e., of quasi-polynomial-time, under the aforementioned assumptions. Furthermore, we develop a partially observable MARL algorithm that is both statistically and computationally quasi-efficient. We hope our study may open up the possibilities of leveraging and even designing different \emph{information structures}, for developing both sample- and computation-efficient partially observable MARL.


Integrating cognitive map learning and active inference for planning in ambiguous environments

arXiv.org Artificial Intelligence

Living organisms need to acquire both cognitive maps for learning the structure of the world and planning mechanisms able to deal with the challenges of navigating ambiguous environments. Although significant progress has been made in each of these areas independently, the best way to integrate them is an open research question. In this paper, we propose the integration of a statistical model of cognitive map formation within an active inference agent that supports planning under uncertainty. Specifically, we examine the clone-structured cognitive graph (CSCG) model of cognitive map formation and compare a naive clone graph agent with an active inference-driven clone graph agent, in three spatial navigation scenarios. Our findings demonstrate that while both agents are effective in simple scenarios, the active inference agent is more effective when planning in challenging scenarios, in which sensory observations provide ambiguous information about location.


Two Phases of Scaling Laws for Nearest Neighbor Classifiers

arXiv.org Artificial Intelligence

A scaling law refers to the observation that the test performance of a model improves as the number of training data increases. A fast scaling law implies that one can solve machine learning problems by simply boosting the data and the model sizes. Yet, in many cases, the benefit of adding more data can be negligible. In this work, we study the rate of scaling laws of nearest neighbor classifiers. We show that a scaling law can have two phases: in the first phase, the generalization error depends polynomially on the data dimension and decreases fast; whereas in the second phase, the error depends exponentially on the data dimension and decreases slowly. Our analysis highlights the complexity of the data distribution in determining the generalization error. When the data distributes benignly, our result suggests that nearest neighbor classifier can achieve a generalization error that depends polynomially, instead of exponentially, on the data dimension.


Denoising Diffusion Samplers

arXiv.org Artificial Intelligence

Denoising diffusion models are a popular class of generative models providing state-of-the-art results in many domains. One adds gradually noise to data using a diffusion to transform the data distribution into a Gaussian distribution. Samples from the generative model are then obtained by simulating an approximation of the time-reversal of this diffusion initialized by Gaussian samples. Practically, the intractable score terms appearing in the time-reversed process are approximated using score matching techniques. We explore here a similar idea to sample approximately from unnormalized probability density functions and estimate their normalizing constants. We consider a process where the target density diffuses towards a Gaussian. Denoising Diffusion Samplers (DDS) are obtained by approximating the corresponding time-reversal. While score matching is not applicable in this context, we can leverage many of the ideas introduced in generative modeling for Monte Carlo sampling. Existing theoretical results from denoising diffusion models also provide theoretical guarantees for DDS. We discuss the connections between DDS, optimal control and Schr\"odinger bridges and finally demonstrate DDS experimentally on a variety of challenging sampling tasks.


Explanations as Programs in Probabilistic Logic Programming

arXiv.org Artificial Intelligence

The generation of comprehensible explanations is an essential feature of modern artificial intelligence systems. In this work, we consider probabilistic logic programming, an extension of logic programming which can be useful to model domains with relational structure and uncertainty. Essentially, a program specifies a probability distribution over possible worlds (i.e., sets of facts). The notion of explanation is typically associated with that of a world, so that one often looks for the most probable world as well as for the worlds where the query is true. Unfortunately, such explanations exhibit no causal structure. In particular, the chain of inferences required for a specific prediction (represented by a query) is not shown. In this paper, we propose a novel approach where explanations are represented as programs that are generated from a given query by a number of unfolding-like transformations. Here, the chain of inferences that proves a given query is made explicit. Furthermore, the generated explanations are minimal (i.e., contain no irrelevant information) and can be parameterized w.r.t. a specification of visible predicates, so that the user may hide uninteresting details from explanations.


Neural Graphical Models

arXiv.org Artificial Intelligence

Probabilistic Graphical Models are often used to understand dynamics of a system. They can model relationships between features (nodes) and the underlying distribution. Theoretically these models can represent very complex dependency functions, but in practice often simplifying assumptions are made due to computational limitations associated with graph operations. In this work we introduce Neural Graphical Models (NGMs) which attempt to represent complex feature dependencies with reasonable computational costs. Given a graph of feature relationships and corresponding samples, we capture the dependency structure between the features along with their complex function representations by using a neural network as a multi-task learning framework. We provide efficient learning, inference and sampling algorithms. NGMs can fit generic graph structures including directed, undirected and mixed-edge graphs as well as support mixed input data types. We present empirical studies that show NGMs' capability to represent Gaussian graphical models, perform inference analysis of a lung cancer data and extract insights from a real world infant mortality data provided by Centers for Disease Control and Prevention.