The contractive auto-encoder learns a representation of the input data that captures the local manifold structure around each data point, through the leading singular vectors of the Jacobian of the transformation from input to representation. The corresponding singular values specify how much local variation is plausible in directions associated with the corresponding singular vectors, while remaining in a high-density region of the input space. This paper proposes a procedure for generating samples that are consistent with the local structure captured by a contractive auto-encoder. The associated stochastic process defines a distribution from which one can sample, and which experimentally appears to converge quickly and mix well between modes, compared to Restricted Boltzmann Machines and Deep Belief Networks. The intuitions behind this procedure can also be used to train the second layer of contraction that pools lower-level features and learns to be invariant to the local directions of variation discovered in the first layer. We show that this can help learn and represent invariances present in the data and improve classification error.

We investigate the problem of modeling symbolic sequences of polyphonic music in a completely general piano-roll representation. We introduce a probabilistic model based on distribution estimators conditioned on a recurrent neural network that is able to discover temporal dependencies in high-dimensional sequences. Our approach outperforms many traditional models of polyphonic music on a variety of realistic datasets. We show how our musical language model can serve as a symbolic prior to improve the accuracy of polyphonic transcription.

In this paper we propose an algorithm that builds sparse decision DAGs (directed acyclic graphs) from a list of base classifiers provided by an external learning method such as AdaBoost. The basic idea is to cast the DAG design task as a Markov decision process. Each instance can decide to use or to skip each base classifier, based on the current state of the classifier being built. The result is a sparse decision DAG where the base classifiers are selected in a data-dependent way. The method has a single hyperparameter with a clear semantics of controlling the accuracy/speed trade-off. The algorithm is competitive with state-of-the-art cascade detectors on three object-detection benchmarks, and it clearly outperforms them when there is a small number of base classifiers. Unlike cascades, it is also readily applicable for multi-class classification. Using the multi-class setup, we show on a benchmark web page ranking data set that we can significantly improve the decision speed without harming the performance of the ranker.

Undirected graphical models, also known as Markov random fields or Markov networks, have become a part of the mainstream of statistical theory and application in recent years. These models use graphs to represent conditional independences among sets of random variables. In these graphs, the absence of an edge between two vertices means the corresponding random variables are conditionally independent, given the other variables. Learning the structure of a graph is equivalent to learning if there exists an edge between every pair of nodes in the graph. In the past decade, significant progress has been made on designing efficient algorithms to learn undirected graphs from high-dimensional observational datasets. Most of these methods are based on either the penalized maximum-likelihood estimation or penalized regression methods. Works has focused on the problem of estimating the graph in this high dimensional setting, which becomes feasible if graph is sparse.

Recent work on approximate linear programming (ALP) techniques for first-order Markov Decision Processes (FOMDPs) represents the value function linearly w.r.t. a set of first-order basis functions and uses linear programming techniques to determine suitable weights. This approach offers the advantage that it does not require simplification of the first-order value function, and allows one to solve FOMDPs independent of a specific domain instantiation. In this paper, we address several questions to enhance the applicability of this work: (1) Can we extend the first-order ALP framework to approximate policy iteration to address performance deficiencies of previous approaches? (2) Can we automatically generate basis functions and evaluate their impact on value function quality? (3) How can we decompose intractable problems with universally quantified rewards into tractable subproblems? We propose answers to these questions along with a number of novel optimizations and provide a comparative empirical evaluation on logistics problems from the ICAPS 2004 Probabilistic Planning Competition.

Tasks such as record linkage and multi-target tracking, which involve reconstructing the set of objects that underlie some observed data, are particularly challenging for probabilistic inference. Recent work has achieved efficient and accurate inference on such problems using Markov chain Monte Carlo (MCMC) techniques with customized proposal distributions. Currently, implementing such a system requires coding MCMC state representations and acceptance probability calculations that are specific to a particular application. An alternative approach, which we pursue in this paper, is to use a general-purpose probabilistic modeling language (such as BLOG) and a generic Metropolis-Hastings MCMC algorithm that supports user-supplied proposal distributions. Our algorithm gains flexibility by using MCMC states that are only partial descriptions of possible worlds; we provide conditions under which MCMC over partial worlds yields correct answers to queries. We also show how to use a context-specific Bayes net to identify the factors in the acceptance probability that need to be computed for a given proposed move. Experimental results on a citation matching task show that our general-purpose MCMC engine compares favorably with an application-specific system.

A central task in many applications is reasoning about processes that change in a continuous time. The mathematical framework of Continuous Time Markov Processes provides the basic foundations for modeling such systems. Recently, Nodelman et al introduced continuous time Bayesian networks (CTBNs), which allow a compact representation of continuous-time processes over a factored state space. In this paper, we introduce continuous time Markov networks (CTMNs), an alternative representation language that represents a different type of continuous-time dynamics. In many real life processes, such as biological and chemical systems, the dynamics of the process can be naturally described as an interplay between two forces - the tendency of each entity to change its state, and the overall fitness or energy function of the entire system. In our model, the first force is described by a continuous-time proposal process that suggests possible local changes to the state of the system at different rates. The second force is represented by a Markov network that encodes the fitness, or desirability, of different states; a proposed local change is then accepted with a probability that is a function of the change in the fitness distribution. We show that the fitness distribution is also the stationary distribution of the Markov process, so that this representation provides a characterization of a temporal process whose stationary distribution has a compact graphical representation. This allows us to naturally capture a different type of structure in complex dynamical processes, such as evolving biological sequences. We describe the semantics of the representation, its basic properties, and how it compares to CTBNs. We also provide algorithms for learning such models from data, and discuss its applicability to biological sequence evolution.

A popular approach to solving large probabilistic systems relies on aggregating states based on a measure of similarity. Many approaches in the literature are heuristic. A number of recent methods rely instead on metrics based on the notion of bisimulation, or behavioral equivalence between states (Givan et al, 2001, 2003; Ferns et al, 2004). An integral component of such metrics is the Kantorovich metric between probability distributions. However, while this metric enables many satisfying theoretical properties, it is costly to compute in practice. In this paper, we use techniques from network optimization and statistical sampling to overcome this problem. We obtain in this manner a variety of distance functions for MDP state aggregation, which differ in the tradeoff between time and space complexity, as well as the quality of the aggregation. We provide an empirical evaluation of these trade-offs.

Continuous-time Bayesian networks (CTBNs) are graphical representations of multi-component continuous-time Markov processes as directed graphs. The edges in the network represent direct influences among components. The joint rate matrix of the multi-component process is specified by means of conditional rate matrices for each component separately. This paper addresses the situation where some of the components evolve on a time scale that is much shorter compared to the time scale of the other components. In this paper, we prove that in the limit where the separation of scales is infinite, the Markov process converges (in distribution, or weakly) to a reduced, or effective Markov process that only involves the slow components. We also demonstrate that for reasonable separation of scale (an order of magnitude) the reduced process is a good approximation of the marginal process over the slow components. We provide a simple procedure for building a reduced CTBN for this effective process, with conditional rate matrices that can be directly calculated from the original CTBN, and discuss the implications for approximate reasoning in large systems.

Consider a multi-agent system in a dynamic and uncertain environment. Each agent's local decision problem is modeled as a Markov decision process (MDP) and agents must coordinate on a joint action in each period, which provides a reward to each agent and causes local state transitions. A social planner knows the model of every agent's MDP and wants to implement the optimal joint policy, but agents are self-interested and have private local state. We provide an incentive-compatible mechanism for eliciting state information that achieves the optimal joint plan in a Markov perfect equilibrium of the induced stochastic game. In the special case in which local problems are Markov chains and agents compete to take a single action in each period, we leverage Gittins allocation indices to provide an efficient factored algorithm and distribute computation of the optimal policy among the agents. Distributed, optimal coordinated learning in a multi-agent variant of the multi-armed bandit problem is obtained as a special case.