Markov Models
Fast Sampling-Based Inference in Balanced Neuronal Networks
Guillaume Hennequin, Laurence Aitchison, Mate Lengyel
Multiple lines of evidence support the notion that the brain performs probabilistic inference in multiple cognitive domains, including perception and decision making. There is also evidence that probabilistic inference may be implemented in the brain through the (quasi-)stochastic activity of neural circuits, producing samples from the appropriate posterior distributions, effectively implementing a Markov chain Monte Carlo algorithm. However, time becomes a fundamental bottleneck in such sampling-based probabilistic representations: the quality of inferences depends on how fast the neural circuit generates new, uncorrelated samples from its stationary distribution (the posterior). We explore this bottleneck in a simple, linear-Gaussian latent variable model, in which posterior sampling can be achieved by stochastic neural networks with linear dynamics. The well-known Langevin sampling (LS) recipe, so far the only sampling algorithm for continuous variables of which a neural implementation has been suggested, naturally fits into this dynamical framework. However, we first show analytically and through simulations that the symmetry of the synaptic weight matrix implied by LS yields critically slow mixing when the posterior is high-dimensional. Next, using methods from control theory, we construct and inspect networks that are optimally fast, and hence orders of magnitude faster than LS, while being far more biologically plausible. In these networks, strong - but transient - selective amplification of external noise generates the spatially correlated activity fluctuations prescribed by the posterior. Intriguingly, although a detailed balance of excitation and inhibition is dynamically maintained, detailed balance of Markov chain steps in the resulting sampler is violated, consistent with recent findings on how statistical irreversibility can overcome the speed limitation of random walks in other domains.
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First provide a summary of the paper, and then address the following criteria: Quality, clarity, originality and significance. As a major novelty, the authors propose that the stochasticity of synaptic transmission is directly involved in the implementation of stochasticity necessary for Monte Carlo sampling. The neurons used throughout the paper are binary threshold units and not spiking neurons. These binary neurons are able to provide useful insights into how a neuronal network may solve computational problems, but it is important to distinguish between implementations using binary units and spiking neurons. The authors include a short section about spike-based implementation in the appendix, but they do not demonstrate that the spike based implementation is able to perform the same tasks with similar performance.
Neurons as Monte Carlo Samplers: Bayesian ๏ฟผInference and Learning in Spiking Networks
We propose a spiking network model capable of performing both approximate inference and learning for any hidden Markov model. The lower layer sensory neurons detect noisy measurements of hidden world states. The higher layer neurons with recurrent connections infer a posterior distribution over world states from spike trains generated by sensory neurons. We show how such a neuronal network with synaptic plasticity can implement a form of Bayesian inference similar to Monte Carlo methods such as particle filtering. Each spike in the population of inference neurons represents a sample of a particular hidden world state.
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First provide a summary of the paper, and then address the following criteria: Quality, clarity, originality and significance. The manuscript describes a very interesting model for the analysis of brain states for multi-region LFP time-series. The time-series are separated in different time-windows. An infinite mixture of Gaussian Processes is considered to model the observations in each window. Brain states are assigned to each observation by means of an underlying HDP and brain regions are assigned to clusters by means of a HDP.
Analysis of Brain States from Multi-Region LFP Time-Series
Kyle R. Ulrich, David E. Carlson, Wenzhao Lian, Jana S. Borg, Kafui Dzirasa, Lawrence Carin
The local field potential (LFP) is a source of information about the broad patterns of brain activity, and the frequencies present in these time-series measurements are often highly correlated between regions. It is believed that these regions may jointly constitute a "brain state," relating to cognition and behavior. An infinite hidden Markov model (iHMM) is proposed to model the evolution of brain states, based on electrophysiological LFP data measured at multiple brain regions. A brain state influences the spectral content of each region in the measured LFP . A new state-dependent tensor factorization is employed across brain regions, and the spectral properties of the LFPs are characterized in terms of Gaussian processes (GPs). The LFPs are modeled as a mixture of GPs, with state-and region-dependent mixture weights, and with the spectral content of the data encoded in GP spectral mixture covariance kernels. The model is able to estimate the number of brain states and the number of mixture components in the mixture of GPs. A new variational Bayesian split-merge algorithm is employed for inference. The model infers state changes as a function of external covariates in two novel elec-trophysiological datasets, using LFP data recorded simultaneously from multiple brain regions in mice; the results are validated and interpreted by subject-matter experts.