Characterizing a patient's progression through stages of sepsis is critical for enabling risk stratification and adaptive, personalized treatment. However, commonly used sepsis diagnostic criteria fail to account for significant underlying heterogeneity, both between patients as well as over time in a single patient. We introduce a hidden Markov model of sepsis progression that explicitly accounts for patient heterogeneity. Benchmarked against two sepsis diagnostic criteria, the model provides a useful tool to uncover a patient's latent sepsis trajectory and to identify high-risk patients in whom more aggressive therapy may be indicated.

Rapid advances of hardware-based technologies during the past decades have opened up new possibilities for Life scientists to gather multimodal data in various application domains (e.g., Omics, Bioimaging, Medical Imaging, and [Brain/Body]-Machine Interfaces), thus generating novel opportunities for development of dedicated data intensive machine learning techniques. Overall, recent research in Deep learning (DL), Reinforcement learning (RL), and their combination (Deep RL) promise to revolutionize Artificial Intelligence. The growth in computational power accompanied by faster and increased data storage and declining computing costs have already allowed scientists in various fields to apply these techniques on datasets that were previously intractable for their size and complexity. This review article provides a comprehensive survey on the application of DL, RL, and Deep RL techniques in mining Biological data. In addition, we compare performances of DL techniques when applied to different datasets across various application domains. Finally, we outline open issues in this challenging research area and discuss future development perspectives.

We study density estimation of stationary processes defined over an infinite grid from a single, finite realization. Gaussian Processes and Markov Random Fields avoid the curse of dimensionality by focusing on low-order and localized potentials respectively, but its application to complex datasets is limited by their inability to capture singularities and long-range interactions, and their expensive inference and learning respectively. These are instances of Gibbs models, defined as maximum entropy distributions under moment constraints determined by an energy vector. The Boltzmann equivalence principle states that under appropriate ergodicity, such \emph{macrocanonical} models are approximated by their \emph{microcanonical} counterparts, which replace the expectation by the sample average. Microcanonical models are appealing since they avoid computing expensive Lagrange multipliers to meet the constraints. This paper introduces microcanonical measures whose energy vector is given by a wavelet scattering transform, built by cascading wavelet decompositions and point-wise nonlinearities. We study asymptotic properties of generic microcanonical measures, which reveal the fundamental role of the differential structure of the energy vector in controlling e.g. the entropy rate. Gradient information is also used to define a microcanonical sampling algorithm, for which we provide convergence analysis to the microcanonical measure. Whereas wavelet transforms capture local regularity at different scales, scattering transforms provide scale interaction information, critical to restore the geometry of many physical phenomena. We demonstrate the efficiency of sparse multiscale microcanonical measures on several processes and real data exhibiting long-range interactions, such as Ising, Cox Processes and image and audio textures.

Recommender systems play a crucial role in mitigating the problem of information overload by suggesting users' personalized items or services. The vast majority of traditional recommender systems consider the recommendation procedure as a static process and make recommendations following a fixed strategy. In this paper, we propose a novel recommender system with the capability of continuously improving its strategies during the interactions with users. We model the sequential interactions between users and a recommender system as a Markov Decision Process (MDP) and leverage Reinforcement Learning (RL) to automatically learn the optimal strategies via recommending trial-and-error items and receiving reinforcements of these items from users' feedbacks. In particular, we introduce an online user-agent interacting environment simulator, which can pre-train and evaluate model parameters offline before applying the model online. Moreover, we validate the importance of list-wise recommendations during the interactions between users and agent, and develop a novel approach to incorporate them into the proposed framework LIRD for list-wide recommendations. The experimental results based on a real-world e-commerce dataset demonstrate the effectiveness of the proposed framework.

The Fisher information metric is an important foundation of information geometry, wherein it allows us to approximate the local geometry of a probability distribution. Recurrent neural networks such as the Sequence-to-Sequence (Seq2Seq) networks that have lately been used to yield state-of-the-art performance on speech translation or image captioning have so far ignored the geometry of the latent embedding, that they iteratively learn. We propose the information geometric Seq2Seq (GeoSeq2Seq) network which abridges the gap between deep recurrent neural networks and information geometry. Specifically, the latent embedding offered by a recurrent network is encoded as a Fisher kernel of a parametric Gaussian Mixture Model, a formalism common in computer vision. We utilise such a network to predict the shortest routes between two nodes of a graph by learning the adjacency matrix using the GeoSeq2Seq formalism; our results show that for such a problem the probabilistic representation of the latent embedding supersedes the non-probabilistic embedding by 10-15\%.

Energy consumption for hot water production is a major draw in high efficiency buildings. Optimizing this has typically been approached from a thermodynamics perspective, decoupled from occupant influence. Furthermore, optimization usually presupposes existence of a detailed dynamics model for the hot water system. These assumptions lead to suboptimal energy efficiency in the real world. In this paper, we present a novel reinforcement learning based methodology which optimizes hot water production. The proposed methodology is completely generalizable, and does not require an offline step or human domain knowledge to build a model for the hot water vessel or the heating element. Occupant preferences too are learnt on the fly. The proposed system is applied to a set of 32 houses in the Netherlands where it reduces energy consumption for hot water production by roughly 20% with no loss of occupant comfort. Extrapolating, this translates to absolute savings of roughly 200 kWh for a single household on an annual basis. This performance can be replicated to any domestic hot water system and optimization objective, given that the fairly minimal requirements on sensor data are met. With millions of hot water systems operational worldwide, the proposed framework has the potential to reduce energy consumption in existing and new systems on a multi Gigawatt-hour scale in the years to come.

Abstract--We consider the problem of tracking an intruder using a network of wireless sensors. For tracking the intruder at each instant, the optimal number and the right configuration of sensors has to be powered. As powering the sensors consumes energy, there is a trade off between accurately tracking the position of the intruder at each instant and the energy consumption of sensors. This problem has been formulated in the framework of Partially Observable Markov Decision Process (POMDP) [1]. Even for the simplest model considered in [1], the curse of dimensionality renders the problem intractable. We formulate this problem with a suitable state-action space in the framework of POMDP and develop a reinforcement learning algorithm utilizing the Upper Confidence Tree Search (UCT) method to mitigate the state-action space explosion. Through simulations, we illustrate that our algorithm yields good performance and scales well with the increasing state and action space. I. INTRODUCTION The problem of detecting an intruder (Intrusion Detection (ID) problem) using a network of sensors arises in various applications like tracking the movement of wild animals in the forest, house/shop surveillance for safety and security and so on. In this problem, the objective of the ID system is to track one or more intruders moving in the field of a wireless sensor network (WSN). Typically, WSNs operate on limited power supply.

Feature extraction for automatic classification of EEG signals typically relies on time frequency representations of the signal. Techniques such as cepstral-based filter banks or wavelets are popular analysis techniques in many signal processing applications including EEG classification. In this paper, we present a comparison of a variety of approaches to estimating and postprocessing features. To further aid in discrimination of periodic signals from aperiodic signals, we add a differential energy term. We evaluate our approaches on the TUH EEG Corpus, which is the largest publicly available EEG corpus and an exceedingly challenging task due to the clinical nature of the data. We demonstrate that a variant of a standard filter bank-based approach, coupled with first and second derivatives, provides a substantial reduction in the overall error rate. The combination of differential energy and derivatives produces a 24% absolute reduction in the error rate and improves our ability to discriminate between signal events and background noise. This relatively simple approach proves to be comparable to other popular feature extraction approaches such as wavelets, but is much more computationally efficient.

Clinical electroencephalographic (EEG) data varies significantly depending on a number of operational conditions (e.g., the type and placement of electrodes, the type of electrical grounding used). This investigation explores the statistical differences present in two different referential montages: Linked Ear (LE) and Averaged Reference (AR). Each of these accounts for approximately 45% of the data in the TUH EEG Corpus. In this study, we explore the impact this variability has on machine learning performance. We compare the statistical properties of features generated using these two montages, and explore the impact of performance on our standard Hidden Markov Model (HMM) based classification system. We show that a system trained on LE data significantly outperforms one trained only on AR data (77.2% vs. 61.4%). We also demonstrate that performance of a system trained on both data sets is somewhat compromised (71.4% vs. 77.2%). A statistical analysis of the data suggests that mean, variance and channel normalization should be considered. However, cepstral mean subtraction failed to produce an improvement in performance, suggesting that the impact of these statistical differences is subtler.

Statistical performance bounds for reinforcement learning (RL) algorithms can be critical for high-stakes applications like healthcare. This paper introduces a new framework for theoretically measuring the performance of such algorithms called Uniform-PAC, which is a strengthening of the classical Probably Approximately Correct (PAC) framework. In contrast to the PAC framework, the uniform version may be used to derive high probability regret guarantees and so forms a bridge between the two setups that has been missing in the literature. We demonstrate the benefits of the new framework for finite-state episodic MDPs with a new algorithm that is Uniform-PAC and simultaneously achieves optimal regret and PAC guarantees except for a factor of the horizon.