Bayesian Learning
Semantic-aware Contrastive Learning for More Accurate Semantic Parsing
Wu, Shan, Xin, Chunlei, Chen, Bo, Han, Xianpei, Sun, Le
Since the meaning representations are detailed and accurate annotations which express fine-grained sequence-level semtantics, it is usually hard to train discriminative semantic parsers via Maximum Likelihood Estimation (MLE) in an autoregressive fashion. In this paper, we propose a semantic-aware contrastive learning algorithm, which can learn to distinguish fine-grained meaning representations and take the overall sequence-level semantic into consideration. Specifically, a multi-level online sampling algorithm is proposed to sample confusing and diverse instances. Three semantic-aware similarity functions are designed to accurately measure the distance between meaning representations as a whole. And a ranked contrastive loss is proposed to pull the representations of the semantic-identical instances together and push negative instances away. Experiments on two standard datasets show that our approach achieves significant improvements over MLE baselines and gets state-of-the-art performances by simply applying semantic-aware contrastive learning on a vanilla Seq2Seq model.
Remote patient monitoring using artificial intelligence: Current state, applications, and challenges
Shaik, Thanveer, Tao, Xiaohui, Higgins, Niall, Li, Lin, Gururajan, Raj, Zhou, Xujuan, Acharya, U. Rajendra
The adoption of artificial intelligence (AI) in healthcare is growing rapidly. Remote patient monitoring (RPM) is one of the common healthcare applications that assist doctors to monitor patients with chronic or acute illness at remote locations, elderly people in-home care, and even hospitalized patients. The reliability of manual patient monitoring systems depends on staff time management which is dependent on their workload. Conventional patient monitoring involves invasive approaches which require skin contact to monitor health status. This study aims to do a comprehensive review of RPM systems including adopted advanced technologies, AI impact on RPM, challenges and trends in AI-enabled RPM. This review explores the benefits and challenges of patient-centric RPM architectures enabled with Internet of Things wearable devices and sensors using the cloud, fog, edge, and blockchain technologies. The role of AI in RPM ranges from physical activity classification to chronic disease monitoring and vital signs monitoring in emergency settings. This review results show that AI-enabled RPM architectures have transformed healthcare monitoring applications because of their ability to detect early deterioration in patients' health, personalize individual patient health parameter monitoring using federated learning, and learn human behavior patterns using techniques such as reinforcement learning. This review discusses the challenges and trends to adopt AI to RPM systems and implementation issues. The future directions of AI in RPM applications are analyzed based on the challenges and trends
Reliable amortized variational inference with physics-based latent distribution correction
Siahkoohi, Ali, Rizzuti, Gabrio, Orozco, Rafael, Herrmann, Felix J.
Bayesian inference for high-dimensional inverse problems is computationally costly and requires selecting a suitable prior distribution. Amortized variational inference addresses these challenges via a neural network that approximates the posterior distribution not only for one instance of data, but a distribution of data pertaining to a specific inverse problem. During inference, the neural network -- in our case a conditional normalizing flow -- provides posterior samples at virtually no cost. However, the accuracy of amortized variational inference relies on the availability of high-fidelity training data, which seldom exists in geophysical inverse problems due to the Earth's heterogeneity. In addition, the network is prone to errors if evaluated over out-of-distribution data. As such, we propose to increase the resilience of amortized variational inference in the presence of moderate data distribution shifts. We achieve this via a correction to the latent distribution that improves the posterior distribution approximation for the data at hand. The correction involves relaxing the standard Gaussian assumption on the latent distribution and parameterizing it via a Gaussian distribution with an unknown mean and (diagonal) covariance. These unknowns are then estimated by minimizing the Kullback-Leibler divergence between the corrected and the (physics-based) true posterior distributions. While generic and applicable to other inverse problems, by means of a linearized seismic imaging example, we show that our correction step improves the robustness of amortized variational inference with respect to changes in the number of seismic sources, noise variance, and shifts in the prior distribution. This approach provides a seismic image with limited artifacts and an assessment of its uncertainty at approximately the same cost as five reverse-time migrations.
Inference of Nonlinear Partial Differential Equations via Constrained Gaussian Processes
Li, Zhaohui, Yang, Shihao, Wu, Jeff
Partial differential equations (PDEs) are widely used for description of physical and engineering phenomena. Some key parameters involved in PDEs, which represents certain physical properties with important scientific interpretations, are difficult or even impossible to be measured directly. Estimation of these parameters from noisy and sparse experimental data of related physical quantities is an important task. Many methods for PDE parameter inference involve a large number of evaluations of numerical solution of PDE through algorithms such as finite element method, which can be time-consuming especially for nonlinear PDEs. In this paper, we propose a novel method for estimating unknown parameters in PDEs, called PDE-Informed Gaussian Process Inference (PIGPI). Through modeling the PDE solution as a Gaussian process (GP), we derive the manifold constraints induced by the (linear) PDE structure such that under the constraints, the GP satisfies the PDE. For nonlinear PDEs, we propose an augmentation method that transfers the nonlinear PDE into an equivalent PDE system linear in all derivatives that our PIGPI can handle. PIGPI can be applied to multi-dimensional PDE systems and PDE systems with unobserved components. The method completely bypasses the numerical solver for PDE, thus achieving drastic savings in computation time, especially for nonlinear PDEs. Moreover, the PIGPI method can give the uncertainty quantification for both the unknown parameters and the PDE solution. The proposed method is demonstrated by several application examples from different areas.
Robust Gaussian Process Regression with Huber Likelihood
Gaussian process regression in its most simplified form assumes normal homoscedastic noise and utilizes analytically tractable mean and covariance functions of predictive posterior distribution using Gaussian conditioning. Its hyperparameters are estimated by maximizing the evidence, commonly known as type II maximum likelihood estimation. Unfortunately, Bayesian inference based on Gaussian likelihood is not robust to outliers, which are often present in the observational training data sets. To overcome this problem, we propose a robust process model in the Gaussian process framework with the likelihood of observed data expressed as the Huber probability distribution. The proposed model employs weights based on projection statistics to scale residuals and bound the influence of vertical outliers and bad leverage points on the latent functions estimates while exhibiting a high statistical efficiency at the Gaussian and thick tailed noise distributions. The proposed method is demonstrated by two real world problems and two numerical examples using datasets with additive errors following thick tailed distributions such as Students t, Laplace, and Cauchy distribution.
Scalable Causal Structure Learning: Scoping Review of Traditional and Deep Learning Algorithms and New Opportunities in Biomedicine
Upadhyaya, Pulakesh, Zhang, Kai, Li, Can, Jiang, Xiaoqian, Kim, Yejin
Causal structure learning refers to a process of identifying causal structures from observational data, and it can have multiple applications in biomedicine and health care. This paper provides a practical review and tutorial on scalable causal structure learning models with examples of real-world data to help health care audiences understand and apply them. We reviewed traditional (combinatorial and score-based methods) for causal structure discovery and machine learning-based schemes. We also highlighted recent developments in biomedicine where causal structure learning can be applied to discover structures such as gene networks, brain connectivity networks, and those in cancer epidemiology. We also compared the performance of traditional and machine learning-based algorithms for causal discovery over some benchmark data sets. Machine learning-based approaches, including deep learning, have many advantages over traditional approaches, such as scalability, including a greater number of variables, and potentially being applied in a wide range of biomedical applications, such as genetics, if sufficient data are available. Furthermore, these models are more flexible than traditional models and are poised to positively affect many applications in the future.
SACDNet: Towards Early Type 2 Diabetes Prediction with Uncertainty for Electronic Health Records
Nasir, Tayyab, Malik, Muhammad Kamran
Type 2 diabetes mellitus (T2DM) is one of the most common diseases and a leading cause of death. The problem of early diagnosis of T2DM is challenging and necessary to prevent serious complications. This study proposes a novel neural network architecture for early T2DM prediction using multi-headed self-attention and dense layers to extract features from historic diagnoses, patient vitals, and demographics. The proposed technique is called the Self-Attention for Comorbid Disease Net (SACDNet), achieving an accuracy of 89.3% and an F1-Score of 89.1%, having a 1.6% increased accuracy and 1.3% increased f1-score compared to the baseline techniques. Monte Carlo (MC) Dropout is applied to the SACDNet to get a bayesian approximation. A T2DM prediction framework based on the MC Dropout SACDNet is proposed to quantize the uncertainty associated with the predictions. A T2DM prediction dataset is also built as part of this study which is based on real-world routine Electronic Health Record (EHR) data comprising 4,124 diabetic and 181,767 non-diabetic examples, collected from 295 different EHR systems running in different parts of the United States of America. This dataset is further used to evaluate 7 different machine learning and 3 deep learning-based models. Finally, a detailed analysis of the fairness of every technique against different patient demographic groups is performed to validate the unbiased generalization of the techniques and the diversity of the data.
Discrete Latent Structure in Neural Networks
Niculae, Vlad, Corro, Caio F., Nangia, Nikita, Mihaylova, Tsvetomila, Martins, André F. T.
Many types of data from fields including natural language processing, computer vision, and bioinformatics, are well represented by discrete, compositional structures such as trees, sequences, or matchings. Latent structure models are a powerful tool for learning to extract such representations, offering a way to incorporate structural bias, discover insight about the data, and interpret decisions. However, effective training is challenging, as neural networks are typically designed for continuous computation. This text explores three broad strategies for learning with discrete latent structure: continuous relaxation, surrogate gradients, and probabilistic estimation. Our presentation relies on consistent notations for a wide range of models. As such, we reveal many new connections between latent structure learning strategies, showing how most consist of the same small set of fundamental building blocks, but use them differently, leading to substantially different applicability and properties.
Explain What You See: Open-Ended Segmentation and Recognition of Occluded 3D Objects
Ayoobi, H., Kasaei, H., Cao, M., Verbrugge, R., Verheij, B.
Local-HDP (for Local Hierarchical Dirichlet Process) is a hierarchical Bayesian method that has recently been used for open-ended 3D object category recognition. This method has been proven to be efficient in real-time robotic applications. However, the method is not robust to a high degree of occlusion. We address this limitation in two steps. First, we propose a novel semantic 3D object-parts segmentation method that has the flexibility of Local-HDP. This method is shown to be suitable for open-ended scenarios where the number of 3D objects or object parts is not fixed and can grow over time. We show that the proposed method has a higher percentage of mean intersection over union, using a smaller number of learning instances. Second, we integrate this technique with a recently introduced argumentation-based online incremental learning method, thereby enabling the model to handle a high degree of occlusion. We show that the resulting model produces an explicit set of explanations for the 3D object category recognition task.
A Combinatorial Semi-Bandit Approach to Charging Station Selection for Electric Vehicles
Åkerblom, Niklas, Chehreghani, Morteza Haghir
In this work, we address the problem of long-distance navigation for battery electric vehicles (BEVs), where one or more charging sessions are required to reach the intended destination. We consider the availability and performance of the charging stations to be unknown and stochastic, and develop a combinatorial semi-bandit framework for exploring the road network to learn the parameters of the queue time and charging power distributions. Within this framework, we first outline a pre-processing for the road network graph to handle the constrained combinatorial optimization problem in an efficient way. Then, for the pre-processed graph, we use a Bayesian approach to model the stochastic edge weights, utilizing conjugate priors for the one-parameter exponential and two-parameter gamma distributions, the latter of which is novel to multi-armed bandit literature. Finally, we apply combinatorial versions of Thompson Sampling, BayesUCB and Epsilon-greedy to the problem. We demonstrate the performance of our framework on long-distance navigation problem instances in country-sized road networks, with simulation experiments in Norway, Sweden and Finland.