Real-world data for classification is often labeled by multiple annotators. For analyzing such data, we introduce CROWDLAB, a straightforward approach to utilize any trained classifier to estimate: (1) A consensus label for each example that aggregates the available annotations; (2) A confidence score for how likely each consensus label is correct; (3) A rating for each annotator quantifying the overall correctness of their labels. Existing algorithms to estimate related quantities in crowdsourcing often rely on sophisticated generative models with iterative inference. CROWDLAB instead uses a straightforward weighted ensemble. Existing algorithms often rely solely on annotator statistics, ignoring the features of the examples from which the annotations derive. CROWDLAB utilizes any classifier model trained on these features, and can thus better generalize between examples with similar features. On real-world multi-annotator image data, our proposed method provides superior estimates for (1)-(3) than existing algorithms like Dawid-Skene/GLAD.

This article belongs to the series "Probabilistic Deep Learning". This weekly series covers probabilistic approaches to deep learning. The main goal is to extend deep learning models to quantify uncertainty, i.e., know what they do not know. In this article, we will introduce the concept of probabilistic logistic regression, a powerful technique that allows for the inclusion of uncertainty in the prediction process. We will explore how this approach can lead to more robust and accurate predictions, especially in cases where the data is noisy, or the model is overfitting.

Personalised federated learning (FL) aims at collaboratively learning a machine learning model taylored for each client. Albeit promising advances have been made in this direction, most of existing approaches works do not allow for uncertainty quantification which is crucial in many applications. In addition, personalisation in the cross-device setting still involves important issues, especially for new clients or those having small number of observations. This paper aims at filling these gaps. To this end, we propose a novel methodology coined FedPop by recasting personalised FL into the population modeling paradigm where clients' models involve fixed common population parameters and random effects, aiming at explaining data heterogeneity. To derive convergence guarantees for our scheme, we introduce a new class of federated stochastic optimisation algorithms which relies on Markov chain Monte Carlo methods. Compared to existing personalised FL methods, the proposed methodology has important benefits: it is robust to client drift, practical for inference on new clients, and above all, enables uncertainty quantification under mild computational and memory overheads. We provide non-asymptotic convergence guarantees for the proposed algorithms and illustrate their performances on various personalised federated learning tasks.

The advancement of distributed generation technologies in modern power systems has led to a widespread integration of renewable power generation at customer side. However, the intermittent nature of renewable energy poses new challenges to the network operational planning with underlying uncertainties. This paper proposes a novel Bayesian probabilistic technique for forecasting renewable solar generation by addressing data and model uncertainties by integrating bidirectional long short-term memory (BiLSTM) neural networks while compressing the weight parameters using variational autoencoder (VAE). Existing Bayesian deep learning methods suffer from high computational complexities as they require to draw a large number of samples from weight parameters expressed in the form of probability distributions. The proposed method can deal with uncertainty present in model and data in a more computationally efficient manner by reducing the dimensionality of model parameters. The proposed method is evaluated using quantile loss, reconstruction error, and deterministic forecasting evaluation metrics such as root-mean square error. It is inferred from the numerical results that VAE-Bayesian BiLSTM outperforms other probabilistic and deterministic deep learning methods for solar power forecasting in terms of accuracy and computational efficiency for different sizes of the dataset.

The Expectation Maximization (EM) algorithm is widely used as an iterative modification to maximum likelihood estimation when the data is incomplete. We focus on a semi-supervised case to learn the model from labeled and unlabeled samples. Existing work in the semi-supervised case has focused mainly on performance rather than convergence guarantee, however we focus on the contribution of the labeled samples to the convergence rate. The analysis clearly demonstrates how the labeled samples improve the convergence rate for the exponential family mixture model. In this case, we assume that the population EM (EM with unlimited data) is initialized within the neighborhood of global convergence for the population EM that consists solely of samples that have not been labeled. The analysis for the labeled samples provides a comprehensive description of the convergence rate for the Gaussian mixture model. In addition, we extend the findings for labeled samples and offer an alternative proof for the population EM's convergence rate with unlabeled samples for the symmetric mixture of two Gaussians.

Uncertainty estimation of the trained deep learning networks is valuable for optimizing learning efficiency and evaluating the reliability of network predictions. In this paper, we propose a method for estimating uncertainty in deep learning image classification using test-time mixup augmentation (TTMA). To improve the ability to distinguish correct and incorrect predictions in existing aleatoric uncertainty, we introduce the TTMA data uncertainty (TTMA-DU) by applying mixup augmentation to test data and measuring the entropy of the predicted label histogram. In addition to TTMA-DU, we propose the TTMA class-dependent uncertainty (TTMA-CDU), which captures aleatoric uncertainty specific to individual classes and provides insight into class confusion and class similarity within the trained network. We validate our proposed methods on the ISIC-18 skin lesion diagnosis dataset and the CIFAR-100 real-world image classification dataset. Our experiments show that (1) TTMA-DU more effectively differentiates correct and incorrect predictions compared to existing uncertainty measures due to mixup perturbation, and (2) TTMA-CDU provides information on class confusion and class similarity for both datasets.

In text mining, topic models are a type of probabilistic generative models for inferring latent semantic topics from text corpus. One of the most popular inference approaches to topic models is perhaps collapsed Gibbs sampling (CGS), which typically samples one single topic label for each observed document-word pair. In this paper, we aim at improving the inference of CGS for topic models. We propose to leverage state augmentation technique by maximizing the number of topic samples to infinity, and then develop a new inference approach, called infinite latent state replication (ILR), to generate robust soft topic assignment for each given document-word pair. Experimental results on the publicly available datasets show that ILR outperforms CGS for inference of existing established topic models.

Decision trees are well-known due to their ease of interpretability. To improve accuracy, we need to grow deep trees or ensembles of trees. These are hard to interpret, offsetting their original benefits. Shapley values have recently become a popular way to explain the predictions of tree-based machine learning models. It provides a linear weighting to features independent of the tree structure. The rise in popularity is mainly due to TreeShap, which solves a general exponential complexity problem in polynomial time. Following extensive adoption in the industry, more efficient algorithms are required. This paper presents a more efficient and straightforward algorithm: Linear TreeShap. Like TreeShap, Linear TreeShap is exact and requires the same amount of memory.

Introduction Data imbalance is one of the crucial issues in big data analysis with fewer labels. For example, in real-world healthcare data, spam detection labels, and financial fraud detection datasets. Many data balance methods were introduced to improve machine learning algorithms' performance. Research claims SMOTE and SMOTE-based data-augmentation (generate new data points) methods could improve algorithm performance. However, we found in many online tutorials, the valuation methods were applied based on synthesized datasets that introduced bias into the evaluation, and the performance got a false improvement. In this study, we proposed, a new evaluation framework for imbalanced data learning methods. We have experimented on five data balance methods and whether the performance of algorithms will improve or not. Methods We collected 8 imbalanced healthcare datasets with different imbalanced rates from different domains. Applied 6 data augmentation methods with 11 machine learning methods testing if the data augmentation will help with improving machine learning performance. We compared the traditional data augmentation evaluation methods with our proposed cross-validation evaluation framework Results Using traditional data augmentation evaluation meta hods will give a false impression of improving the performance. However, our proposed evaluation method shows data augmentation has limited ability to improve the results. Conclusion EFIDL is more suitable for evaluating the prediction performance of an ML method when data are augmented. Using an unsuitable evaluation framework will give false results. Future researchers should consider the evaluation framework we proposed when dealing with augmented datasets. Our experiments showed data augmentation does not help improve ML prediction performance.

Phylogenetics is a classical methodology in computational biology that today has become highly relevant for medical investigation of single-cell data, e.g., in the context of cancer development. The exponential size of the tree space is, unfortunately, a substantial obstacle for Bayesian phylogenetic inference using Markov chain Monte Carlo based methods since these rely on local operations. And although more recent variational inference (VI) based methods offer speed improvements, they rely on expensive auto-differentiation operations for learning the variational parameters. We propose VaiPhy, a remarkably fast VI based algorithm for approximate posterior inference in an augmented tree space. VaiPhy produces marginal log-likelihood estimates on par with the state-of-the-art methods on real data and is considerably faster since it does not require auto-differentiation. Instead, VaiPhy combines coordinate ascent update equations with two novel sampling schemes: (i) SLANTIS, a proposal distribution for tree topologies in the augmented tree space, and (ii) the JC sampler, to the best of our knowledge, the first-ever scheme for sampling branch lengths directly from the popular Jukes-Cantor model. We compare VaiPhy in terms of density estimation and runtime. Additionally, we evaluate the reproducibility of the baselines.