Bayes' rule tells us how to invert a causal process in order to update our beliefs in light of new evidence. If the process is believed to have a complex compositional structure, we may observe that the inversion of the whole can be computed piecewise in terms of the component processes. We study the structure of this compositional rule, noting that it relates to the lens pattern in functional programming. Working in a suitably general axiomatic presentation of a category of Markov kernels, we see how we can think of Bayesian inversion as a particular instance of a state-dependent morphism in a fibred category. We discuss the compositional nature of this, formulated as a functor on the underlying category and explore how this can used for a more type-driven approach to statistical inference.

Positive unlabeled learning is a binary classification problem with positive and unlabeled data. It is common in domains where negative labels are costly or impossible to obtain, e.g., medicine and personalized advertising. Most approaches to positive unlabeled learning apply to specific data types (e.g., images, categorical data) and can not generate new positive and negative samples. This work introduces a feature-space distance-based tensor network approach to the positive unlabeled learning problem. The presented method is not domain specific and significantly improves the state-of-the-art results on the MNIST image and 15 categorical/mixed datasets. The trained tensor network model is also a generative model and enables the generation of new positive and negative instances.

We propose a novel Bayesian-Optimistic Frequentist Upper Confidence Bound (BOF-UCB) algorithm for stochastic contextual linear bandits in non-stationary environments. This unique combination of Bayesian and frequentist principles enhances adaptability and performance in dynamic settings. The BOF-UCB algorithm utilizes sequential Bayesian updates to infer the posterior distribution of the unknown regression parameter, and subsequently employs a frequentist approach to compute the Upper Confidence Bound (UCB) by maximizing the expected reward over the posterior distribution. We provide theoretical guarantees of BOF-UCB's performance and demonstrate its effectiveness in balancing exploration and exploitation on synthetic datasets and classical control tasks in a reinforcement learning setting. Our results show that BOF-UCB outperforms existing methods, making it a promising solution for sequential decision-making in non-stationary environments.

Bayesian nonparametric mixture models are widely used to cluster observations. However, one major drawback of the approach is that the estimated partition often presents unbalanced clusters' frequencies with only a few dominating clusters and a large number of sparsely-populated ones. This feature translates into results that are often uninterpretable unless we accept to ignore a relevant number of observations and clusters. Interpreting the posterior distribution as penalized likelihood, we show how the unbalance can be explained as a direct consequence of the cost functions involved in estimating the partition. In light of our findings, we propose a novel Bayesian estimator of the clustering configuration. The proposed estimator is equivalent to a post-processing procedure that reduces the number of sparsely-populated clusters and enhances interpretability. The procedure takes the form of entropy-regularization of the Bayesian estimate. While being computationally convenient with respect to alternative strategies, it is also theoretically justified as a correction to the Bayesian loss function used for point estimation and, as such, can be applied to any posterior distribution of clusters, regardless of the specific model used.

Traffic simulation software is used by transportation researchers and engineers to design and evaluate changes to roadways. These simulators are driven by models of microscopic driver behavior from which macroscopic measures like flow and congestion can be derived. Many models are designed for a subset of possible traffic scenarios and roadway configurations, while others have no explicit constraints on their application. Work zones (WZs) are one scenario for which no model to date has reproduced realistic driving behavior. This makes it difficult to optimize for safety and other metrics when designing a WZ. The Federal Highway Administration commissioned the USDOT Volpe Center to develop a car-following (CF) model for use in microscopic simulators that can capture and reproduce driver behavior accurately within and outside of WZs. Volpe also performed a naturalistic driving study to collect telematics data from vehicles driven on roads with WZs for use in model calibration. During model development, Volpe researchers observed difficulties in calibrating their model, leaving them to question whether there existed flaws in their model, in the data, or in the procedure used to calibrate the model using the data. In this thesis, I use Bayesian methods for data analysis and parameter estimation to explore and, where possible, address these questions. First, I use Bayesian inference to measure the sufficiency of the size of the data set. Second, I compare the procedure and results of the genetic algorithm based calibration performed by the Volpe researchers with those of Bayesian calibration. Third, I explore the benefits of modeling CF hierarchically. Finally, I apply what was learned in the first three phases using an established CF model, Wiedemann 99, to the probabilistic modeling of the Volpe model. Validation is performed using information criteria as an estimate of predictive accuracy.

Large offline learning-based models have enabled robots to successfully interact with objects for a wide variety of tasks. However, these models rely on fairly consistent structured environments. For more unstructured environments, an online learning component is necessary to gather and estimate information about objects in the environment in order to successfully interact with them. Unfortunately, online learning methods like Bayesian non-parametric models struggle with changes in the environment, which is often the desired outcome of interaction-based tasks. We propose using an object-centric representation for interactive online learning. This representation is generated by transforming the robot's actions into the object's coordinate frame. We demonstrate how switching to this task-relevant space improves our ability to reason with the training data collected online, enabling scalable online learning of robot-object interactions. We showcase our method by successfully navigating a manipulator arm through an environment with multiple unknown objects without violating interaction-based constraints.

The transferability of adversarial examples across deep neural networks (DNNs) is the crux of many black-box attacks. Many prior efforts have been devoted to improving the transferability via increasing the diversity in inputs of some substitute models. In this paper, by contrast, we opt for the diversity in substitute models and advocate to attack a Bayesian model for achieving desirable transferability. Deriving from the Bayesian formulation, we develop a principled strategy for possible finetuning, which can be combined with many off-the-shelf Gaussian posterior approximations over DNN parameters. Extensive experiments have been conducted to verify the effectiveness of our method, on common benchmark datasets, and the results demonstrate that our method outperforms recent state-of-the-arts by large margins (roughly 19% absolute increase in average attack success rate on ImageNet), and, by combining with these recent methods, further performance gain can be obtained. The adversarial vulnerability of deep neural networks (DNNs) has attracted great attention (Szegedy et al., 2014; Goodfellow et al., 2015; Papernot et al., 2016; Carlini & Wagner, 2017; Madry et al., 2018; Athalye et al., 2018). It has been demonstrated that the prediction of state-of-the-art DNNs can be arbitrarily altered by adding perturbations, even imperceptible to human eyes, to their inputs. Threat models concerning adversarial examples can be divided into white-box and black-box ones according to the amount of information (of victim models) being exposed to the attacker. In blackbox attacks, where the attacker can hardly get access to the architecture and parameters of the victim model, the transferability of adversarial examples is often relied on, given the fact that adversarial examples crafted on a substitute model can sometimes fool other models as well.

Reinforcement Learning (RL) Sutton and Barto [2018] and Probabilistic planning Puterman [2014] are two research branches that address stochastic problems, often under the Markov assumption for state dynamics. The planning approach requires a given model, while the learning approach improves through repeated interaction with an environment, which can be viewed as a black box. Thus, the tools and the benchmarks for these two branches have grown apart. Learning agents do not require to be able to simulate model-based transitions, and thus frameworks such as OpenAI Gym Brockman et al. [2016] have become a standard, serving also as an interface for third-party benchmarks such as Todorov et al. [2012], Bellemare et al. [2013] and more. As the model is not necessary for solving the learning problem, the environments are hard-coded in a programming language. This has several downsides; if one does wish to see the model describing the environment, it has to be reverse-engineered from the environment framework, complex problems can result in a significant development period, code bugs may make their way into the environment and finally, there is no clean way to verify the model or reuse it directly. Thus, the creation of a verified acceptable benchmark is a challenging task. Planning agents on the other hand can interact with an environment Sanner [2010a], but in many cases simulate the model within the planning agent in order to solve the problem Keller and Eyerich [2012]. The planning community has also come up with formal description languages for various types of problems; these include the Planning Domain Definition Language (PDDL) Aeronautiques et al. [1998] for classical planning problems, PDDL2.1 Fox and Long [2003] for problems involving time and continuous variables, PPDDL Bryce and Buet [2008] for classical planning problems with action probabilistic effects and rewards, and Relational Dynamic Influence Diagram Language (RDDL)

Uncertainty approximation in text classification is an important area with applications in domain adaptation and interpretability. One of the most widely used uncertainty approximation methods is Monte Carlo (MC) Dropout, which is computationally expensive as it requires multiple forward passes through the model. A cheaper alternative is to simply use the softmax based on a single forward pass without dropout to estimate model uncertainty. However, prior work has indicated that these predictions tend to be overconfident. In this paper, we perform a thorough empirical analysis of these methods on five datasets with two base neural architectures in order to identify the trade-offs between the two. We compare both softmax and an efficient version of MC Dropout on their uncertainty approximations and downstream text classification performance, while weighing their runtime (cost) against performance (benefit). We find that, while MC dropout produces the best uncertainty approximations, using a simple softmax leads to competitive and in some cases better uncertainty estimation for text classification at a much lower computational cost, suggesting that softmax can in fact be a sufficient uncertainty estimate when computational resources are a concern.

In the context of digital twins, structural health monitoring (SHM) constitutes the backbone of condition-based maintenance, facilitating the interconnection between virtual and physical assets. Guided wave propagation (GWP) is commonly employed for the inspection of structures in SHM. However, GWP is sensitive to variations in the material properties of the structure, leading to false alarms. In this direction, uncertainty quantification (UQ) is regularly applied to improve the reliability of predictions. Computational mechanics is a useful tool for the simulation of GWP, and is often applied for UQ. Even so, the application of UQ methods requires numerous simulations, while large-scale, transient numerical GWP solutions increase the computational cost. Reduced order models (ROMs) are commonly employed to provide numerical results in a limited amount of time. In this paper, we propose a machine learning (ML)-based ROM, mentioned as BO-ML-ROM, to decrease the computational time related to the simulation of the GWP. The ROM is integrated with a Bayesian optimization (BO) framework, to adaptively sample the parameters for the ROM training. The finite element method is used for the simulation of the high-fidelity models. The formulated ROM is used for forward UQ of the GWP in an aluminum plate with varying material properties. To determine the influence of each parameter perturbation, a global, variance-based sensitivity analysis is implemented based on Sobol' indices. It is shown that Bayesian optimization outperforms one-shot sampling methods, both in terms of accuracy and speed-up. The predicted results reveal the efficiency of BO-ML-ROM for GWP and demonstrate its value for UQ.