Based on the framework of Conformal Prediction (CP), we study the online construction of valid confidence sets given a black-box machine learning model. By converting the target confidence levels into quantile levels, the problem can be reduced to predicting the quantiles (in hindsight) of a sequentially revealed data sequence. Two very different approaches have been studied previously. (i) Direct approach: Assuming the data sequence is iid or exchangeable, one could maintain the empirical distribution of the observed data as an algorithmic belief, and directly predict its quantiles. (ii) Indirect approach: As statistical assumptions often do not hold in practice, a recent trend is to consider the adversarial setting and apply first-order online optimization to moving quantile losses (Gibbs & Cand\`es, 2021). It requires knowing the target quantile level beforehand, and suffers from certain validity issues on the obtained confidence sets, due to the associated loss linearization. This paper presents a novel Bayesian CP framework that combines their strengths. Without any statistical assumption, it is able to both: (i) answer multiple arbitrary confidence level queries online, with provably low regret; and (ii) overcome the validity issues suffered by first-order optimization baselines, due to being "data-centric" rather than "iterate-centric". From a technical perspective, our key idea is to regularize the algorithmic belief of the above direct approach by a Bayesian prior, which "robustifies" it by simulating a non-linearized Follow the Regularized Leader (FTRL) algorithm on the output. For statisticians, this can be regarded as an online adversarial view of Bayesian inference. Importantly, the proposed belief update backbone is shared by prediction heads targeting different confidence levels, bringing practical benefits analogous to U-calibration (Kleinberg et al., 2023).

A new model, named as deep dynamic poisson factorization model, is proposed in this paper for analyzing sequential count vectors. The model based on the Poisson Factor Analysis method captures dependence among time steps by neural networks, representing the implicit distributions. Local complicated relationship is obtained from local implicit distribution, and deep latent structure is exploited to get the long-time dependence. Variational inference on latent variables and gradient descent based on the loss functions derived from variational distribution is performed in our inference. Synthetic datasets and real-world datasets are applied to the proposed model and our results show good predicting and fitting performance with interpretable latent structure.

Learning directed acyclic graphs using both observational and interventional data is now a fundamentally important problem due to recent technological developments in genomics that generate such single-cell gene expression data at a very large scale. In order to utilize this data for learning gene regulatory networks, efficient and reliable causal inference algorithms are needed that can make use of both observational and interventional data. In this paper, we present two algorithms of this type and prove that both are consistent under the faithfulness assumption. These algorithms are interventional adaptations of the Greedy SP algorithm and are the first algorithms using both observational and interventional data with consistency guarantees. Moreover, these algorithms have the advantage that they are nonparametric, which makes them useful also for analyzing non-Gaussian data. In this paper, we present these two algorithms and their consistency guarantees, and we analyze their performance on simulated data, protein signaling data, and single-cell gene expression data.

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the logpartition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

We present a factorized hierarchical variational autoencoder, which learns disentangled and interpretable representations from sequential data without supervision. Specifically, we exploit the multi-scale nature of information in sequential data by formulating it explicitly within a factorized hierarchical graphical model that imposes sequence-dependent priors and sequence-independent priors to different sets of latent variables. The model is evaluated on two speech corpora to demonstrate, qualitatively, its ability to transform speakers or linguistic content by manipulating different sets of latent variables; and quantitatively, its ability to outperform an i-vector baseline for speaker verification and reduce the word error rate by as much as 35% in mismatched train/test scenarios for automatic speech recognition tasks.

Generalized linear models (GLMs)--such as logistic regression, Poisson regression, and robust regression--provide interpretable models for diverse data types. Probabilistic approaches, particularly Bayesian ones, allow coherent estimates of uncertainty, incorporation of prior information, and sharing of power across experiments via hierarchical models. In practice, however, the approximate Bayesian methods necessary for inference have either failed to scale to large data sets or failed to provide theoretical guarantees on the quality of inference. We propose a new approach based on constructing polynomial approximate sufficient statistics for GLMs (PASS-GLM). We demonstrate that our method admits a simple algorithm as well as trivial streaming and distributed extensions that do not compound error across computations. We provide theoretical guarantees on the quality of point (MAP) estimates, the approximate posterior, and posterior mean and uncertainty estimates. We validate our approach empirically in the case of logistic regression using a quadratic approximation and show competitive performance with stochastic gradient descent, MCMC, and the Laplace approximation in terms of speed and multiple measures of accuracy--including on an advertising data set with 40 million data points and 20,000 covariates.

We present a novel training framework for neural sequence models, particularly for grounded dialog generation. The standard training paradigm for these models is maximum likelihood estimation (MLE), or minimizing the cross-entropy of the human responses. Across a variety of domains, a recurring problem with MLE trained generative neural dialog models (G) is that they tend to produce'safe' and generic responses ('I don't know', 'I can't tell'). In contrast, discriminative dialog models (D) that are trained to rank a list of candidate human responses outperform their generative counterparts; in terms of automatic metrics, diversity, and informativeness of the responses. However, D is not useful in practice since it can not be deployed to have real conversations with users. Our work aims to achieve the best of both worlds - the practical usefulness of G and the strong performance of D - via knowledge transfer from D to G. Our primary contribution is an end-to-end trainable generative visual dialog model, where G receives gradients from D as a perceptual (not adversarial) loss of the sequence sampled from G. We leverage the recently proposed Gumbel-Softmax (GS) approximation to the discrete distribution - specifically, a RNN augmented with a sequence of GS samplers, coupled with the straight-through gradient estimator to enable end-to-end differentiability. We also introduce a stronger encoder for visual dialog, and employ a self-attention mechanism for answer encoding along with a metric learning loss to aid D in better capturing semantic similarities in answer responses. Overall, our proposed model outperforms state-of-the-art on the VisDial dataset by a significant margin (2.67% on recall@10).

Deep neural networks (DNNs) and probabilistic graphical models (PGMs) are the two main tools for statistical modeling. While DNNs provide the ability to model rich and complex relationships between input and output variables, PGMs provide the ability to encode dependencies among the output variables themselves. End-to-end training methods for models with structured graphical dependencies on top of neural predictions have recently emerged as a principled way of combining these two paradigms. While these models have proven to be powerful in discriminative settings with discrete outputs, extensions to structured continuous spaces, as well as performing efficient inference in these spaces, are lacking. We propose non-parametric structured output networks (NSON), a modular approach that cleanly separates a non-parametric, structured posterior representation from a discriminative inference scheme but allows joint end-to-end training of both components. Our experiments evaluate the ability of NSONs to capture structured posterior densities (modeling) and to compute complex statistics of those densities (inference). We compare our model to output spaces of varying expressiveness and popular variational and sampling-based inference algorithms.

Deep networks trained on large-scale data can learn transferable features to promote learning multiple tasks. Since deep features eventually transition from general to specific along deep networks, a fundamental problem of multi-task learning is how to exploit the task relatedness underlying parameter tensors and improve feature transferability in the multiple task-specific layers. This paper presents Multilinear Relationship Networks (MRN) that discover the task relationships based on novel tensor normal priors over parameter tensors of multiple task-specific layers in deep convolutional networks. By jointly learning transferable features and multilinear relationships of tasks and features, MRN is able to alleviate the dilemma of negativetransfer in the feature layers and under-transfer in the classifier layer. Experiments show that MRN yields state-of-the-art results on three multi-task learning datasets.

We consider the problem of non-parametric Conditional Independence testing (CI testing) for continuous random variables. Given i.i.d samples from the joint distribution f(x, y, z) of continuous random vectors X, Y and Z, we determine whether X? Y |Z. We approach this by converting the conditional independence test into a classification problem. This allows us to harness very powerful classifiers like gradient-boosted trees and deep neural networks. These models can handle complex probability distributions and allow us to perform significantly better compared to the prior state of the art, for high-dimensional CI testing.