An important goal in cancer research is the survival prognosis of a patient based on a minimal panel of genomic and molecular markers such as genes or proteins. Purely data-driven models without any biological knowledge can produce non-interpretable results. We propose a penalized semiparametric Bayesian Cox model with graph-structured selection priors for sparse identification of multi-omics features by making use of a biologically meaningful graph via a Markov random field (MRF) prior to capturing known relationships between multi-omics features. Since the fixed graph in the MRF prior is for the prior probability distribution, it is not a hard constraint to determine variable selection, so the proposed model can verify known information and has the potential to identify new and novel biomarkers for drawing new biological knowledge. Our simulation results show that the proposed Bayesian Cox model with graph-based prior knowledge results in more trustable and stable variable selection and non-inferior survival prediction, compared to methods modeling the covariates independently without any prior knowledge. The results also indicate that the performance of the proposed model is robust to a partially correct graph in the MRF prior, meaning that in a real setting where not all the true network information between covariates is known, the graph can still be useful. The proposed model is applied to the primary invasive breast cancer patients data in The Cancer Genome Atlas project.

Effective uncertainty quantification is important for training modern predictive models with limited data, enhancing both accuracy and robustness. While Bayesian methods are effective for this purpose, they can be challenging to scale. When employing approximate Bayesian inference, ensuring the quality of samples from the posterior distribution in a computationally efficient manner is essential. This paper addresses the estimation of the Bayesian posterior to generate diverse samples by approximating the gradient flow of the Kullback-Leibler (KL) divergence and the cross entropy of the target approximation under the metric induced by the Stein Operator. It presents empirical evaluations on classification tasks to assess the method's performance and discuss its effectiveness for Model-Based Reinforcement Learning that uses uncertainty-aware network dynamics models.

This paper introduces the Heteroscedastic AddiVortes model, a Bayesian non-parametric regression framework that simultaneously models the conditional mean and variance of a response variable using adaptive Voronoi tessellations. By employing a sum-of-tessellations approach for the mean and a product-of-tessellations approach for the variance, the model provides a flexible and interpretable means to capture complex, predictor-dependent relationships and heteroscedastic patterns in data. This dual-layer representation enables precise inference, even in high-dimensional settings, while maintaining computational feasibility through efficient Markov Chain Monte Carlo (MCMC) sampling and conjugate prior structures. We illustrate the model's capability through both simulated and real-world datasets, demonstrating its ability to capture nuanced variance structures, provide reliable predictive uncertainty quantification, and highlight key predictors influencing both the mean response and its variability. Empirical results show that the Heteroscedastic AddiVortes model offers a substantial improvement in capturing distributional properties compared to both homoscedastic and heteroscedastic alternatives, making it a robust tool for complex regression problems in various applied settings.

In this paper, we present the amortized optimal transport filter (A-OTF) designed to mitigate the computational burden associated with the real-time training of optimal transport filters (OTFs). OTFs can perform accurate non-Gaussian Bayesian updates in the filtering procedure, but they require training at every time step, which makes them expensive. The proposed A-OTF framework exploits the similarity between OTF maps during an initial/offline training stage in order to reduce the cost of inference during online calculations. More precisely, we use clustering algorithms to select relevant subsets of pre-trained maps whose weighted average is used to compute the A-OTF model akin to a mixture of experts. A series of numerical experiments validate that A-OTF achieves substantial computational savings during online inference while preserving the inherent flexibility and accuracy of OTF.

Effectively understanding and managing CVD requires advanced diagnostic tools capable of accurately characterizing complex hemodynamics within the cardiovascular system. While medical imaging modalities such as computed tomography (CT) and magnetic resonance imaging (MRI) provide high-resolution anatomical detail, they lack the capability to directly capture hemodynamics information (e.g., blood flow patterns, pressure, and wall shear stress fields) critical for understanding vascular function and pathology. To bridge this gap, image-based computational fluid dynamics (CFD) has emerged as a powerful computational paradigm that derives hemodynamic information from anatomical images via conservation laws. Although widely utilized in cardiovascular research, the clinical application of image-based CFD for diagnosis and surgical planning remains limited, largely due to the challenges associated with efficient and accurate model construction [2-4]. Constructing patient-specific vascular models for image-based CFD involves multiple steps, including image segmentation, geometry modeling, and mesh generation for the computational domain, all of which are critical to ensuring the fidelity of the final simulation results. However, the standard workflow heavily relies on manual methods, making it highly labor-intensive and time-consuming.

Ensuring safe interactions between autonomous vehicles (AVs) and human drivers in mixed traffic systems remains a major challenge, particularly in complex, high-risk scenarios. This paper presents a cognition-decision framework that integrates individual variability and commonalities in driver behavior to quantify risk cognition and model dynamic decision-making. First, a risk sensitivity model based on a multivariate Gaussian distribution is developed to characterize individual differences in risk cognition. Then, a cognitive decision-making model based on the drift diffusion model (DDM) is introduced to capture common decision-making mechanisms in highrisk environments. The DDM dynamically adjusts decision thresholds by integrating initial bias, drift rate, and boundary parameters, adapting to variations in speed, relative distance, and risk sensitivity to reflect diverse driving styles and risk preferences. By simulating high-risk scenarios with lateral, longitudinal, and multidimensional risk sources in a driving simulator, the proposed model accurately predicts cognitive responses and decision behaviors during emergency maneuvers. Specifically, by incorporating driver-specific risk sensitivity, the model enables dynamic adjustments of key DDM parameters, allowing for personalized decision-making representations in diverse scenarios. Comparative analysis with IDM, Gipps, and MOBIL demonstrates that DDM more precisely captures human cognitive processes and adaptive decision-making in high-risk scenarios. These findings provide a theoretical basis for modeling human driving behavior and offer critical insights for enhancing AV-human interaction in real-world traffic environments. Introduction Driving safety is directly influenced by drivers' risk cognition and collision avoidance decisionmaking abilities in high-risk scenarios. In real-world driving, risk cognition generally involves complex interactions among multiple co-existing risk factors rather than being limited to a single risk source (Crosato et al., 2024; Huang et al., 2022).

Text-to-image latent diffusion models (LDMs) have recently emerged as powerful generative models with great potential for solving inverse problems in imaging. However, leveraging such models in a Plug & Play (PnP), zero-shot manner remains challenging because it requires identifying a suitable text prompt for the unknown image of interest. Also, existing text-to-image PnP approaches are highly computationally expensive. We herein address these challenges by proposing a novel PnP inference paradigm specifically designed for embedding generative models within stochastic inverse solvers, with special attention to Latent Consistency Models (LCMs), which distill LDMs into fast generators. We leverage our framework to propose LAtent consisTency INverse sOlver (LATINO), the first zero-shot PnP framework to solve inverse problems with priors encoded by LCMs. Our conditioning mechanism avoids automatic differentiation and reaches SOTA quality in as little as 8 neural function evaluations. As a result, LATINO delivers remarkably accurate solutions and is significantly more memory and computationally efficient than previous approaches. We then embed LATINO within an empirical Bayesian framework that automatically calibrates the text prompt from the observed measurements by marginal maximum likelihood estimation. Extensive experiments show that prompt self-calibration greatly improves estimation, allowing LATINO with PRompt Optimization to define new SOTAs in image reconstruction quality and computational efficiency.

Simulation-based Bayesian inference (SBI) methods are widely used for parameter estimation in complex models where evaluating the likelihood is challenging but generating simulations is relatively straightforward. However, these methods commonly assume that the simulation model accurately reflects the true data-generating process, an assumption that is frequently violated in realistic scenarios. In this paper, we focus on the challenges faced by SBI methods under model misspecification. We consolidate recent research aimed at mitigating the effects of misspecification, highlighting three key strategies: i) robust summary statistics, ii) generalised Bayesian inference, and iii) error modelling and adjustment parameters. To illustrate both the vulnerabilities of popular SBI methods and the effectiveness of misspecification-robust alternatives, we present empirical results on an illustrative example.

Moralisation and Triangulation are transformations allowing to switch between different ways of factoring a probability distribution into a graphical model. Moralisation allows to view a Bayesian network (a directed model) as a Markov network (an undirected model), whereas triangulation works in the opposite direction. We present a categorical framework where these transformations are modelled as functors between a category of Bayesian networks and one of Markov networks. The two kinds of network (the objects of these categories) are themselves represented as functors, from a `syntax' domain to a `semantics' codomain. Notably, moralisation and triangulation are definable inductively on such syntax, and operate as a form of functor pre-composition. This approach introduces a modular, algebraic perspective in the theory of probabilistic graphical models.

Understanding factors triggering or preventing undesirable health outcomes across patient subpopulations is essential for designing targeted interventions. While randomized controlled trials and expert-led patient interviews are standard methods for identifying these factors, they can be time-consuming and infeasible. Causal discovery offers an alternative to conventional approaches by generating cause-and-effect hypotheses from observational data. However, it often relies on strong or untestable assumptions, which can limit its practical application. This work aims to make causal discovery more practical by considering multiple assumptions and identifying heterogeneous effects. We formulate the problem of discovering causes and effect modifiers of an outcome, where effect modifiers are contexts (e.g., age groups) with heterogeneous causal effects. Then, we present a novel, end-to-end framework that incorporates an ensemble of causal discovery algorithms and estimation of heterogeneous effects to discover causes and effect modifiers that trigger or inhibit the outcome. We demonstrate that the ensemble approach improves robustness by enhancing recall of causal factors while maintaining precision. Our study examines the causes of repeat emergency room visits for diabetic patients and hospital readmissions for ICU patients. Our framework generates causal hypotheses consistent with existing literature and can help practitioners identify potential interventions and patient subpopulations to focus on.