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 Bayesian Learning


Improving LoRA with Variational Learning

arXiv.org Machine Learning

Bayesian methods have recently been used to improve LoRA finetuning and, although they improve calibration, their effect on other metrics (such as accuracy) is marginal and can sometimes even be detrimental. Moreover, Bayesian methods also increase computational overheads and require additional tricks for them to work well. Here, we fix these issues by using a recently proposed variational algorithm called IVON. We show that IVON is easy to implement and has similar costs to AdamW, and yet it can also drastically improve many metrics by using a simple posterior pruning technique. We present extensive results on billion-scale LLMs (Llama and Qwen series) going way beyond the scale of existing applications of IVON. For example, we finetune a Llama-3.2-3B model on a set of commonsense reasoning tasks and improve accuracy over AdamW by 1.3% and reduce ECE by 5.4%, outperforming AdamW and other recent Bayesian methods like Laplace-LoRA and BLoB. Overall, our results show that variational learning with IVON can effectively improve LoRA finetuning.


Bayesian Hybrid Machine Learning of Gallstone Risk

arXiv.org Machine Learning

Gallstone disease is a complex, multifactorial condition with significant global health burdens. Identifying underlying risk factors and their interactions is crucial for early diagnosis, targeted prevention, and effective clinical management. Although logistic regression remains a standard tool for assessing associations between predictors and gallstone status, it often underperforms in high-dimensional settings and may fail to capture intricate relationships among variables. To address these limitations, we propose a hybrid machine learning framework that integrates robust variable selection with advanced interaction detection. Specifically, Adaptive LASSO is employed to identify a sparse and interpretable subset of influential features, followed by Bayesian Additive Regression Trees (BART) to model nonlinear effects and uncover key interactions. Selected interactions are further characterized by physiological knowledge through differential equation-informed interaction terms, grounding the model in biologically plausible mechanisms. The insights gained from these steps are then integrated into a final logistic regression model within a Bayesian framework, providing a balance between predictive accuracy and clinical interpretability. This proposed framework not only enhances prediction but also yields actionable insights, offering a valuable support tool for medical research and decision-making.


Bridging Unsupervised and Semi-Supervised Anomaly Detection: A Theoretically-Grounded and Practical Framework with Synthetic Anomalies

arXiv.org Machine Learning

Anomaly detection (AD) is a critical task across domains such as cybersecurity and healthcare. In the unsupervised setting, an effective and theoretically-grounded principle is to train classifiers to distinguish normal data from (synthetic) anomalies. We extend this principle to semi-supervised AD, where training data also include a limited labeled subset of anomalies possibly present in test time. We propose a theoretically-grounded and empirically effective framework for semi-supervised AD that combines known and synthetic anomalies during training. To analyze semi-supervised AD, we introduce the first mathematical formulation of semi-supervised AD, which generalizes unsupervised AD. Here, we show that synthetic anomalies enable (i) better anomaly modeling in low-density regions and (ii) optimal convergence guarantees for neural network classifiers -- the first theoretical result for semi-supervised AD. We empirically validate our framework on five diverse benchmarks, observing consistent performance gains. These improvements also extend beyond our theoretical framework to other classification-based AD methods, validating the generalizability of the synthetic anomaly principle in AD.


Knowledge Adaptation as Posterior Correction

arXiv.org Machine Learning

Adaptation is the holy grail of intelligence, but even the best AI models (like GPT) lack the adaptivity of toddlers. So the question remains: how can machines adapt quickly? Despite a lot of progress on model adaptation to facilitate continual and federated learning, as well as model merging, editing, unlearning, etc., little is known about the mechanisms by which machines can naturally learn to adapt in a similar way as humans and animals. Here, we show that all such adaptation methods can be seen as different ways of `correcting' the approximate posteriors. More accurate posteriors lead to smaller corrections, which in turn imply quicker adaptation. The result is obtained by using a dual-perspective of the Bayesian Learning Rule of Khan and Rue (2023) where interference created during adaptation is characterized by the natural-gradient mismatch over the past data. We present many examples to demonstrate the use of posterior-correction as a natural mechanism for the machines to learn to adapt quickly.


Graph-Convolutional-Beta-VAE for Synthetic Abdominal Aorta Aneurysm Generation

arXiv.org Artificial Intelligence

Synthetic data generation plays a crucial role in medical research by mitigating privacy concerns and enabling large-scale patient data analysis. This study presents a beta-Variational Autoencoder Graph Convolutional Neural Network framework for generating synthetic Abdominal Aorta Aneurysms (AAA). Using a small real-world dataset, our approach extracts key anatomical features and captures complex statistical relationships within a compact disentangled latent space. To address data limitations, low-impact data augmentation based on Procrustes analysis was employed, preserving anatomical integrity. The generation strategies, both deterministic and stochastic, manage to enhance data diversity while ensuring realism. Compared to PCA-based approaches, our model performs more robustly on unseen data by capturing complex, nonlinear anatomical variations. This enables more comprehensive clinical and statistical analyses than the original dataset alone. The resulting synthetic AAA dataset preserves patient privacy while providing a scalable foundation for medical research, device testing, and computational modeling.


What's in the Box? Reasoning about Unseen Objects from Multimodal Cues

arXiv.org Artificial Intelligence

People regularly make inferences about objects in the world that they cannot see by flexibly integrating information from multiple sources: auditory and visual cues, language, and our prior beliefs and knowledge about the scene. How are we able to so flexibly integrate many sources of information to make sense of the world around us, even if we have no direct knowledge? In this work, we propose a neurosymbolic model that uses neural networks to parse open-ended multi-modal inputs and then applies a Bayesian model to integrate different sources of information to evaluate different hypotheses. We evaluate our model with a novel object guessing game called "What's in the Box?" where humans and models watch a video clip of an experimenter shaking boxes and then try to guess the objects inside the boxes. Through a human experiment, we show that our model correlates strongly with human judgments, whereas unimodal ablated models and large multi-modal neural model baselines showed poor correlation.


Discovering Temporal Structure: An Overview of Hierarchical Reinforcement Learning

arXiv.org Artificial Intelligence

Developing agents capable of exploring, planning and learning in complex open-ended environments is a grand challenge in artificial intelligence (AI). Hierarchical reinforcement learning (HRL) offers a promising solution to this challenge by discovering and exploiting the temporal structure within a stream of experience. The strong appeal of the HRL framework has led to a rich and diverse body of literature attempting to discover a useful structure. However, it is still not clear how one might define what constitutes good structure in the first place, or the kind of problems in which identifying it may be helpful. This work aims to identify the benefits of HRL from the perspective of the fundamental challenges in decision-making, as well as highlight its impact on the performance trade-offs of AI agents. Through these benefits, we then cover the families of methods that discover temporal structure in HRL, ranging from learning directly from online experience to offline datasets, to leveraging large language models (LLMs). Finally, we highlight the challenges of temporal structure discovery and the domains that are particularly well-suited for such endeavours.


Sketched Sum-Product Networks for Joins

arXiv.org Artificial Intelligence

Sketches have shown high accuracy in multi-way join cardinality estimation, a critical problem in cost-based query optimization. Accurately estimating the cardinality of a join operation -- analogous to its computational cost -- allows the optimization of query execution costs in relational database systems. However, although sketches have shown high efficacy in query optimization, they are typically constructed specifically for predefined selections in queries that are assumed to be given a priori, hindering their applicability to new queries. As a more general solution, we propose for Sum-Product Networks to dynamically approximate sketches on-the-fly. Sum-Product Networks can decompose and model multivariate distributions, such as relations, as linear combinations of multiple univariate distributions. By representing these univariate distributions as sketches, Sum-Product Networks can combine them element-wise to efficiently approximate the sketch of any query selection. These approximate sketches can then be applied to join cardinality estimation. In particular, we implement the Fast-AGMS and Bound Sketch methods, which have successfully been used in prior work, despite their costly construction. By accurately approximating them instead, our work provides a practical alternative to apply these sketches to query optimization.


Statistical Machine Learning for Astronomy -- A Textbook

arXiv.org Machine Learning

This textbook provides a systematic treatment of statistical machine learning for astronomical research through the lens of Bayesian inference, developing a unified framework that reveals connections between modern data analysis techniques and traditional statistical methods. We show how these techniques emerge from familiar statistical foundations. The consistently Bayesian perspective prioritizes uncertainty quantification and statistical rigor essential for scientific inference in astronomy. The textbook progresses from probability theory and Bayesian inference through supervised learning including linear regression with measurement uncertainties, logistic regression, and classification. Unsupervised learning topics cover Principal Component Analysis and clustering methods. We then introduce computational techniques through sampling and Markov Chain Monte Carlo, followed by Gaussian Processes as probabilistic nonparametric methods and neural networks within the broader statistical context. Our theory-focused pedagogical approach derives each method from first principles with complete mathematical development, emphasizing statistical insight and complementing with astronomical applications. We prioritize understanding why algorithms work, when they are appropriate, and how they connect to broader statistical principles. The treatment builds toward modern techniques including neural networks through a solid foundation in classical methods and their theoretical underpinnings. This foundation enables thoughtful application of these methods to astronomical research, ensuring proper consideration of assumptions, limitations, and uncertainty propagation essential for advancing astronomical knowledge in the era of large astronomical surveys.


Uncertainty-Aware Graph Neural Networks: A Multi-Hop Evidence Fusion Approach

arXiv.org Artificial Intelligence

Graph neural networks (GNNs) excel in graph representation learning by integrating graph structure and node features. Existing GNNs, unfortunately, fail to account for the uncertainty of class probabilities that vary with the depth of the model, leading to unreliable and risky predictions in real-world scenarios. To bridge the gap, in this paper, we propose a novel Evidence Fusing Graph Neural Network (EFGNN for short) to achieve trustworthy prediction, enhance node classification accuracy, and make explicit the risk of wrong predictions. In particular, we integrate the evidence theory with multi-hop propagation-based GNN architecture to quantify the prediction uncertainty of each node with the consideration of multiple receptive fields. Moreover, a parameter-free cumulative belief fusion (CBF) mechanism is developed to leverage the changes in prediction uncertainty and fuse the evidence to improve the trustworthiness of the final prediction. To effectively optimize the EFGNN model, we carefully design a joint learning objective composed of evidence cross-entropy, dissonance coefficient, and false confident penalty. The experimental results on various datasets and theoretical analyses demonstrate the effectiveness of the proposed model in terms of accuracy and trustworthiness, as well as its robustness to potential attacks. The source code of EFGNN is available at https://github.com/Shiy-Li/EFGNN.